Chemisorption and hydrogen spillover on framework ruthenium catalysts

Conclusions Thermal-desorption and isotope methods were used to investigate the state of hydrogen found on the surface of ruthenium framework catalysts. The possibility of the migration of chemisorbed hydrogen from the ruthenium was demonstrated.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 8, pp. 1712–1715, August, 1988.     

Gas-phase hydrogen/deuterium exchange of adenine nucleotides

Gas-phase hydrogen/deuterium exchange reactions of (de)protonated (sodiated) adenosine-5'-mono-, di- and triphosphate ions with CD(3)OD, CD(3)CO(2)D and ND(3) were achieved using a combination of electrospray ionization and Fourier transform ion cyclotron resonance mass spectrometry. The reaction kinetics are dependent on factors such as the charge state, the phosphate chain length, the properties of the exchange reactants and the sodium content. The results indicate that the overall H/D exchange may involve specific sites even if endowed with high energetic barriers. The enhanced reactivity exhibited by adenosine polyphosphate ions compared with adenosine-5'-monophosphate suggests a critical role of the polyphosphate chain in rendering conformationally accessible remote H-donor sites. Low-energy collision-induced dissociation of (sodiated) adenine nucleotides anions supports the aptitude of the (poly)phosphate chain in probing distant sites via the intermediacy of a cyclic structure.     

Study of exchange of hydrogen for deuterium and tritium in α-aminoalkylphosphonous acids

The kinetics of isotope exchange of hydrogen for deuterium in -aminoalkylphosphonous acids as a function of the pH were investigated by PMR spectroscopy. Tritiumlabeled -aminoalkylphosphonous acids were obtained as a result of direct hydrogen- tritium exchange between T₂O and hydrophosphoryl compounds.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 9, pp. 1966–1969, September, 1990.     

Rearrangements and hydrogen—deuterium exchange in ferrocenylcarbenium ions

The rearrangement of the t-butyl group in t-butylferrocenyl carbenium ions (VI) and the hydrogen—deuterium exchange in the methyl group of methylferrocenyl carbenium ions (XVI) has been studied. The reaction rates depend on the size of the substituents at the carbenium ion center, an increase in the size of the substituents causing an increase in the rate. This effect is attributed, on the basis of the Gleiter and Cais models of ferrocenyl substituted carbenium ions, to increased steric hindrance between the substituents and the unsubstituted cyclopentadienyl ring.     

Homogeneous isotope exchange reaction between hydrogen and deuterium

The isotope exchange reaction between hydrogen and deuterium was studied in incident and reflected shock waves over the temperature range 1200–1800 K by vacuum ultraviolet absorption spectroscopy. The observed exchange reaction ensued after long induction periods at rates that proved to account for the amounts of exchange previously seen in single-pulse shock-tube and reflected-wave mass-spectrometric investigations. From the absence of detectable reaction during the induction period, lower bounds of 70 and 45 kcal were placed on the barriers to molecular exchange in four- and six-center transition structures, respectively.     

Hydrogen spillover on cerium-based catalysts

Data on hydrogen spillover (HS) in catalytic processes are systematized. Different opinions on the mechanism and participation of HS in various reactions are presented. Hydrogen spillover on CeO₂-based systems and physicochemical methods of investigation of the phenomenon are considered. Tentative mechanisms of HS are described and the role of HS in catalytic hydrogenation reactions is studied.

     

Isolation of isomers based on hydrogen/deuterium exchange in the gas phase

A method to isolate isomers in a Fourier transform ion cyclotron resonance mass spectrometer on the basis of their different hydrogen/deuterium exchange rates has been developed and applied to the protonated serine octamer cluster. Isolation allows interrogation of each isomer by infrared multi-photon dissociation to determine any differences in the building blocks that form these clusters. The experimental results strongly support previous assignments of an all-zwitterion structure to the slower-exchanging isomer and an all-neutral structure to its faster- exchanging counterpart.     

Study of solid-state catalytic isotope exchange of hydrogen inl-hydroxyproline under the action of spillover tritium

Reaction of high-temperature solid-state catalytic isotope exchange (HSCIE) of hydrogen in L-hydroxyproline was studied byab initio quantum-chemical calculations. A one-center synchronous mechanism of isotope exchange between the amino acid and the H₃O⁺ model acidic center was considered. The structures of transition states of the reaction and the activation energies were determined. Relative reactivity of the C−H bonds in the hydroxyproline molecule under conditions of HSCIE was studied. The results obtained are in agreement with experimental data on the stereoselectivity and regioselectivity of the HSCIE reaction,viz., the lower the calculated activation energy of isotope exchange, the larger the portion of hydrogen substituted by tritium in a given position of the amino acid molecule. The enhancement of the reactivity under conditions of solid-state isotope exchange can be associated with additional interaction between the exchanging H atoms and the electron-donor O and N atoms of the amino acid molecule in transition state. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1056–1060, June, 1999.     

Gas phase hydrogen/deuterium exchange reactions of fluorophenyl anions

Hydrogen/deuterium (H/D) exchange reactions of fluorophenyl and difluorophenyl anions (C₆H₄F^?, o-C₆H₃F ₂ ^? , m-C₆H₃F ₂ ^? , p-C₆H₃F ₂ ^? ) have been studied using the flowing afterglow-selected ion flow tube technique. The C₆H₄F^? anion exchanges all hydrogens for deuterium upon reaction with D₂O. The difluorophenyl anions o-, m-, and p-C₆H₃F ₂ ^? exchange three, two, and one hydrogen, respectively, with D₂O, whereas they undergo one, two, and three H/D exchanges, respectively, with CH₃OD. The structures of the anions and the isotope exchange dynamics within the intermediate ion-dipole complexes are discussed using ab initio molecular orbital calculations. Calculated values for the proton affinities of the most stable anions are 385.2, 378.0, 371.9, and 378.2 kcal/mol for C₆H₄F^?, o-C₆H₃F ₂ ^? , m-C₆H₃F ₂ ^? , and p-C₆H₃F ₂ ^? , respectively, in excellent agreement (within 2 kcal/mol) with the previous experimental values for the acidities of the corresponding fluorobenzenes. The H/D exchange results are explained by the energy differences of the intermediate DO^? and CH₃O^? species within the ion-dipole complexes; CH₃O^? is mobile within the “hot” intermediate complex, whereas DO^? is nearly “frozen” within the complex and cannot migrate across the barriers caused by the fluorine atoms or by the π electrons.     

Use of on-line hydrogen/deuterium exchange to facilitate metabolite identification

Biotransformation studies performed on an investigational compound (I, represented by R1-CH(NH(2))-CO-N(R2)-CH(2)-S-R3) led to the identification of five metabolites (M1-M5). Based on LC/MS (liquid chromatography/mass spectrometry) analysis which included the use of H(2)O and D(2)O in the mobile phases, they were identified as the sulfoxide (M1), sulfone (M2), carbamoyl glucuronide (M3), N-glucuronide (M4), and N-glucoside (M5) metabolites, respectively. The structure of M3, a less commonly seen carbamoyl glucuronide metabolite, was established using on-line H/D (hydrogen/deuterium) exchange experiments conducted by LC/MS. H/D exchange experiments were also used to distinguish the S-oxidation structures of M1 and M2 from hydroxylation. Herein, the application of deuterium oxide as the LC/MS mobile phase for structural elucidation of drug metabolites in biological matrices is demonstrated.     

Denaturant sensitive regions in creatine kinase identified by hydrogen/deuterium exchange

The GdmHCl-induced unfolding of creatine kinase (CK) has been studied by hydrogen/deuterium (H/D) exchange combined with mass spectrometry. MM-CK unfolded for various periods in different denaturant concentrations was pulsed-labeled with deuterium to identify different conformational intermediate states. For all denaturation times or GdmHCl concentrations, we observed variable proportions of only two species. The low-mass envelope of isotope peaks corresponds to a species that has gained about 10 deuteriums more than native CK, and the high-mass envelope to a completely deuterated species. To localize precisely the unfolded regions in the states highly populated during denaturation, the protein was digested with two proteases (pepsin and type XIII protease) after H/D exchange and rapid quenching of the reaction. The two sets of fragments obtained were analyzed by liquid chromatography coupled to mass spectrometry to determine the deuterium level in each fragment. Bimodal distributions of deuterium were found for most peptides, indicating that these regions were either folded or unfolded. This behavior is consistent with cooperative, localized unfolding. However, we observed a monomodal distribution of deuterium in two regions (1-12 and 162-186). We conclude that the increment of mass observed in the low-mass species of the intact protein (+10 Da) has its origin in these two segments. These regions, which are very sensitive to low GdmHCl concentrations, are involved in the monomer-monomer interface of CK and their perturbation is likely to weaken the dimeric structure. At higher denaturant concentration, this would induce dissociation of the dimer.     

Studying protein-carbohydrate interactions by amide hydrogen/deuterium exchange mass spectrometry

Protein-carbohydrate interactions play a significant role in biological processes. Presented here is the novel application of amide hydrogen/deuterium exchange mass spectrometry (amide exchange-MS) to the study of the interaction between a protein and its carbohydrate substrate. The degree of deuterium incorporation into hen egg lysozyme was monitored with and without substrate to verify that a carbohydrate can provide sufficiently stable protection of the amide hydrogen atoms in a protein's backbone from exchange with deuterated solvent. The substrate protected a number of amide hydrogens from exchange, implying that protein-carbohydrate binding systems will be compatible with amide exchange-MS. Endopolygalacturonase-II (EPG-II) from Aspergillus niger, a pectin-degrading enzyme, was chosen as the first carbohydrate-binding system to be extensively studied using quenched amide exchange-MS. Monitoring the changes in deuterium incorporation of EPG-II in the presence and absence of an oligomer of galacturonic acid implied the location of substrate binding. This study demonstrates the ability of amide exchange-MS to investigate protein-carbohydrate interactions.     

Fast gas-phase hydrogen/deuterium exchange observed for a DNA G-quadruplex

The gas-phase hydrogen/deuterium (H/D) exchange kinetics of DNA G-quadruplexes has been investigated using Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS). The quadruplex [(TGGGGT)4 . 3NH4+] undergoes very fast H/D exchange, in both the positive and in the negative ion modes, compared to DNA duplexes and other quadruplexes tested, and compared to the corresponding single-stranded TGGGGT. Substitution of NH4+ for K+ did not alter this fast H/D exchange, indicating that the hydrogens of the ammonium ions are not those exchanged. However, stripping of the interior cations of the quadruplex by source collision-induced dissociation (CID) in the positive ion mode showed that the presence of the inner cations is essential for the fast exchange to be possible. Molecular dynamics simulations show that the G-quadruplex is very rigid in the gas phase with NH4+ ions inside the tetrads. We suggest that the fast H/D exchange is favored by this rigid quadruplex conformation. This example illustrates that the concept that compact DNA structures exchange H for D slower than unfolded ones is a misconception.