C-H⋯O, O-H⋯C, and C-H⋯C interactions in complexes of carbocations and carboanions

Molecular complexes formed by different forms of carbocations (carbenium ions) and carboanions with water, acetylene, and methane molecules have been calculated by the MP2/6-311++G(2df,2pd) method. In complexes with water where the carbon atom of the carbocation (carboanion) acts as the proton donor (acceptor), the energies of the C-H?O and O-H?C hydrogen bonds turn out to be approximately the same being 13–20 kcal/mol for carbocation (carboanion) species differing in the valence state of the carbon atom. Two types of C-H?C interactions have been revealed depending on the charge at the bridging hydrogen atom, which is determined by the hybridization of the donor carbon atom. The C-H?C interaction energy in molecular complexes with the positively charged hydrogen atom (carboanion complexes with acetylene) is an order of magnitude higher than in the complexes where the bridging hydrogen atom has an excess of electron density (carbocation complexes with methane). In all the complexes under consideration, the covalent C-H bond involved in interaction is elongated, and the negative charge is transferred from the acceptor to the donor.     

The synergistic cooperation of NH⋯O and CH⋯O hydrogen bonds in the structures of three new phosphoric triamides

The supramolecular assemblies of three new phosphoric triamides, {(C₆H₅CH₂)(CH₃)N}₂(4-CH₃-C₆H₄C(O)NH)P(O) (1), {(C₆H₁₁)(CH₃)N}₂(4-CH₃-C₆H₄C(O)NH)P(O) (2) and {(C₂H₅)₂N}₂(4-CH₃-C₆H₄C(O)NH)P(O) (3) were studied by single crystal X-ray diffraction as well as by Hirshfeld surface analysis. It was found that a synergistic cooperation of NH?O and CH?O hydrogen bonds occurs in all three structures, but forming unique supramolecular architectures individually. Along with the presence of centrosymmetric dimers in 1, 2 and 3, based on a classical NH?O hydrogen bond, the presence of weak CH?O interactions play an additional and vital role in crystal architecture and construction of the final assemblies, collectively identified as a centrosymmetric dimer (0D), a 1-D array and a 3-D network, respectively. These differences in superstructures are related to the effect of aromatic, bulk and flexible groups used in the molecules designed, with a similar C(O)NHP(O) backbone. The NH?O contacts in 1, 2 and 3 are of the “resonance-assisted hydrogen bond” types and also the anti-cooperativity effect can be considered in the multi-acceptor sites P═O in 1 and 2 and C═O in 3. All three compounds were further studied by 1D NMR experiments, 2D NMR techniques (HMQC and HMBC (H–C correlation)), high resolution ESI–MS, EI–MS spectrometry and IR spectroscopy methods.     

Theoretical study of H⋯P and X⋯P interactions of methylphosphines with HSX molecules

Ab initio calculations were used to analyze the interactions between thiohypohalous acids (HSX; X = F, Cl, Br, I) and methylphosphine derivatives (PH _n Me_3?n , n = 0–3) at the MP2/aug-cc-pVDZ level of theory. Interaction of HSX with PH _n Me_3?n leads to both hydrogen bond (HSX–PH _n Me_3?n –HB) as well as halogen bond (HSX–PH _n Me_3?n –XB) complexes. Stabilities of both HB and XB complexes increase with basicity of the phosphines. However, HB complexes of a phosphine molecule with different HSX have the same order of stabilities, but XB complexes of heavier thiohypohalous acids are more stable. Electron densities of complexes were characterized with the atoms in molecules methodology. The charge transfer within dimers was analyzed by means of natural bond orbitals.     

Features of strong O–H⋯O and N–H⋯O hydrogen bond manifestation in vibrational spectra

The work deals with the establishment of the dependence of the vibrational frequencies of strong O–H?O and N–H?O hydrogen bonds for the diagnosing the bonds themselves. To this end, the Raman spectra of a large number of different normal and deutero-substituted crystals characterized by the presence of strong O–H?O and N–H?O bonds are measured and the quantum chemical calculation is performed for one of these compounds. The dependence of the O–H stretching frequency on the O?O distance is constructed differing from that previously known for short O?O contacts. The mechanisms of significant broadening of the O–H vibration band in strong O–H?O hydrogen bonds are considered. Different dependences of the N–H vibrational frequencies in N–H?O bonds are reported and the causes of this diversity are discussed.     

Cooperative and substitution effects in enhancing strengths of halogen bonds in FCl⋯CNX complexes

In this paper, the cooperative effect of halogen bond with hydrogen bond has been used to make a halogen bond in FCl-CNH dimer vary from a chlorine-shared one to an ion-pair one. The halogen bond is strengthened in FCl-CNH-CNH trimer and its maximal interaction energy equals to -76 kJ∕mol when the number of CNH in FCl-CNH-(CNH)(n) polymer approaches infinity. Once the free H atom in FCl-CNH-CNH trimer is replaced with alkali metals, the halogen bond becomes strong enough to be an ion-pair one in FCl-CNH-CNLi and FCl-CNH-CNNa trimers. An introduction of a Lewis acid in FCl-CNH dimer has a more prominent effect on the type of halogen bond. A prominent cooperative effect is found for the halogen bond and hydrogen bond in the trimers. FH-FCl-CNH-CNH and FH-FCl-CNH-CNLi tetramers have also been studied and the interaction energy of halogen bonding in FH-FCl-CNH-CNLi tetramer is about 12 times as much as that in the FCl-CNH dimer. The atoms in molecules and natural bond orbital analyses have been carried out for these complexes to understand the nature of halogen bond and the origin of the cooperativity.     

Coupling of ν(NH⋯N) vibrations with the γ(NH⋯N) overtone in solid imidazole derivatives

The IR spectra of a number of imidazole derivatives were studied in the solid state at room and liquid nitrogen temperatures. The bands ascribed to stretching and out-of-plane deformation vibrations of NH groups involved in strong NH⋯N hydrogen bonds were analysed. The energy of this bond reflected in the position of the ν(NH⋯N) band changes over a broad range so that it was possible to investigate band shaping due to the overlap with the overtone band of the γ(NH⋯N) mode. The correlation between the γ(NH⋯N) and ν(NH⋯) frequencies shows that the γ(NH⋯N) value for strong NH⋯N bridges only slightly depends on ν(NH⋯N).     

Energies of OH⋯X− hydrogen bonds in the gas phase and proton affinities

The energies of hydrogen-bond formation (−ΔH⁰_HX) between hydroxy derivatives and halide ions in the gas phase obey the following relationship: −ΔH⁰_HX = 0 (ΔPA > 0)+32 e^{−0.0156&mid;ΔPA&mid;}, or −ΔH⁰_HX = −ΔPA (ΔPA < 0) + 32 e^{−0.0156∣ΔPA∣}, where ΔPA is the difference between the heterolytic dissociation energy of the -OH and HX bonds. This relation is discussed as a function of the different factors (electrostatic, repulsion, polarization and charge transfer) contributing to the protonation reaction or hydrogen-bond formation.     

Hydrocarbons as proton donors in C–H⋯N and C–H⋯S hydrogen bonds

C–H?N and C–H?S hydrogen bonds were analyzed in complexes where acetylene, ethylene, methane and their derivatives are proton donors while ammonia and hydrogen sulfide are proton acceptors. Ab initio calculations were performed to analyze those interactions; MP2 method was applied and the following basis sets were used: 6-311++G(d,p), aug-cc-pVDZ and aug-cc-pVTZ. The results showed that hydrogen bonds for complexes with ammonia are systematically stronger than such interactions in complexes with hydrogen sulfide. If the fluorine substituted hydrocarbons are considered then F-substituents enhance the strength of hydrogen bonding. For a few complexes, mainly those where carbon atom in proton donating C–H bond possesses sp³ hybridization, the blue-shifting hydrogen bonds were detected. Additionally, Quantum Theory of ‘Atoms in Molecules’ and Natural Bond Orbitals method were applied to analyze H-bond interactions.     

Influence of OH⋯N and NH⋯O inter- and intramolecular hydrogen bonds in the conformational equilibrium of some 1,3-disubstituted cyclohexanes through NMR spectroscopy and theoretical calculations

The analysis of concentration effects in the (1)H NMR data of cis-3-aminocyclohexanol (ACOL) showed that its diequatorial conformer changes from 60% at 0.01 mol L(-1) to 70% at 0.40 mol L(-1) in acetone-d(6). A similar increase was also observed for the diequatorial conformer of cis-3-N-methylaminocyclohexanol (MCOL), from 32% (CDCl(3) 0.01 mol L(-1)) to 55% (CDCl(3) 0.40 mol L(-1)). The increase in solvent basicity leads to a large stabilization effect for the diequatorial conformer of both compounds too. For ACOL, it changes from 47% (ΔG(eqeq-axax)=0.06 kcal mol(-1)) in CCl(4) to 93% (ΔG(eqeq-axax)=-1.53 kcal mol(-1)) in DMSO, while for MCOL it goes from 7% (ΔG(eqeq-axax)=1.54 kcal mol(-1)) in CCl(4) to 82% (ΔG(eqeq-axax)=-0.88 kcal mol(-1)) in pyridine-d(6). These results indicate that the intramolecular hydrogen bonds (IAHB) OH?N and NH?O stabilize the diaxial conformers of these compounds in a non-polar solvent. For cis-3-amino-1-methoxycyclohexane (ACNE) and cis-3-N-methylamino-1-methoxy-cyclohexane (MCNE) no changes were observed in equilibrium with the variation of solvent polarity. These results indicate for the first time that the IAHB NH?O is not strong enough to stabilize the diaxial conformer of these compounds and that the conformation equilibria of the cis isomers of compounds ACOL and MCOL are influenced only by the IAHB OH?N. Moreover, the presence of a secondary amino group (93% of diaxial conformer in CCl(4)) leads to an IAHB OH?N stronger than in primary and tertiary amino-derivatives (53 and 54% of diaxial conformer, respectively) for 1,3-disubstituted cyclohexanes. Values obtained from the theoretical data through the B3LYP functional are in agreement with the experimental results and indicate that the IAHB strength that influences the conformational equilibrium of these compounds is the IAHB OH?N. Thus, the IAHB NH?O do not stabilize the diaxial conformer of the cis isomer of compounds ACNE and MCNE showing that the diequatorial conformer will always be more stable than the diaxial conformer, independent of concentration or solvent.     

Study of correlation effects on stretching force constants of the H3N⋯LiF lithium-bonded and H3N⋯HF hydrogen-bonded complexes

All quadratic, cubic and quartic force constants associated with high and low vibrational modes of the H₃N⋯HF hydrogen-bonded and H₃N⋯LiF lithium-bonded complexes have been calculated employing the Møller—Plesset perturbation theory to the second order (MP2) with the 4-31G** basis set.     

Specific C-H⋯N intramolecular interactions in the vinyloxy- and vinylthiopyridine series

A weak hydrogen bond with the participation of the vinyl group -hydrogen atom arises in 2-vinyloxypyridine and 2-vinylthiopyridine, which primarily exist in the s-trans-conformation, according to the ¹H and ¹³C NMR data. This interaction does not take place in 2-vinyloxymethyl- and 2-vinyloxyethylpyridines, which primarily exist in the s-cis-conformation. The C-H...N intramolecular interaction also does not occur in o-vinyloxyaniline due to the specific features of the stereoelectronic state of the amino group nitrogen atom.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 8, pp. 1077–1081, August, 1991.     

Computational study of hydrogen-bonded complexes of HOCO with acids: HOCO⋯HCOOH, HOCO⋯H(2)SO(4), and HOCO⋯H(2)CO(3)

Quantum chemistry calculations at the density functional theory (DFT) (B3LYP), MP2, QCISD, QCISD(T), and CCSD(T) levels in conjunction with 6-311++G(2d,2p) and 6-311++G(2df,2p) basis sets have been performed to explore the binding energies of open-shell hydrogen bonded complexes formed between the HOCO radical (both cis-HOCO and trans-HOCO) and trans-HCOOH (formic acid), H(2)SO(4) (sulfuric acid), and cis-cis-H(2)CO(3) (carbonic acid). Calculations at the CCSD(T)∕6-311++G(2df,2p) level predict that these open-shell complexes have relatively large binding energies ranging between 9.4 to 13.5 kcal∕mol and that cis-HOCO (cH) binds more strongly compared to trans-HOCO in these complexes. The zero-point-energy-corrected binding strengths of the cH?Acid complexes are comparable to that of the formic acid homodimer complex (～13-14 kcal∕mol). Infrared fundamental frequencies and intensities of the complexes are computed within the harmonic approximation. Infrared spectroscopy is suggested as a potential useful tool for detection of these HOCO?Acid complexes in the laboratory as well as in various planetary atmospheres since complex formation is found to induce large frequency shifts and intensity enhancement of the H-bonded OH stretching fundamental relative to that of the corresponding parent monomers. Finally, the ability of an acid molecule such as formic acid to catalyze the inter-conversion between the cis- and trans-HOCO isomers in the gas phase is also discussed.     

Intramolecular CO ⋯ H interaction in Arene(tricarbonyl)-chromium complexes

Unlike benzene(tricarbonyl)chromium which displays two carbonyl stretching vibrations bands in the IR spectrum, analogous tricarbonylchromium complexes of the general formula (C₆H₅ZMe)Cr(CO)₃ [Z = O, CH(OH), N(Pr), CH=CH] are characterized by three carbonyl bands, one of which is displaced to the low-frequency region. The appearance of that band was rationalized in terms of intramolecular interaction between hydrogen atoms in the substituent on the benzene ring and carbonyl groups.     

Structural variability of Ag(I) metal–organic networks: C–H⋯π and metal⋯π interactions

The synthesis and X-ray structural characterization of two silver(I) coordination polymers, [Ag₂(bpp)₂(Phdac)]·5H₂O (1) and [Ag₂(bpp)(HSSal)] (2), are reported, where bpp = 4,4′-trimethylene dipyridine, H₂Phdac = 1,4-phenylenediacetic acid, and H₃SSal = 5-sulfosalicylic acid. X-ray crystallography reveals that the structures are stabilized through hydrogen bonding interactions. The C–H?π and metal?π interactions of aromatic molecules play a crucial role in building a layered framework. Intricate combinations of the weak non-covalent interactions have been analyzed to explore cooperativity and competitiveness in the solid-state structures.     

Nitroaniline Derivatives of 2-Oxo-1-naphthylideneamines—Molecular Self-Assembling <Emphasis Type="Italic">via</Emphasis> C—H⋯O Intermolecular Hydrogen Bonds and Stabilization of O—H⋯N and N—H⋯O Tautomers in Solution and Solid State

Three Schiff-bases of the Ar—CH—N—Ar type were synthesized from 2-hydroxy-1-naphthaldehyde and o- (1), m- (2), and p-nitroaniline (3) in order to investigate the shift of the keto-amine/enol-imine tautomeric equilibrium that arises by the introduction of the electron-withdrawal nitro group. The compounds have been investigated experimentally, in the solid state and in the solution, by IR, NMR, UV spectroscopy, and X-ray single crystal analysis, and theoretically by using density functional theory (DFT). The tautomeric equilibrium is strongly shifted towards the keto-amine form despite of the nitro group position at N-phenyl ring in the solid state of molecular structures of 1, 2, and 3 (especially indicated by C—O and C—N bond distances). The keto-amine tautomeric form of the compounds is characterized by a strong, resonance assisted hydrogen bond (RAHB) of the N—H O type (the N O distances are 2.530(8), 2.554(2) and 2.555(5) Å in 1, 2, and 3, respectively). The molecules are assembled in the crystalline state into a 3D HB network (1), centrosymmetrical dimers (2) or infinite chains (3) by the C—H O intermolecular hydrogen bonds. In contrast, UV/VIS spectra of the chloroform solution of the title compounds reveal predominance of the enol-imine form. The molecular geometries and relative stabilities of the compounds determined by using DFT find good agreement with the experimental data.     

Ultraviolet photoelectron spectroscopy of the hydrogen bonded heterodimer H2S⋯HCl

The HeI photoelectron spectrum of the hydrogen bonded hetero-dimer H₂S⋯HCl shows two vertical ionization energies at 10.91 and 12.16 eV. Ab initio MO calculations reveal that these features are due to the sulphur and chlorine lone pair ionizations respectively. Results show that while the ground ionic state is repulsive the first excited ionic state is strongly bound. The photoelectron spectrum of the diethyl sulphide⋯HCl complex is similar to that of H₂S⋯HCl     

Physical nature of silane⋯carbene dimers revealed by state-of-the-art ab initio calculations

Using the SAPT2 + 3(CCD)δMP2 method in complete basis set (CBS) limit, it is shown that the interactions in the recently studied silane⋯carbene dimers are mainly dispersive in nature. Consequently, slow convergence of dispersion energy also forces slow convergence of the interaction energy. Therefore, obtaining very accurate values requires extrapolation of the correlation part to the CBS limit. The most accurate values obtained at the CCSD(T)/CBS level of theory show that the studied silane⋯carbene dimers are rather weakly bound, with interaction energies ranging from about −1.9 to −1.3 kcal/mol. Comparing to CCSD(T)/CBS, it will be shown that SCS-MP2 and MP2C methods clearly underestimate and methods based on SAPT2+ and having some third-order corrections, as well as the MP2 method, overestimate values of interaction energies. Popular SAPT(DFT) method performs better than SCS-MP2 and MP2C; nevertheless, underestimation is still considerable. The underestimation is slightly quenched if third-order dispersion energy and its exchange counterpart is added to the SAPT(DFT). The closest value of CCSD(T)/CBS has been given by the SAPT2 + (3)(CCD)δMP2 method in quadruple-ζ basis set. © 2019 Wiley Periodicals, Inc.     

Quantification of (−)-Epicatechin and Procyanidin B2 in Chocolates

JPC – Journal of Planar Chromatography – Modern TLC - Validation of a method for the quantification of (−)-epicatechin and procyanidin B2 in chocolates is reported. After a simple...     

Calculations for the vibration frequencies of the OH⋯O bond in KH2PO4 by a semiempirical method

The frequencies of the stretching vibration and the bending vibration of the OH⋯O bond in potassium dihydrogen phosphate have been calculated by means of two semiempirical formulae with three parameters. The calculated results can give satisfactory explanation for the experimental spectra of the potassium dihydrogen phosphate crystal. The parameters used in the calculations may be related to the chemical bonding and the charge distribution about the two oxygen atoms of the OH⋯O bond system.