X-ray scattering of non-crystalline biological systems using synchrotron radiation

This tutorial review gives an overview of the progress in the study of non-crystalline systems by X-ray scattering and closely related imaging techniques, made possible by advances in synchrotron radiation sources and instrumentation. A brief introduction to the techniques is followed by the presentation of a variety of recent applications to problems in fundamental and applied research in biochemistry and biophysics and food and pharmaceutical technology.     

Autoxidized phospholipids in hexane: nano-self-assemblies studied by synchrotron small-angle X-ray scattering

Synchrotron small-angle X-ray scattering (SAXS) was used to analyze the structure of self-assembled autoxidized phospholipids in a very dilute solution of hexane. In addition, it was used to build a self-consistent model of the aggregates, taking into account their inner heterogeneities and polydispersity. The scattering intensity from a dilute mixture of different types of noninteracting components of the phospholipid system was represented as a linear combination of partial intensities from the components weighted by their volume fractions. Applying this approach the final model of the system was described as a mixture of polydisperse reverse micelles and aggregates with spherical and cylindrical shapes. Spherical aggregates were represented as hollow spheres with inner radius 0.7 nm (occupied by water or hexane) and outer radius 1.5 nm. Geometrical parameters of the aggregates did not change much during the oxidation process, while the ratio of reverse micelles and aggregates in solution varied. The amount of the reverse micelles increased from very low to about 80%, whereas the content of other aggregates constantly reduced. The analysis performed in this study helps one to better understand the processes of phospholipid oxidation, which may occur in biological membranes.     

Analysis of mineral water from Brazil using total reflection X-ray fluorescence by synchrotron radiation

The total reflection X-ray fluorescence using synchrotron radiation (SRTXRF) has become a competitive technique for the determination of trace elements in samples that the concentrations are lower than 100 ng ml⁻¹. In this work, thirty-seven mineral waters commonly available in supermarkets of Rio de Janeiro, Brazil, were analyzed by SRTXRF. The measurements were performed at the X-Ray Fluorescence Beamline at Brazilian National Synchrotron Light Laboratory (LNLS), in Campinas, São Paulo, using a polychromatic beam with maximum energy of 20 keV for the excitation. Standard solutions with gallium as internal standard were prepared for calibration of the system. Mineral water samples of 10 μl were added to Perspex sample carrier, dried under infrared lamp and analyzed for 200 s measuring time. It was possible to determine the concentrations of the following elements: Si, S, K, Ca, Ti, Cr, Mn, Ni, Cu, Zn, Ge, Rb, Sr, Ba and Pb. The elemental concentration values were compared with the limits established by the Brazilian legislation.     

Mineral–water interfacial structures revealed by synchrotron X-ray scattering

Chemical reactions occurring at the mineral–water interface are controlled by an interfacial layer, nanometers thick, whose properties may deviate from those of the respective bulk mineral and water phases. The molecular-scale structure of this interfacial layer, however, is poorly constrained, and correlations between macroscopic phenomena and molecular-scale processes remain speculative. The application of high-resolution X-ray scattering techniques has begun to provide substantial new insights into the molecular-scale structure of the mineral–water interface. In this review, we describe the characteristics of synchrotron-based X-ray scattering techniques that make them uniquely powerful probes of mineral–water interfacial structures and discuss the new insights that have been derived from their application. In particular, we focus on efforts to understand the structure and distribution of interfacial water as well as their dependence on substrate properties for major mineral classes including oxides, carbonates, sulfates, phosphates, silicates, halides and chromates. We compare these X-ray scattering results with those from other structural and spectroscopic techniques and integrate these to provide a conceptual framework upon which to base an understanding of the systematic variation of mineral–water interfacial structures.     

Small angle X-ray scattering pole figures of semicrystalline polymers obtained by synchrotron radiation

A goniometer for measuring small angle X-ray scattering pole figures by using synchrotron radiation has been constructed. In order to obtain the scattering in a large range of scattering angles, position-sensitive detectors (Gabriel counter and vidicon system) are applied. The integrated intensity as well as the position and the half width of the maximum are determined as functions of the angle between the incident beam and the normal to the film surface of the sample. The time necessary to determine a pole figure was approximately 3 hours. Samples of poly(ethylene terephthalate) were drawn under different conditions: uniaxially and biaxially at 92°C under homogeneous deformation, and uniaxially at 40°C by necking. The influence of the drawing conditions on the orientation of the crystal lamellae was determined. The results of the small angle scattering are compared with pole figures obtained by wide angle scattering. In addition some results with polypropylene were obtained. The small angle X-ray scattering is strongly affected by the limited size of the crystals and by the incomplete regular arrangement of the crystals. This gives rise to difficulties in the interpretation of the results. The problem will be discussed.     

Multi-elemental analysis of produced water by synchrotron radiation total reflection X-ray fluorescence

The synchrotron radiation total reflection X-ray fluorescence (SRTXRF) technique was used for the analysis of heavy metals in produced water samples from oil field in Rio Grande do Norte, in order to determine potential sources of pollution. Since the inorganic components in produced water generally resembling sea water, pre-concentration procedures have been applied to increase the concentration of the analyte of interest and to minimize the salt matrix effects. This technique allows us to determine the contents of V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Hg and Pb in 20 produced water samples. The great majority of the sampling points presented low elemental concentration value. However, in some sample, the Fe, Ni, Cu, Zn and Hg concentration were higher than the established limits by the Brazilian legislation.     

Angle-resolved X-ray fluorescence spectrometry using synchrotron radiation at ELSA

Measurements on the centroid depth of ion-implanted phosphorus-in-silicon specimen by the method of angle-resolved, self-ratio X-ray fluorescence spectrometry (AR/SR/XFS) have been carried out using white synchrotron radiation (SR). The measurements were performed using a modified wavelength-dispersive fluorescence spectrometer. Problems due to the use of SR, like carbonaceous specimen contamination and sample heating were overcome by flooding the specimen chamber with helium and by pre-absorbing the non-exciting parts of the incident SR with suitable filters, respectively. The decaying primary intensity was monitored by measuring the compensation current of the photoelectrons emitted from a tungsten wire stretched across the primary beam. Results have been obtained for specimen with dose density levels of 10¹⁶ cm^–2 and 3×10¹⁵ cm^–2.     

Investigation of supported nickel catalysts by X-ray absorption spectrometry and X-ray diffraction using synchrotron radiation

In a previous paper a study of the supported nickel catalysts based on extended X-ray absorption fine structure spectroscopy was presented for analysis of the first coordination shell. The present study evidenced a strong deformation of the local structure of the metal due to its interaction with oxide support. The average particle size, microstrains and probability of faults, the particle size distribution function of supported Ni catalysts were determined by X-ray diffraction method. The method is based on Fourier analysis of experimental X-ray line profile (1 1 1), (2 0 0) and (2 2 0). The global structure is obtained with a fitting method based on the generalized Fermi function facilities for approximation. A chemisorption model was elaborated by correlation of the local and global structure connected with the specific surface areas. The results obtained on supported Ni catalysts which are used in H/D isotopic exchange reactions are reported. Both types of measurements were performed on the Beijing synchrotron radiation facilities.     

X-ray fluorescent analysis using synchrotron radiation: Subjects of research

The brief review has been presented about the application of X-ray fluorescent analysis using synchrotron radiation (storage ring VEPP-3, BINP SB RAS) for determination of elemental composition of the samples of different nature–biological and geological samples, objects of environment, archeological objects, and new materials. The feature of the presented research is the employment of the unique properties of synchrotron radiation, which allow analyzing samples of small mass (of the order of several milligrams), and also scanning core of bottom sediments with high resolution (less than 1 mm) that is not practical to realize by traditional analysis methods.     

Development of crazes in polycarbonate,investigated by ultra small angle X-ray scattering of synchrotron radiation

The development of crazes in polycarbonate is investigated with the method of ultra small angle X-ray scattering of synchrotron radiation. Measurements at T = 130°C are discussed. The two-dimensional scattering patterns are analysed by means of a simple fibrillar model of the crazes. The geometrical parameters of the crazes as a function of the macroscopic draw ratio λ_d are determined using a curve-fitting procedure. The craze fibril volume fraction ν_f shows a complex dependence on λ_d.     

X-ray fluorescence spectrometry with synchrotron radiation

X-ray fluorescence spectrometry (x.r.f.) can be done through excitation with synchrotron radiation. This permits multi-element determinations in the trace region with improved detection limits compared to conventional x.r.f. Detection limits are evaluated and compared with theoretically calculated values. For a beam diameter of 0.5 mm and a sample of 1 mg cm^?2, absolute detection limits are between 0.1 and 0.4 pg. The dependence of the detection limit on the atomic number is reduced, when white synchrotron radiation is used for excitation instead of monochromatic radiation. The optimum of the limit of detection on the Z-scale can be shifted to higher atomic numbers and improved through filtration of the primary radiation by aluminium absorbers. Preparation of samples on different polymeric films is discussed in relation to blank values.     

The VUV electronic spectroscopy of acetone studied by synchrotron radiation

The electronic state spectroscopy of acetone (CH3)2CO has been investigated using high-resolution VUV photoabsorption spectroscopy in the energy range 3.7-10.8 eV. New vibronic structure has been observed, notably in the low energy absorption band assigned to the 1(1)A(1) --> 1(1)A2 (ny --> pi*) transition. The local absorption maximum at 7.85 eV has been tentatively attributed to the 4(1)A1 (pi --> pi*) transition. Six Rydberg series converging to the lowest ionisation energy (9.708 eV) have been assigned as well as a newly-resolved ns Rydberg series converging to the first ionic excited state (12.590 eV). Rydberg orbitals of each series have been classified according to the magnitude of the quantum defect (delta) and are extended to higher quantum numbers than in the previous analyses.     

Structural studies of bleached melanin by synchrotron small-angle X-ray scattering

Small-angle X-ray scattering was used to measure the effects of chemical bleaching on the size and morphology of tyrosine-derived synthetic melanin dispersed in aqueous media. The average size as measured by the radius of gyration of the melanin particles in solution, at neutral to mildly basic pH, decreases from 16.5 to 12.5 angstroms with increased bleaching. The melanin particles exhibit scattering characteristic of sheet-like structures with a thickness of approximately 11 angstroms at all but the highest levels of bleaching. The scattering data are well described by the form factor for scattering from a pancake-like circular cylinder. These data are consistent with the hypothesis that unbleached melanin, at neutral to mildly basic pH, is a planar aggregate of 6- to 10-nm-sized melanin protomolecules, hydrogen bonded through their quinone and phenolic perimeters. The observed decrease in melanin particle size with increased bleaching is interpreted as evidence for deaggregation, most probably the result of oxidative disruption of hydrogen bonds and an increase in the number of charged, carboxylic acid groups, whereby the melanin aggregates disassociate into units composed of decreasing numbers of protomolecules.     

Localization of dibromophenol in DPPC/water liposomes studied by anomalous small-angle X-ray scattering

The localization of 2,4-dibromophenol molecules along the bilayer normal was investigated by anomalous small-angle X-ray scattering (ASAXS) with synchrotron radiation. The ASAXS measurements, executed at three different energies, provide the separation of the scattering of the bromine atoms of dibromophenol molecules from that of the whole system. Using a full q-range model, the localization of the dibromophenol molecules was characterized at a lower (0.1) and a higher (1) dibromophenol/lipid molar ratio corresponding to the gel and to the interdigitated phases of the vesicle matrix, respectively.     

Diamond detectors for synchrotron radiation X-ray applications

Due to its unique physical properties, diamond is a very appealing material for the development of electronic devices and sensors. Its wide band gap (5.5 eV) endows diamond based devices with low thermal noise, low dark current levels and, in the case of radiation detectors, high visible-to-X-ray signal discrimination (visible blindness) as well as high sensitivity to energies greater than the band gap. Furthermore, due to its radiation hardness diamond is very interesting for applications in extreme environments, or as monitor of high fluency radiation beams. In this work the use of diamond based detectors for X-ray sensing is discussed. On purpose, some photo-conductors based on different diamond types have been tested at the DAFNE-L synchrotron radiation laboratory at Frascati. X-ray sensitivity spectra, linearity and stability of the response of these diamond devices have been measured in order to evidence the promising performance of such devices.     

Photoresists comparative analysis using soft X-ray synchrotron radiation and time-of-flight mass spectrometry

Positive photoresists are widely used in lithographic process for the fabrication of relief components. When exposed to UV radiation they suffer chemical reactions modifying their chemical and physical properties. Aiming to follow molecular modifications among two different photoresists unexposed and previously exposed to ultraviolet light we have employed spectroscopic techniques coupled with mass spectrometry in the study of the AZ-1518 and AZ-4620 photoresists. The photon stimulated ion desorption (PSID) technique following the S K-edge NEXAFS spectrum was employed at the brazilian synchrotron light source (LNLS), during single-bunch operation and using time-of-flight mass spectrometry (TOF-MS) for ion analysis. NEXAFS and PSID mass spectra on both AZ-1518 and AZ-4620 photoresists (unexposed and exposed) were obtained and relative desorption ion yield curves determined for the main fragments as a function of the photon energy. They present marked different PSID spectra. Fragments related to the photochemical decomposition of the AZ-1518 photoresist could be clearly identified differently from the AZ-4620. Studies on the hardness of both photoresists were performed using O₂ plasma reactive ion etching (RIE) technique, analyzed by scanning electron microscopy (SEM) and used to explain different desorption yields in the PSID spectra. These results show that the PSID technique is adequate to investigate structural changes in molecular level in different unexposed and exposed photoresists, which is crucial for improving our knowledge about the breakup process.     

X-ray scattering and multivariate analysis for classification of organic samples: a comparative study using Rh tube and synchrotron radiation

This work compares the performance of X-ray tube induced and synchrotron induced energy dispersive X-ray fluorescence in generating scattering profiles when organic samples are irradiated. In the first case, this effect produces sharper peaks, well defined in the spectra, whereas synchrotron-induced scatter are seen as broad bands. These effects may be used for classifying simple materials like graphite, coke, activated carbon and carbon nanotubes, all having the same composition but different structures, using multivariate data analysis. In a second sample set, the method was applied to liquid samples of different alcohols (methanol, ethanol, 1-propanol and 2-propanol). Classifications were obtained in both cases independent of the X-ray source (synchrotron radiation or X-ray tube radiation), showing that the use of chemometric tools combined with X-ray spectrometry can efficiently distinguish organic samples by using scattering effects.     

Electron scattering by water and alcohol molecules

Broad resonances in electron scattering by H₂O, aliphatic alcohols and phenol are reported.