Preparation and Reactions of Pyridinium Ylids via Decarboxylation of Pyridinium Betaines

Ylids are charged organic compounds with characters differ from regular organic compounds1. Nitrogen ylids, due to their instabilities, are not studied as vastly as phosphorus or sulfur ylids2. Nitrogen ylids are generally obtained by removing proton of the quaternary nitrogen salts with base3,4. In this work, we tried to study the generation of pyridinium ylids 4 via decarboxylation process in neutral condition and study the related reactions with electrophiles. The precursor of pyridiniu…     

An MP2 study on pre-reactive complexes (CH_2)_2O … XY (X,Y = H,F,Cl,Br,I)

The structures, energies, atomic chaiges and IR spectra of complexes (CH2)2O…XY (X, Y = H, F, Cl, Br, and I) have been examined by means of ab initio molecular orbital theory at the second-order level of Moller-Plesset perturbation correction. It is found that the hydrogen bond O…H-X is non-linear. The attraction between X and the H atoms in oxirane ring causes O…H-X bond bending. The hydrogen bond slighdy weakens the bond strength of C-O, and leads the bending and stretching mode of IR to shift to the red. The calculation results show that there is no evidence of a significant extent of proton transfer to give (CH2)2OH …X- in the isolated complexes.     

3-单酰胺喹唑啉酮衍生物的表征及密度泛函理论研究

Several 3-aminoquinazolin-4-(3H)-one derivatives were synthesized and characterized.Using proton nuclear magnetic resonance (NMR) spectra,we have investigated the barriers to rotation around the N ― N bond as a function of temperature.Changes in the NMR spectra at high temperatures are explained in terms of hindered rotations of the N ― N bond.Free energies of activation for the rate determining stereochemical process were calculated to be as high as 67-75 kJ · mol-1.Ground state molecular geometries and vibrational frequencies were calculated using the HF/6-31G and B3LYP/6-31G level of theories.The optimized bond lengths and bond angles are in good agreement with experimental values at both theoretical levels.     

Stable Structure and Characteristic Spectroscopy of （CH3COCH3）n （n = 1-7） Clusters

The stable acetone molecule clusters have been studied by using Becke＇s threeparameter （B3LYP） density functional theory （DFT） with standard 6-31G（d） basis set. The calculated results show that the optimal structures of acetone clusters are cyclic and the cycles become larger and larger with the increase of cluster size. The strongest vibration peaks for neutral clusters are C=O stretching vibration. The C=O stretching peaks of cyclic acetone clusters split into double ones when n≥3, the frequencies are red-shifted and corresponding intensifies increase with the increase of cluster Size.     

Parity Alternation of Silicon-doped Ternary Cationic Clusters HC_nSi_2~+(n=1～9)

Systematic study on the electronic/geometrical structures and the parity alternation effect of silicon-doped ternary cationic clusters HCnSi2＋（n = 1 ~9） have been carried out at the coupled cluster level. The ground-state （G-S） isomers of the clusters have been defined. The C, chains of the G-S isomers display polyacetylene-like structures. The even-n cations are more stable than the odd-n ones. Such a trend of even/odd alternation has been elaborated based on concepts of the bond character, atomic charge, incremental binding energy, ionization potential, proton affinity and fragmentation energies of the systems. The findings accord with the relative intensities of HC,,Si2＋ species recorded in the related mass spectrometric experiments.     

Synthesis and cationic selectivity studies of novel calix[4]arene derivatives containing heteroatom at the lower rim

A series of calixarene derivatives 2―5 containing heteroatom at the lower rim have been synthesized. 1H NMR studies and crystallographic structures demonstrated that the calix[4]arene derivatives adopted cone conformations. Their cationic binding abilities and selectivities towards heavy and tran- sition metal ions have been evaluated by solvent extraction of aqueous metal picrates. The obtained results indicated that the introduction of nitrogen, sulfur, and/or phosphor atoms to the calix[4]arene framework could effectively enhance their binding ability and selectivity for heavy and transition metal ions, such as Pb2 or Ag .     

DFT Studies on the Stoichiometric Thorium Oxide Clusters(ThO_2)_n(n = 1～5): Electronic and Structural Properties

Density functional theory(DFT) calculations are performed to investigate the electronic and structural properties of the stoichiometric thorium oxide clusters(ThO_2)_n-/0(n = 1～5). Generalized Koopmans' theorem is applied to predict the vertical detachment energies(VDEs)which are used to simulate the anionic photoelectron spectra(PES). Molecular orbital analyses are performed as well to analyze the chemical bonding in these thorium oxide clusters. The results show that the ground states of(ThO_2)_n-/0(n = 1～5) clusters prefer the low-spin structures. With increasing of the cluster size(n), the structure parameters of(ThO_2)_n-/0(n = 1～5) gradually evolve toward bulk thorium oxide species. It shows that both the coordination number and the average bond length increase gradually in(ThO_2)_n-/0(n = 1～5) to approach that of ThO2 bulk. What's more, the vibration frequencies of Th=O double bonds are found to be decreasing along with the increased cluster size.     

Density Functional Theory Study of HCN Adsorption on Small Gold Clusters

A theoretical study was carried out on the adsorption of hydrocyanic acid on small Aun （n ≤ 7） clusters using density functional methods. For HCN adsorption on gold clusters, no dependence was found with respect to the even-odd alternation in relation to the number of gold atoms in the cluster. The HCN molecule is adsorbed at simple adsorption sites （1-fold coordination）, perpendicular to the adsorption site. The largest adsorption energy is only about 74.61 kJ·mol^-1, which indicates that the HCN molecule does not decompose and the C-N bond retains triple bond, and that the C-H and C-N stretching frequencies are only weakly perturbed. The adsorbed C-N and C-H stretching frequencies are blue- and red-shifted compared with the values of free HCN, respectively.     

Design and Synthesis of p/m-[p-（un）Substituted Phenylsulfonamido]phenyl β-Diketo Acids and Quinoxalone Derivatives

Diketo acid derivatives are potent and selective HIV-1 integrase inhibitors. To investigate the detailed synthesis of those derivatives, a series of p/m-[p-（un）substituted phenylsulfonamido]phenyl β-diketo acid derivatives have been designed and synthesized. The quinoxalone derivatives as the potential bioisosteres of the biologically labile β-diketoacid pharmacophores have also been synthesized from reactions of the corresponding diketo acids with o-phenylenediamine. The structures of all diketo acid （ester） and quinoxalone derivatives were confirmed by 1^H NMR, 13^C NMR, IR, HRMS and/or MS （ESI）. X-ray crystallographic analysis of 11b demonstrates a similar arrangement of the side chain of quinoxalone derivatives with the parent diketoacids due to the intramolecular hydrogen bond （O…H-N） and the sp^2 hybridization configuration of the two nitrogen atoms of the quinoxalone ring.     

吡咯和呋喃气相质子化过程的密度泛函理论研究

Density functional theory and ab initio calculations have been used to determine structures and stabilities of the protonated aromatics species AH^＋ and AH2^2＋ （A=pyrrole, furan）. Possible mechanisms and relative energetics for protonation of pyrrole and furan by H3O^＋ and AH^＋ in the gas phase have been explored. Calculations show that the Cα-protonated species was the most stable structure for AH^＋, and the protonated AH^＋ might accommodate the second proton to yield AH2^2＋ if the free proton was available. The gas-phase H3O^＋ could protonate pyrrole and furan with significant exothermiCity and almost without barrier. The proton transfer from AH4^＋ to pyrrole and furan has a barrier ranging from 33.5 to 39.3 kJ/mol in the gas phase.     

Thermal benzene activation by 3d transition metal (Sc-Cu) oxide cations

Considering the importance and complexity of benzene oxidation on mineral oxide aerosol surfaces in the atmosphere,gas-phase 3 d-transition metal oxide cations were used as models of active sites on mineral oxide aerosols to mimic the corresponding reactions.The various cations have been prepared by laser ablation and reacted with benzene in a linear ion trap reactor.Of the 103 systematically investigated cations,39 clusters can oxidize benzene at room temperature.In addition to the adsorption channel,other five types of reaction channels were observed,including dehydrogenation of C6H6,charge exchange,hydrogen atom transfer,oxygen atom transfer,and the formation of C6H5O^+radical,among which the first two pathways are prevale nt and the formation of C6H6O^+cations has not been reported in literature.The insight into the benzene oxidation reactions derived from the gas-phase model systems is helpful to build a detailed picture of oxidative mechanisms of C6H6 and its derivatives over corresponding mineral oxide aerosols.     

N-phosphoryl amino acid models for P–N bonds in prebiotic chemical evolution

Post-translational modification of proteins by N-phosphorylation of the basic amino acid residues plays important roles in biological processes. The high-energy P–N bond might have contributed to the evolution of prebiotic chemistry. N-phosphoryl amino acids(PAAs) can serve as interesting small molecular models for the study of P–N bonds in prebiotic chemical evolution. PAAs are capable of simultaneously producing several important biomolecules such as polypeptides and oligonucleotides under mild reaction conditions. In this review, we describe the chemistry of PAAs, discusse their likely prebiotic origins and their reactivity and how they relate to biological P–N bond species. We also depict a possible prebiotic scenario mediated by PAAs in which PAAs may have acted as one of the essential forces driving prebiotic biomolecules to the first protocell.     

Theoretical prediction on vibrational spectra of [Ar…Ar-H]~+

As a special substance between isolated molecules and condensed phase, clusters have drawn more and more attention by theoreticians and experimentalists. The protonated rare gas cluster is one kind of simplest clusters, which can be looked on as the simplest solution composed of the simplest solute, proton, and the simplest solvent, rare gas. The study on such a system can help us to know more about the complex condensed matter. However, the information for the molecular properties of protonat…     

Structural,Electronic and Magnetic Properties of Co_nO(n = 2～10) Clusters: A Density Functional Study

The structural, electronic, and magnetic properties of Co_nO(n = 2～10) clusters have been systematically investigated within the framework of the generalized gradient approximation density functional theory. The results indicate that the O atom occupies the surface-capped position on Co_nO(n = 2～10) clusters. The stabilities of the host clusters are improved by adding one O atom. Maximum peaks of the second-order difference energy of the ground-state Co_nO clusters are found at n = 3, 6 and 8, indicating higher stability than their neighboring clusters. Compared with corresponding pure Con clusters, the O-doped cobalt clusters have larger gaps between the HOMO and LUMO energy levels, indicating their higher chemical stabilities. In addition, the doping of O atom exhibits different influence on the magnetism of the clusters. This is also further investigated by the local magnetic moment, deformation charge density and partial local density of states analysis.     

pH-Responsive Reversible DNA Self-assembly Mediated by Zwitterion

pH-Responsive DNA assembles have drawn growing attentions owing to their great potential in diverse areas.However,pH-responsive motifs are limited to specific DNA sequences and annealing is usually needed for DNA assemblies;therefore,sequence-independent pH-responsive DNA assembly at room temperature is highly desired as a more general way.Here,we propose a reversible pH-responsive DNA assembly strategy at room-temperature using zwitterion,glycine betaine(GB),as charge-regulation molecules.The reversible assembly and disassembly of DNA nanostructures could be achieved by alternatively regulating the acidic and basic environments in the presence of GB,respectively.In an acidic environment,carboxylate group in GB was protonated and GB was positively charged,which facilitated to shield the inherent electrostatic repulsion of DNA strands.Molecular simulation showed that the newly formed carboxyl group in protonated GB could form hydrogen bonds with bases in DNA to promote the assembly of DNA strands.In a basic solution,carboxylate group in GB was deprotonated and GB was neutral,thus inducing the dissociation of DNA assembly.     

Isomers and [2,3]-Sila-wittig Rearrangement of [（Allyloxy）silyl]lithium Silylenoid in the Gas Phase and THF Solvent

Theoretical calculations of the [2,3]-sila-wittig rearrangement of isomers of [（allyloxy）silyl]lithium （C3H5O）HzSiLi have been performed in the gas phase and THF solvent using the G3MP2B3 method. Seven isomers of silylenoid （C3H5O）H2SiLi, 1-7, are found. The [2,3]-silawittig rearrangement paths are followed using two isomers, 2 and 4, to yield the transition states as well as the products. In the transition state, the silicon center functions as a nucleophile and the aUyl as an electrophile. The interaction between the silicon and allylic sites leads to the formation of SiC（3） bond and the break of O-C（1） bond. Finally, the （allylsilyl）oxylithium （C3H5）H2SiOLi is obtained. The rearrangement paths are confirmed by the intrinsic reaction coordinate （IRC） calculations. The rearrangement mechanisms of reactions of 2 and 4 are similar, and the latter reaction is more favored in the gas phase and THF solvent. Also, the solvent effects are analyzed in this work.     

Theoretical Studies on the Dihydrogen Bonding Between Shortchain Hydrocarbon and Magnesium Hydride

The C--H…H dihydrogen-bonded complexes of methane, ethylene, acetylene, and their derivatives with magnesium hydride were systematically investigated at MP2/aug-cc-PVTZ level. The results confirm that the strength of dihydrogen bonding increases in the following order of proton donors： C（sp3）-H〈C（sp2）-H〈C（sp）-H and chlorine substituents enhance the C-H…H interaction. In the majority of the complexes with a cyclic structure, the Mg-H proton-accepting bond is more sensitive to the surroundings than C-H proton-donating bond. The nature of the electrostatic interaction in these C-H…H dihydrogen bonds was also unveiled by means of the atoms in mo- lecules（AIM） analysis. The natural bond orbital（NBO） analysis suggests that the charge transfer in the cyclic com- plexes is characteristic of dual-channel. The direction of the net charge transfer in the cyclic complexes is contrary to that previously found in dihydrogen bonded systems.     

Oxidation Effects on the Electronic Properties of Hydrogenated Silicon Clusters

The geometric and electronic properties of some hydrogenated silicon clusters in the presence of oxygen on the surface have been investigated.The density functional theory with generalized gradient approximation functional was applied in our calculations.By calculating the total energy,the double bond Si=O is shown to be more stable than the bridge bond Si-O-Si for large size oxidized clusters.The results of Mulliken population analysis indicate that a so-called passivation effect is enhanced by oxidization effects.From the energy band structures and density of states,we find that some localized states are induced by the p-orbital of O atom mainly and reduce the energy gaps substantially.     

Organophosphonotungstic HPA of Keggin Type with Sulfo,Taurine and Glycine Substituted Ethylphosphonic Acids as the Coordinate Center

Recent years, heteropoly acids (HPA)and their derivatives have received current attention due to their potential applications in analytical chemistry, catalysis, material sciences and medicine1-2. Usually, the core or coordinate center for most of the heteropoly compounds (HPC) are inorganic acids such as H3PO4, H3SiO3 etc. Although HPC with organophosphonic acids as coordinate center have been confirmed about 15 years ago, in which the molar ratio x: m for most of the heteropoly anion…