My voyage of discovery to proteins in flatland ...and beyond

The 9th-10th type III fibronectin domain pair (9-10FNIII) has found widespread use as a biomimetic surface for cell adhesion. However, the effect of mutations to 9-10FNIII on its surface adsorption characteristics have not been investigated. Here we address this issue using total internal reflection fluorescence (TIRF) and circular dichroism spectroscopy, comparing two conformationally stable 9-10FNIII mutants against the wild type. Desorption of the 9-10FNIII mutants from the silica surface was minimal in comparison to desorption of 9-10FNIII. The extent and rate of protein desorption from silica was empirically matched by loss of secondary structure upon adsorption, with only the spectrum for 9-10FNIII showing extensive loss of the beta-sandwich fold. For the proteins adsorbed to hydrophobic surfaces, only the CD spectra for the 9-10FNIII mutant constrained via an interdomain disulphide bridge showed similarity with the corresponding solution structure. Since the binding of 9-10FNIII to integrin alpha5beta1 is highly dependent on the relative spatial arrangement of the two domains, we suggest that the observed differences in cell adhesion and spreading on wild type 9-10FNIII and mutants may in part be attributed to the extent of protein desorption and unfolding at the surface.     

Carborane as a tunable tag for Ru catalysts: generating an anion-appended recyclable and robust catalyst suitable for the noncovalent binding concept

Ruthenium carbene complexes 9 with a closo-1,2-C(2)B(10)H(11) tag and 10 with an ionic [nido-7,8-C(2)B(9)H(11)](-) tag were synthesized. Both 9 and 10 are highly reactive catalysts for olefin metathesis reactions. Importantly, 10 is a robust and recyclable anion-appended catalyst that was suitable for noncovalent binding with many cationic resins. At least ten recycles were achieved for RCM of the selected substrate using 10 as the catalyst in ionic liquids.     

Synthesis and characterization of near-infrared absorbing benzannulated aza-BODIPY dyes

A series of novel aza‐diisoindolmethine dyes 9 with six different aryl and heteroaryl groups at the indole moiety have been synthesized by the addition of aryl Grignard compounds to phthalodinitrile and subsequent reaction with formamide. A plausible reaction mechanism, through a Leuckart–Wallach‐type reduction has been confirmed by means of DFT calculations of the related transition and intermediate states. The corresponding boron difluoride complexes ( 10) of 9 were prepared in a subsequent reaction step and the spectroscopic and electrochemical properties of 9 and 10 have been investigated both experimentally and theoretically. The aza‐diisoindolmethines 9 exhibit an absorption maximum in the range from 615 to 720 nm, whereas the complexes 10 show a bathochromically shifted absorption maximum between 681 and 793 nm. Measurements of 9 and 10 by cyclic voltammetry display fully reversible redox waves for the reduction and oxidation with higher potentials for 10 . From the measured redox potentials, the HOMO and LUMO energy levels were calculated for 9 and 10 . The frontier orbital energies, the energies of the absorption bands, as well as the orbitals involved in the absorption process were calculated with DFT and compared to the measured results of 9 and 10 . The absorption maximum can be related to an intense HOMO–LUMO transition and the more‐pronounced stabilization of the LUMO upon complexation is the origin of the bathochromic shift of the absorption. Additionally, single‐crystal structures for two species, 10 d and 10 f , are reported.     

Natural product chemistry. Part 153 . Synthesis and possible anticancer activity of 8-nitronoracronycine

Since the strategy for the synthesis of 9-, 10- and 11-nitronoracronycine [3,4] could not be applied to the 8-nitronoracronycine 9 , we here report the preparation of the latter by a fusion of methyl 2-amino-6-nitrobenzoate 2 and phloroglucinol 3 . The fusion of 2 and 3 gave 1,3-dihydroxy-8-nitro-9(10H)-acridinone 6 . Subsequent methylation, demethylation and reaction with 2-chloro-2-methyl-3-butyne afforded the desired 8-nitronoracronycine 9 . Compound 9 , 1,3-dimethoxy-10-methyl-8-nitro-9(10H)-acridinone 7 and 1,3-dihydroxy-10-methyl-8-nitro-9(10H)-acridinone 8 were tested by the National Cancer Institute (NCI) for possible anticancer activity.     

Acid-catalysed rearrangements of steroid alkenes-III1. backbone rearrangement of de-a-steroid alkenes and preparation of an aromatic de-a-steroid.

Backbone rearrangement of 10a(methyl)-de-A-cholest-5-ene (3c), 6-ene (3d), 9-ene (3s) and 5(10)-ene (3b) affords products isomeric at C-20 and with the C-10 methyl group in the more stable equatorial position (6a. and 6b). 5-Methylene-10a(methyl)-de-A-cholestane (5) affords similar C-20 isomeric products with both the C-5 and C-10 methyls in the more stable equatorial positions (9a and 9b). The de-A-alkenes (3) provided a convenient starting point for preparation of de-A- cholesta-5,7,9-triene (7). Components (6a, 6b, 7, 9a and 9b) have been used to confirm the widespread occurrence of homologous series of de-A-steroids in marine shales with a mild thermal history.     

Synthesis and Antimicrobial Studies of Novel Imidazole Containing Bisazetidinones and Bisthiazolidinone Derivatives

A simple, practical, and efficient approach to new series of imidazole containing bisazetidinones ( 7a , 7b , 7c , 7d , 7e , 7f , 7g , 7h , 7i , 7j and 9a , 9b , 9c , 9d , 9e , 9f , 9g , 9h , 9i , 9j ) was prepared by Staudinger [2 + 2] cycloaddition reaction, and bisthiazolidinones ( 8a , 8b , 8c , 8d , 8e , 8f , 8g , 8h , 8i , 8j and 10a , 10b , 10c , 10d , 10e , 10f , 10g , 10h , 10i , 10j ) were obtained by cyclization of bisimines with thioglycolic acid. The bisimines ( 5a , 5b , 5c , 5d , 5e , 5f , 5g , 5h , 5i , 5j and 6a , 6b , 6c , 6d , 6e , 6f , 6g , 6h , 6i , 6j ) were synthesized by the condensation of 3‐(1‐(3‐aminobenzyl)‐4, 5‐dihydro‐1H‐imidazol‐2‐yl) aniline ( 3 , 4 ) with a series of different substituted aromatic aldehydes. All the newly synthesized target compounds were evaluated for their in vitro antimicrobial activity against two Gram‐positive bacteria and two Gram‐negative bacteria. Additionally, these synthesized compounds were tested for their antifungal activities. Few compounds showed very good antibacterial and antifungal activity.     

Natural product chemistry. Part 159. Two methods for the synthesis of 4-azaacronycine as a potential antitumor agent

Two different methods for the synthesis of 4-azaacronycine ( 10 ) have been described. One route with a fusion reaction between 1,3-dihydroxy-10-methyl-9(10H)-acridinone ( 1 ) and 2-amino-2-methyl-3-butyne in a glass ampoule and the other by a reaction of 3-amino-1-methoxy-10-methyl-9(10H)-acridinone ( 9 ) with 2-chloro-2-methyl-3-butyne.     

Green and Efficient Synthesis of 4‐Heteryl‐Quinolines and Their Antibacterial Evaluations

A green and efficient synthesis of 4‐heteryl‐quinolines ( 9a , 9b , 9c , 9d ), ( 10a , 10b , 10c , 10d ) and ( 11a , 11b , 11c , 11d ) has been described using PEG‐600 as a green solvent. Initially, 4‐chloro‐2‐methylquinolines ( 5a , 5b , 5c , 5d ) on reaction with aromatic heterocyclic thiols ( 6 ), ( 7 ), and ( 8 ) using PEG‐600 at 100°C for 30–40 min resulted in ( 9 ), ( 10 ), and ( 11 ) in good yields. Alternatively, ( 9 ), ( 10 ), and ( 11 ) could also be prepared in dimethylformamide using K2CO3 as base and tetrabutylammonium bromide as phase transfer catalyst at 100°C for 1–2 h. All the compounds were synthesized and characterized by IR, NMR, mass spectroscopy, and 13C NMR analysis. All synthesized compounds were screened for their antibacterial activity against clinical strains that include Gram‐positive (Bacillus subtilis MTCC 121, staphylococcus aureus MLS‐16 MTCC 2940, Micrococcus lutes MTCC 2470, and Staphylococcus aureus MTCC 96) and Gram‐negative bacteria (Candida albicans MTCC 3017, Klebsiella planticola MTCC 530, Escherichia coli MTCC 739, and Pseudomonas aeruginosa MTCC 2453). The results revealed that compounds ( 9a , 9d , 10a , 10c , 11b , and 11d ) exhibited significant antibacterial activity almost equal to the standard drug, that is, Ciprofloxacin.     

Determination of Arene Oxides by a Gas Chromatography-Mass Spectrometry System: Thermal Reactions of 9, 10-Epoxy-9, 10-Dihydrophenanthrene

Abstract

An analytical technique involving the use of a gas chromatograph coupled to a mass spectrometer-computer system, has been developed to detect arene oxides using 9, 10-epoxy-9, 10-dihydro-phenanthrene as a model substrate. The gas chromatograph was equipped with a hydrogen flame ionization detector and a high-resolution glass capillary column coated with SE-52 (methyl phenyl silicone). Two simultaneous thermal reactions (deoxygenation and rearrangement) of 9, 10-epoxy-9, 10-dihydrophenanthrene in the gas chromatograph were observed. The method developed was compared with a conventional method utilizing a packed glass column. Under the latter conditions neither thermal reactions nor 9, 10-epoxy-9, 10-dihydrophenanthrene were detected. The identification of the reactant and products was achieved by comparison of retention times and mass spectral fragmentation patterns obtained from authentic samples.     

10,10-二苄基-9(10H)蒽醇的酸催化选择性环化反应

蒽酮(1)与3,5-二甲氧基苯甲醛(2)在吡啶/哌啶中反应生成10-(3,5-二甲氧基苯甲亚基蒽酮(3); 3经Pd/C催化氢化生成10-(3,5-二甲氧基苄基蒽酮(4); 4与3-甲氧基苄基氯(5)进行相转移催化烷基化反应生成10-(3,5-二甲氧基苄基)-10-(3-甲氧基苄基)蒽酮(6); 6经NaBH₄还原生成10-(3,5-二甲氧基苄基)-10-(3-甲氧基苄基)-9(10H)-蒽醇(7); 7在酸催化下发生选择性1,7-脱水反应, 生成高三蝶烯(homotriptycene) (8). 其反应机理可能是7在酸存在下生成正碳离子中间体, 然后选择性地亲电进攻富电荷的3,5-二甲氧基苯基, 而不进攻3-甲氧基苯基.     

A continuous flow system design for simultaneous determination of heavy metals in river water samples

A new design of a continuous flow system applied to the simultaneous determination of the concentration of zinc(II), cadmium(II), lead(II), copper(II), nickel(II), cobalt(II) and chromium(VI) in river water is described. A flow cell made in the laboratory, which has been patented, based on a 'wall-jet' configuration with a three-electrode system is described. Optimum conditions for the determination of the metal ions are reported. The detection limits and relative standard deviation values were 4.01x10(-9) M and 0.078 for Zn(II), 1.76x10(-10) M and 0.056 for Cd(II), 4.69x10(-10) M and 0.134 for Pb(II), 2.29x10(-10) M and 0.138 for Cu(II), 1.61x10(-9) M and 0.093 for Ni(II), 1.91x10(-9) M and 0.113 for Co(II), and 1.35x10(-9) M and 0.081 for Cr(VI). The procedure was applied to a sample of water from the Arlanzón river and the results were compared with inductively coupled mass plasma spectrometry (ICP-MS) as reference method. The final aim of this work is to design a flow system, which can be automated.     

Melting,volatilisation and crystal lattice enthalpies of acridin-9(10H)-ones

The enthalpies and temperatures of melting and sublimation of acridin-9(10H)-one, 10-methylacridin-9(10H)-one, 2,10-dimethylacridin-9(10H)-one, 10-methyl-2-nitroacridin-9(10H)-one, 10-ethylacridin-9(10H)-one and 10-phenylacridin-9(10H)-one were measured by DSC. Enthalpies and temperatures of volatilisation were also obtained by fitting TG curves to the Clausius-Clapeyron relationship. Complementary investigations for anthracene showed the extent to which the thermodynamic characteristics thus obtained compare with those determined by means of other techniques. For compounds whose crystal structures are known, experimental enthalpies of sublimation correspond reasonably well to crystal lattice enthalpies predicted theoretically as the sum of electrostatic, dispersive and repulsive interactions. Analysis of crystal lattice enthalpy contributions indicates that dispersive interactions always predominate. Interactions are enhanced in acridin-9(10H)-one where intermolecular hydrogen bonds occur: this is reflected in the relatively high enthalpy of sublimation. This revised version was published online in July 2006 with corrections to the Cover Date.     

雨水和表面活性剂的淋溶对河道底泥中多氯联苯迁移的影响

利用雨水和表面活性剂(LAS、AE9和NPE10)淋溶多氯联苯(PCBs)污染的河道底泥柱,初步探讨了它们对表层底泥中PCBs洗脱量的影响,同时也研究了从表层洗脱出的PCBs随着淋洗液在下层底泥中的纵向迁移。淋洗液包括雨水和浓度均为1500mg.L-1的LAS、AE9、NPE10溶液以及浓度都是1500mg.L-1的AE9+NPE10和LAS+NPE10混和溶液。实验发现:雨水和同浓度的表面活性剂溶液对表层底泥中PCBs洗脱量大小依次为:雨水相似文献   

Reductive Activation of Arenes: XIII. Reaction with Butyl Bromide of Anionic Products Formed by Reduction of 9,10-Dicyanoanthracene with Potassium in Liquid Ammonia

Reduction of 9,10-dicyanoanthracene with one equivalent of metallic potassium in liquid ammonia at -33°C gives a product which almost does not react with butyl bromide. By contrast, the two-electron reduction product reacts with butyl bromide to form, depending on the reaction conditions and procedure for treatment of the reaction mixture, one of the three compounds: 10-butyl-9-cyanoanthracene, 10-butyl-10-cyano-9,10-dihydroanthracen-9-one, or 9,10-dibutyl-9,10-dicyano-9,10-dihydroanthracene. Relatively stable 10-butyl-9,10-dicyano-9,10-dihydro-9-anthryl anion was presumed to be a common precursor of these products.     

Determination of coenzyme Q10 in over-the-counter dietary supplements by high-performance liquid chromatography with coulometric detection

A rapid and sensitive method is described for the determination of coenzyme Q10 (Q10) in over-the-counter dietary supplements by automated high-performance liquid chromatography (HPLC) with coulometric detection. Sample solutions of powder-filled capsules, oil-based softgels, and tablets were prepared by serial dilution with 1-propanol. After dilution, a known volume of sample solution containing Q10 and the internal standard, coenzyme Q9 (Q9), was directly injected into the HPLC system. Most of electrochemically active compounds in the injection were oxidized at the precolumn conditioning cell and postcolumn guard cell. Q9 and Q10 were monitored at an analytical cell that contained 2 coulometric electrodes, where Q9 and Q10 were reduced to the corresponding ubiquinol-9 and -10 and then oxidized to produce currents. This method produced a linear detector response for peak height measurements over the concentration range of 0.05-8 microg/mL (r > 0.999). The lower limit of detection was 5 ng/mL (signal-to-noise ratio, > or =3). The mean recovery was 98.9 +/- 0.6%; coefficients of variation for intra- and interday precisions were 1.8-4.0%. The proposed method was successfully applied to the determination of Q10 in marketed products.     

Synthesis and Reactions of Some Heterocyclic Candidates Based on 2‐Amino‐4,5,6,7‐tetrahydrobenzo[b]thiophene Moiety as Anti‐Arrhythmic Agents

In continuation of our previous work, a series of novel thiophene derivatives 4 , 5 , 6 , 8 , 9 , 9a , 9b , 9c , 9d , 9e , 10 , 10a , 10b , 10c , 10d , 10e , 11 , 12 , 13 , 14 , 15 , 16 were synthesized by the reaction of ethyl 2‐amino‐4,5,6,7‐tetrahydrobenzo[b]thiophene‐3‐carboxylate ( 1 ) or 2‐amino‐4,5,6,7‐tetrahydrobenzo[b]thiophene‐3‐carbonitrile ( 2 ) with different organic reagents. Fusion of 1 with ethylcyanoacetate or maleic anhydride afforded the corresponding thienooxazinone derivative 4 and N‐thienylmalimide derivative 5 , respectively. Acylation of 1 with chloroacetylchloride afforded the amide 6 , which was cyclized with ammonium thiocyanate to give the corresponding N‐theinylthiazole derivative 8 . On the other hand, reaction of 1 with substituted aroylisothiocyanate derivatives gave the corresponding thiourea derivatives 9a , 9b , 9c , 9d , 9e , which were cyclized by the action of sodium ethoxide to afford the corresponding N‐substituted thiopyrimidine derivatives 10a , 10b , 10c , 10d , 10e . Condensation of 2 with acid anhydrides in refluxing acetic acid afforded the corresponding imide carbonitrile derivatives 11 , 12 , 13 . Similarly, condensation of 1 with the previous acid anhydride yielded the corresponding imide ethyl ester derivatives 14 , 15 , 16 , respectively. The structures of newly synthesized compounds were confirmed by IR, ¹H NMR, ¹³C NMR, MS spectral data, and elemental analysis. The detailed synthesis, spectroscopic data, LD₅₀, and pharmacological activities of the synthesized compounds are reported.     

Gas chromatographic method for analysis of conjugated linoleic acids isomers (c9t11, t10c12, and t9t11) in broth media as application in probiotic studies

A gas chromatography (GC) procedure is assayed for analysis of conjugated linoleic acid (CLA) isomers cis-9, trans-11-octadecadienoic (c9t11); trans-10, 12 cis-octadecadienoic (t10c12); and trans-9, trans-11-octadecadienoic (t9t11) in culture broth by GC using NaOH-BF3 in methanol for methylating and a long capillary (100 m) high-polarity column. Repeatability of the method is assessed; the coefficient of variation for CLA isomers ranges from 4.62 for c9t11 to 8.19 for t9t11. Recovery ranges between 88.01 and 89.76, with a mean value of 89.06 for all CLA isomers studied. This method may be considered advantageous for analysis of CLA isomers in probiotics cultures samples.     

含2-氯-5-吡啶甲基的双氰基取代乙烯酮缩胺类化合物的合成及生物活性

新烟碱类杀虫剂由于具有高效、低毒、无交互抗性和内吸性等特点,成为杀虫剂领域新的研究热点［１］．本文以Ｎｉｔｅｎｐｙｒａｍ为母体,首次合成了２－氰基－３－（２－氯－５－吡啶甲氨基）－３－甲硫基丙烯腈（９）,并以其为中间体合成了１９个双氰基取代的含２－氯...     

Free-radical destruction of beta-lactam antibiotics in aqueous solution

Many pharmaceutical compounds and metabolites are being found in surface and ground waters, indicating their ineffective removal by conventional wastewater treatment technologies. Advanced oxidation/reduction processes (AO/RPs), which utilize free-radical reactions to directly degrade chemical contaminants, are alternatives to traditional water treatment. This study reports the absolute rate constants for reaction of three beta-lactam antibiotics (penicillin G, penicillin V, amoxicillin) and a model compound (+)-6-aminopenicillanic acid with the two major AO/RP reactive species: hydroxyl radical ((*)OH) and hydrated electron (e(-)aq). The bimolecular reaction rate constants (M(-1) s(-1)) for penicillin G, penicillin V, amoxicillin, and (+)-6-aminopenicillanic acid for (*)OH were (7.97 +/- 0.11) x 10(9), (8.76 +/- 0.28) x 10(9), (6.94 +/- 0.44) x 10(9), and (2.40 +/- 0.05) x 10(9) and for e(-)aq were (3.92 +/- 0.10) x 10(9), (5.76 +/- 0.24) x 10(9), (3.47 +/- 0.07) x 10(9), and (3.35 +/- 0.06) x 10(9), respectively. To provide a better understanding of the decomposition of the intermediate radicals produced by hydroxyl radical reactions, transient absorption spectra were observed from 1 to 100 micros. In addition, preliminary degradation mechanisms and major products were elucidated using (137)Cs gamma irradiation and LC-MS. These data are required for both evaluating the potential use of AO/RPs for the destruction of these compounds and studies of their fate and transport in surface waters where radical chemistry may be important in assessing their lifetime.     

Synthesis,characterization, and biological activity of some aza‐uracil derivatives

Thiation of 1 by LR gave the corresponding 3,5‐dithioxo derivative 2 and the trimer 3 . Methylation of 1 afforded the S‐methyl derivative 4 . Compound 1 was fused with 6‐bromo‐2‐phenyl‐benzo[1,3‐d]oxazin‐4‐one ( 5 ) and gave 6 . Condensation of 1 with some acid derivatives 7a , 7b , 7c , 7d and/or 8a , 8b , 8c yielded thiadiazolo‐triazine derivatives 9a , 9b , 9c , 9d and 10a , 10b , 10c . Compounds 9a , 9c and 10c were hydrolyzed to furnish 11a , 11b , 11c Acetylation of 14 afforded mono‐ and diacetyl‐derivatives 15 and 16 . Benzoylation of 14 afforded mono‐ and dibezoyl‐derivatives 17 and 18 . 14 with some aromatic aldehydes yielded 9a , 9b , 9c . Reacting 14 with phenyl (iso‐ and/or isothio‐) cyanate gave the urea derivatives 20a , 20b . Thiation of 14 with P₄S₁₀ furnished 21 . The newly synthesized compounds were tested as antimicrobial agents. J. Heterocyclic Chem., (2011)