Conformations of trimethoxymethylsilane: matrix isolation infrared and ab initio studies

Conformations of trimethoxymethylsilane were studied using matrix isolation infrared spectroscopy and ab initio computations. Trimethoxymethylsilane was trapped in both argon and nitrogen matrixes using heated nozzle effusive sources and a supersonic jet source, in an effort to alter the conformational population in the matrix. Ab initio calculations were carried out at the HF and B3LYP level using 6-31++G basis set to support our experimental observations. The frequencies computed at the B3LYP level was found to fit well with our experimental data. A conformer with a C1(g(+/-)g(+/-)t) structure was predicted by our computations to be the ground state conformer.     

Conformations of dimethoxydimethylsilane: matrix isolation infrared and ab initio studies

Conformations of dimethoxydimethylsilane (DMDMS) were studied using matrix isolation infrared spectroscopy, by trapping the silane in argon and nitrogen matrixes. The matrix was deposited using both an effusive and a supersonic jet source. The effusive source was maintained at two different temperatures, viz. 298 and 433 K, during deposition to alter the conformational population of the silane. The experimental results were supported by computations performed at both the HF and B3LYP levels, using 6-31++G** basis set. Vibrational frequency calculations were carried out to assign the experimental features and also to ensure that the computed structures did indeed correspond to minima. A conformer with a G+/-G-/+ structure was found to be the ground state, while G+/-T and G+/-G+/- structures were the next higher energy conformers with energies of 1.32 and 1.48 kcal/mol, respectively. Natural bond orbital analysis was carried out at both HF/6-31++G** and B3LYP/6-31++G** level which indicated that the charge-transfer hyperconjugative interactions largely determine the conformational preferences in this molecule. This interaction appears to be smaller in DMDMS than in the corresponding carbon analogue, dimethoxypropane (DMP).     

Conformations of dimethoxymethane: matrix isolation infrared and ab initio studies

Conformations of dimethoxymethane (DMM) were studied using matrix isolation infrared spectroscopy. DMM was trapped in an argon matrix using an effusive source at 298, 388 and 430 K. Experiments were also done using a supersonic jet source to look for conformational cooling in the expansion process. As a result of these experiments, spectrally resolved infrared features of the ground and first higher energy conformer of DMM have been recorded, for the first time. The experimental studies were supported by ab initio computations performed at HF and B3LYP levels, using a 6-31++G** basis set. Computationally, four minima were identified corresponding to conformers with GG, TG, G+G- and TT structures. The computed frequencies at the B3LYP level were found to compare well with the experimental matrix isolation frequencies, leading to a definitive assignment of the infrared features of DMM, for the GG and TG conformers. At the B3LYP/6-31++G** level, the energy difference between the GG and TG conformers was computed to be 2.30 kcal mol(-1). The barrier for conformation interconversion, TG-->GG level was calculated to be 0.95 kcal mol(-1). This value is consistent with the experimental observation that the spectral features due to the TG conformer disappeared in the matrix on annealing.     

Matrix isolation infrared and ab initio study of the conformations of 2,2-dimethoxypropane

Conformations of 2,2-dimethoxypropane (DMP) were studied using matrix isolation infrared spectroscopy. An effusive source maintained at different temperatures (298, 388 and 430 K) was used to deposit DMP in a nitrogen matrix. As a result of these experiments, spectrally resolved infrared features of the ground and first higher energy conformer of DMP have been recorded, for the first time. The experimental studies were supported by ab initio computations performed at B3LYP/6-31++G** level. Computationally, four minima were identified corresponding to conformers with G+/-G-/+, TG+/-, G+/-G+/- and TT structures. The computed frequencies at the B3LYP level were found to compare well with the experimental matrix isolation frequencies, leading to a definitive assignment of the infrared features of DMP, for the G+/-G-/+ and TG+/- conformers. At the B3LYP/6-31++G** level, the energy difference between the G+/-G-/+ and TG+/- conformers was computed to be 3.25 kcal x mol(-1). The barrier for conformation interconversion, TG+/--->G+/-G-/+, was calculated to be 1.29 kcal x mol(-1). The magnitude of this barrier is consistent with the experimental observation that the spectral features due to the TG+/- decreased considerably in intensity when the matrix was annealed.     

Matrix and ab initio infrared spectra of germanium carbonyls

Germanium monocarbonyl has been prepared by high-temperature vaporization of Ge with excess carbon powder or CO co-condensation and trapped in various matrices at 12 K. Fourier transform infrared spectra, ab initio (MP2 and CISD) and density function (Becke3LYP) calculations suggested a linear species with the formula GeCO. A weak feature appearing only in annealed N₂ and CO matrices containing GeCO has tentatively been assigned to germanium dicarbonyl on grounds of isotopic substitution and theoretical calculations. SCF and CI methods predict a bent structure for this complex.     

Matrix isolation infrared and ab initio study of the hydrogen bonding between formic acid and water

The infrared spectra of the formic acid-water complexes isolated in argon matrices are reported. Both supersonic jet expansion and a conventional effusive source followed by trapping in solid argon at 10K are used to obtain the matrices. The experimental IR spectra are compared to the data obtained from high level ab initio (MP2) and DFT (B3LYP) calculations with 6-311++G(d,p) and aug-cc-pVTZ basis sets. The complex formation results in red shifts in the C=O and O-H stretching vibrations and a blue shift in the C-O stretching vibration of formic acid. The O-H stretching modes of water also exhibit pronounced red shifts. Both the MP2 and B3LYP calculations located three minima corresponding to cyclic HCOOH...H2O complexes with two hydrogen bond interactions. The binding energies are -10.3, -5.1, and -3.5 kcal mol(-1), respectively, for the three complexes at the MP2/ aug-cc-pVTZ level, corrected for the basis set superposition error (BSSE) using the Boys-Bernardi counterpoise scheme. Comparison of the calculated frequencies of the three complexes with the matrix IR spectrum reveals that the lowest energy complex is formed. In addition, a complex of formic acid with two water molecules is observed.     

Matrix isolation and ab initio studies of the H2S---CO complex

The structure, energetics, and vibrational properties of complexes formed between H₂S and CO have been investigated by matrix isolation FTIR spectroscopy and ab initio molecular orbital theory. Two stable computational minima were found representing nearly linear hydrogen bonds between the subunits. The H₂S---CO and H₂S---OC species were calculated to be bound by 5.22 and 1.54 kJ mol⁻¹, respectively. The computational results were reproduced by experimental assignments for the carbon attached complex. The stretching vibrations of the complex subunits were found to be similarly perturbed upon complexation both experimentally and computationally.     

Detailed ab initio studies of the conformers and conformational distributions of gaseous tryptophan

A systematic and extensive conformational search has been performed to characterize the gas-phase tryptophan structures. A total of 648 unique trial structures were generated by allowing for all combinations of internal single-bond rotamers and were optimized at the DFT/B3LYP/6-311G* level of theory. A total of 45 local minima conformers were found. Further optimization of the 45 conformers with B3LYP and MP2/6-311++G** did not produce meaningful structural change, and accurate geometries, dipole moments, rotational constants, harmonic frequencies, and relative energies were then determined. Combined with statistical mechanics principles, the conformational distributions of gas-phase tryptophan at different temperatures are shown. The results clearly support the conclusion drawn by Compagnon et al. that only one dominant isomer existed in the molecular beam at 85 K and add further evidence that the supersonic jet expansion or embedding helium droplets did not produce an equilibrium distribution.     

Systematic ab initio studies of the conformers and conformational distribution of gas-phase tyrosine

A full structural assignment of the conformers of gaseous tyrosine is presented. A total of 1296 unique trial structures were generated by allowing for all combinations of internal single-bond rotamers and optimized at the B3LYP6-311G* level of theory and then subjected to further optimization at the B3LYP6-311++G** level. A total of 76 conformers are found and their dipole moments, rotational constants, and harmonic frequencies are determined. Accurate relative energies are given at the MP26-311G(2df,p)B3LYP6-311++G** level of theory. Characteristic H-bonding types are classified and listed for all the conformers. The four most stable conformers display an intramolecular H bond, COOH...NH(2), and an additional H-bonding interaction between the amino group and pi electron of the aromatic ring. The results further confirm that the global minimum conformations of the aromatic amino acids have the same H-bonding type. Combined with statistical mechanics principles, conformational distributions at various temperatures are computed and the temperatures with which the theoretical results match that of experiments are indicated.     

Force fields of allylamine conformers as studied by an ab initio calculation and infrared spectroscopy

The quadratic force constants of the five possible conformers of allylamine were calculated by an ab initio MC method. The infrared spectra of this molecule in the gas phase were remeasured and analyzed on the basis of the calculated vibrational frequencies. A potential energy surface with respect to the skeletal torsions was also calculated. The relative abundances of the S⁺G⁺, ST, CT, CG, and S⁺G^? conformers, predicted to be 44:32:16:7:1 at room temperature, are consistent with the experimental data.     

Matrix isolation IR spectroscopic and ab initio studies of C(3)N(-) and related species

Coupled cluster calculations were carried out for C(3)N(-), CCNC(-), C(3)N, CCNC, C(3)N(+), and C(3)O. They support the experimental identification of the C(3)N(-) ion by means of matrix isolation infrared (IR) spectroscopy. The anion was generated in electric discharges through the cyanoacetylene isotopomers HC(3) (14)N, HC(3) (15)N, and (2)HC(3)N, trapped in cryogenic rare gas matrices (Ne, Ar, Kr), and detected via its two most intense IR absorption bands, assigned to the nu(1) and nu(2) stretching vibrations. C(3)N(-) appears to be quite a stable anion, with a vertical detachment energy predicted to be as high as 4.42 eV. A large equilibrium electric dipole moment of 3.10 D facilitates the investigation of C(3)N(-) by microwave spectroscopy and radio astronomy. Various structural parameters and spectroscopic properties have been calculated for all tetra-atomic species considered.     

Conformations of trimethyl phosphite: a matrix isolation infrared and ab initio study

The conformations of trimethyl phosphite (TMPhite) were studied using matrix isolation infrared spectroscopy. TMPhite was trapped in a nitrogen matrix using an effusive source maintained at two different temperatures (298 and 410 K) and a supersonic jet source. The experimental studies were supported by ab initio computations performed at the B3LYP/6-31++G** level. Computations identified four minima for TMPhite, corresponding to conformers with C(1)(TG(±)G(±)), C(s)(TG(+)G(-)), C(1)(G(±)TT), and C(3)(G(±)G(±)G(±)) structures, given in order of increasing energy. Computations of the transition state structures connecting the C(s)(TG(+)G(-)) and C(1)(G(±)TT) conformers to the global minimum C(1)(TG(±)G(±)) structure were also carried out. The barriers for the interconversion of C(s)(TG(+)G(-)) and C(1)(G(±)TT) to the ground state C(1)(TG(±)G(±)) conformer were 0.2 and 0.6 kcal/mol, respectively. Comparison of conformational preferences of TMPhite with the related carbon compound, trimethoxymethane, and the organic phosphate, trimethyl phosphate, was also made using natural bond orbital analysis.     

Matrix isolation and ab initio study of the HXeCCH...CO2 complex

The HXeCCH...CO2 complex is studied experimentally and computationally. The complex is prepared in a low-temperature xenon matrix using UV photolysis of propiolic acid (HCCCOOH) and thermal mobilization of H atoms at 45 K. Photolysis of propiolic acid leads to the HCCH...CO2 complex as one of the photolysis products. The HCCH...CO2 complex is further photolyzed to the HCC...CO2 complex. Thermal annealing leads to the formation of HXeCCH complexed with CO2. The H-Xe stretching absorption of the HXeCCH...CO2 complex is blueshifted (+31.9 and +5.8 cm(-1)) from the value of the HXeCCH monomer in a xenon matrix. In the calculations, three HXeCCH...CO2 structures were found (one parallel and two linear structures) corresponding to the true energy minima on the potential energy surface. For the H-Xe stretching mode, the calculations give blueshifted values of +19.2 or +19.5 cm(-1) depending on the computational level [MP2/6-311++G(2d,2p) and MP2/aug-cc-pVDZ] for the parallel structure and +19.4 or +27.9 cm(-1) for one linear structure. For the second linear structure, the H-Xe stretching frequency is redshifted by -8.6 or -9.4 cm(-1) at these levels of theory. Based on the calculations, the experimental band shifted by +5.8 cm(-1) (1492.2 cm(-1)) most likely corresponds to the HXeCCH...CO2 parallel structure. The band with larger blueshift of +31.9 cm(-1) (1518.3 cm(-1)) can be due to another matrix site of the same structure or to the blueshifting linear structure.     

Far infrared spectrum,conformational stability,barriers to internal rotation,vibrational assignment,and ab initio calculations of 2-chloro-3-fluoropropene

The far infrared spectrum (375 to 30 cm^–1) of gaseous 2-chloro-3-fluoropropene, CH₂=C(CH₂F)CI, has been recorded at a resolution of 0.10 cm^–1. The fundamental asymmetric torsional mode is observed at 117.5 cm^–1 with ten excited states falling to low frequency for thes-cis (fluorine atom eclipsing the double bond) conformer. For the higher energy gauche conformer, the asymmetric torsion is estimated to be at 94 cm^–1. From these data the asymmetric torsional potential function has been calculated. The potential function coefficients are calculated to be in cm^–1):V ₁=803±21,V ₂=–94±21,V ₃= 1025±10,V ₄=95±10, andV ₆=2±1, with an enthalpy difference between the more stables-cis and gauche conformera of 550±100 cm^–1 (1.57±0.29 kcal/mol). This function gives values of 1227±50cm^–1(3.51±0.14kcal/mol), 1266±200 cm^–1 (3.62±0.57 kcal/mol), and 665±100 cm^–1 (1.90±0.29 kcal/mol), for thes-cis to gauche, gauche to gauche, and gauche tos-cis barriers, respectively. From the relative intensities of the Raman lines of the gas at 652 cm^–1 (gauche) and 731 cm^–1 (s-cis) as a function temperature, the enthalpy difference is found to be 565±96 cm^–1 (1.62±0.27 kcal/mol). However, the more polar gauche conformer remains in the crystalline solid. The Raman spectrum of the gas has been recorded from 3500 to 70 cm^–1 and, utilizing these data and the previously reported infrared data, a complete vibrational analysis is proposed for both conformers. The conformational stability, barriers to internal rotation, fundamental vibrational frequencies, and structural parameters that have been determined experimentally are compared to those obtained from ab initio Hartree-Fock gradient calculations employing both the 3–21 G^* and 6–31G^* basis sets and to the corresponding quantities for some similar molecules.     

High-resolution infrared spectroscopy and ab initio studies of the cyclopropane-carbon dioxide interaction

A jet-cooled high-resolution infrared spectrum of the cyclopropane-carbon dioxide complex was detected for the first time, using a rapid scan infrared spectrometer with an astigmatic multipass sample cell. The spectrum was recorded in the vicinity of the CO2 asymmetric stretching band (nu3) and exhibits a b-dipole selection rule. Altogether, over 200 lines were observed, assigned, and fitted to Watson's S-reduction Hamiltonian. Rotational and quartic distortion constants were obtained. The band origin was located at 2347.6263(2) cm(-1), redshifted by 1.5230(2) cm(-1) from the corresponding frequency of the CO2 monomer. The experimentally determined structure shows that CO2 lies next to a C-C bond edge and is perpendicular to the C3 ring, indicating that the interaction is characterized by the bonding between the carbon atom of CO2 and the pseudo-pi system of cyclopropane. The intermolecular distance between the carbon atom of CO2 and the center of mass of cyclopropane was determined to be 3.667(2) A. Complete ab initio geometry optimizations and harmonic frequency calculations were carried out at the level of second-order Moller-Plesset perturbation theory with four different basis sets: cc-pVDZ, 6-311++G(d,p), aug-cc-pVDZ, and aug-cc-pVTZ. The lowest-energy structure identified with the three larger basis sets is in accord with the experimental finding. In addition, a transition state was identified and the tunneling barrier height was computed.     

Infrared matrix isolation and ab initio studies of 3(2H)-pyridazinone and photoproduced 3-hyroxypyridazine

The infrared spectra of 3(2H)-pyridazinone and its rare tautomeric form, 3-hydroxypyridazine, isolated in an argon matrix are reported and discussed. Only the first tautomer was observed after deposition of the matrix. The second form was photochemically produced after ultraviolet irradiation of the matrix (phototautomeric process). This form has never been observed experimentally before. Ab initio 3-21G normal coordinate calculations were carried out for these two forms and on that basis, an assignment of the experimental spectra of both compounds was performed.     

Infrared matrix isolation and ab initio quantum mechanical studies of purine and adenine

Results are presented from ab initio SCF (3-21G) calculations for the geometries of the N(9)H and N(7)H tautomers of purine and adenine and vibrational spectra (wavenumbers and intensities) of the N(9)H forms. All these results are compared with available geometries from crystallographic studies and with reported infrared spectra of the molecules isolated in inert gas low-temperature matrices. The N(9)⇌N(7)H tautomerism of the molecules in question is also briefly discussed.     

UV-laser photoisomerization of fumaryl chloride: the first identification of maleoyl chloride: matrix isolation infrared and ab initio studies

Fourier transform infrared spectra of fumaryl chloride 1 isolated in an argon matrix at 10 K have been analyzed. The comparison between the ab initio HF/6-31G calculated infrared spectra with the experimental ones reveals the existence of three planar conformers, the cis cis 1a, the cis trans 1b and the trans trans 1c. Laser UV irradiation of 1 at lambda = 340 nm yields maleoyl chloride 2 by a carbon carbon double bond photoisomerization process. The first identification of this compound was performed by comparison of the experimental infrared spectra with the calculated ones at the MP2/6-1G** level. AM1 semiempirical and ab initio calculations were used to calculate the structure and the relative stability of the three non planar maleoyl chloride conformers.     

Matrix isolation and ab initio study of the hydrogen-bonded H2O2-CO complex

The structure, energetics, and infrared spectrum of the H2O2-CO complex have been studied computationally with the use of ab initio calculations and experimentally by FTIR matrix isolation techniques. Computations predict two stable conformations for the H2O2-CO complex, both of which show almost linear hydrogen bonds between the subunits. The carbon-attached HOOH-CO complex is the lower-energy form, and it has an interaction energy of -9.0 kJmol(-1) at the CCSD(T)/6-311++G(3df,3pd)// MP2/6-311++G(3df,3pd) level. The higher-energy form, HOOH-OC, has an interaction energy of 4.7 kJmol(-1) at the same level of theory. Experimentally, only the lower-energy form, HOOH-CO, was observed in Ar, Kr, and Xe matrices, and the hydrogen bonding results in substantial perturbations of the observed vibrational modes of both complex subunits. UV photolysis of the complex species primarily produces a complex between water and carbon dioxide, but minor amounts of HCO and trans-HOCO were found as well.     

Conformations of dimethylhydrogen phosphonate (DMHP): a matrix isolation infrared and ab initio study

The infrared spectra of dimethylhydrogen phosphonate (DMHP) isolated in nitrogen, argon and krypton matrices using an effusive source at 298 and 373 K have been recorded. Experiments were also performed using a supersonic jet source to look for conformational cooling in the expansion process. As a result of these experiments, infrared spectral characteristics of the ground and higher energy conformers of the DMHP have been identified for the first time. The structures of DMHP were optimized at the hybrid B3LYP and Hartree fock (HF) levels of theory using the 6-31++G** basis sets. Computationally, four minima were obtained corresponding to DMHP conformers with G (+/-)G (-/+), G (-)G (-), TG (+) and TG (-) structures in the order of increasing energy. Frequency calculations were done to confirm that the structures were indeed minima on the potential energy surface (PES). The computed frequencies corroborated well with the experimental matrix isolation infrared frequencies leading to definite assignments of the infrared features of DMHP, for the G (+/-)G (-/+) and TG (+) conformers. At B3LYP/6-31++G** level, the energy difference between the G (+/-)G (-/+) and G (-)G (-) conformer was 1.53 kcal/mol, and that between G (+/-)G (-/+) and TG (+), G (+/-)G (-/+) and TG (-) were 1.65 and 1.95 kcal/mol. Transition-state calculations were also carried out at B3LYP/6-31++G** level connecting the G (+/-)G (-/+) to G (-)G (-), TG (+) and TG (-) conformers. Computations indicated that the conformer interconversion between G (-)G (-) --> G (+/-)G (-/+) is barrierless, whereas the barriers for TG (+) --> G (+/-)G (-/+) and TG (-) --> G (+/-)G (-/+) are 1.47 and 0.88 kcal/mol, respectively.