Vibrational analysis of free and hydrogen bonded complexes of nicotinamide and picolinamide

Harmonic and anharmonic vibrations of free nicotinamide (NIA) and picolinamide (PIA) molecules together with their hydrogen bonded complexes H₂O–NIA and H₂O–PIA have been studied by means of density functional method. The calculation results of the vibrational spectra of free molecules have been investigated and are compared to the available experimental spectra. The vibrational wavenumbers of both molecules have also been calculated by polarizable continuum model (PCM) that represents the solvent as a polarizable continuum and places the solute in a cavity within the solvent (water is chosen as the solvent in this study). The results of PCM calculations and the H₂O–NIA, H₂O–PIA complexes, are used to investigate the H-bonding interactions of both molecules with the water molecule. The harmonic wavenumbers have been scaled by proper factors obtained by comparing the observed versus calculated wavenumbers and it is shown that anharmonic corrections on the vibrational spectra provided a better agreement between the observed and calculated wavenumbers compared to the results obtained by scaling factor method.     

Infrared spectroscopic studies of hydrogen-bonded complexes of water with oxygen bases—V. The effect of temperature on the OH-stretching bands of water molecules dissolved in some ketones

The infrared spectra, in the OH-stretching region, of H₂O molecules in dilute solution in cyclohexanone and in di-n-propyl ketone have been recorded at a series of temperatures between 15 and 85°C. The observed bands have been resolved into their component absorptions, based on the assignments established earlier, and the effects of temperature on the wavenumbers and their separations, the half-widths and the component intensities have been noted. The results have been interpreted in terms of a shift in the equilibrium between the 1 : 1 and 2 : 1 hydrogen-bonded solvent: water complexes which exist in such solutions.     

Time‐dependent density functional theory study on the electronic excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in aqueous solution: 4AP and 4AP–(H2O)1,2 clusters

The time‐dependent density functional theory (TDDFT) method has been carried out to investigate the excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in hydrogen‐donating water solvent. The infrared spectra of the hydrogen‐bonded solute?solvent complexes in electronically excited state have been calculated using the TDDFT method. We have demonstrated that the intermolecular hydrogen bond C? O···H? O and N? H···O? H in the hydrogen‐bonded 4AP?(H₂O)₂ trimer are significantly strengthened in the electronically excited state by theoretically monitoring the changes of the bond lengths of hydrogen bonds and hydrogen‐bonding groups in different electronic states. The hydrogen bonds strengthening in the electronically excited state are confirmed because the calculated stretching vibrational modes of the hydrogen bonding C?O, amino N? H, and H? O groups are markedly red‐shifted upon photoexcitation. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electroniclly excited state of chromophores in hydrogen‐donating solvents exists in many other systems in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Étude par spectroscopie infrarouge de la structure du cation mg(h2o)62+ dans quelques sels de magnésium hydratés

The infrared spectra of eight hexahydrated magnesium salts have been investigated in the 4000-2000 cm^?1 range. The stretching H₂O, D₂O and HDO water bands are discussed. Two types of hydrogen bond depending on the acceptor properties of the anion can be distinguished: the water molecules are bonded to anions or to other water molecules.     

Raman Combinations and Stretching Overtones from Water, Heavy Water, and NaCl in Water at Shifts to ca. 7000 cm−1

Photographic Raman spectra were obtained at shifts to ca. 7000 cm^–1 for pure water and for a saturated aqueous solution of NaCl using argon ion laser excitation. Raman spectra were also obtained photoelectrically for H₂O and D₂O between ca. 2500 and ca. 7000 cm^–1 using 248-nm excimer laser excitation and boxcar detection. Overtone and combination assignments are presented for H₂O and D₂O. The first IR OH-stretching overtone from water occurs 215 cm^–1 above the first Raman OH-stretching overtone because the IR overtones are dominated by asymmetric stretching. The second OH-stretching Raman overtone from water is estimated to occur near 10,020 ± 20 cm^–1, with 9950 cm^–1 as a lower limit.     

An intermolecular perturbation approach to hydrogen bondings in systems in the ground and excited electronic states

The intermolecular interaction energy for binary systems in the ground and excited electronic states was partitioned into the Coulomb, exchange-repulsion, induction, dispersion and charge-transfer interaction terms by the perturbation expansion method. The various interaction terms were evaluated for the hydrogen bondings in (HF)₂, (H₂O)₂, (CH₃OH)₂, (RCOOH)₂, and HF·H₂O in various geometrical configurations. It has been found that the Coulombic interaction plays a dominant role in the stability of these hydrogen bonded systems. The method was further applied to the HCOOH·H₂O codimer in both the ground and excited singlet electronic states. The results were in accord with the well-known water solvent effects on the shifts of absorption spectral bands.     

Structural,infrared spectral and thermogravimetric analysis of a hydrogen-bonded assembly of cobalt(II) and nickel(II) mixed complex cations with hexamethylenetetraamine and aqua ligands: {[M(hmt)2(H2O)4][M(H2O)6]}(SO4)2·6H2O

The synthesized cobalt(II) and nickel(II) complexes {[M(hmt)₂(H₂O)₄][M(H₂O)₆]}(SO₄)₂·6H₂O [M?=?Co(II) (1) and Ni(II) (2), hmt?=?hexamethylenetetraamine] share the same general formula and chemical name {[bis(hexamethylenetetraamine)tetraaquametal(II)][hexaaquametal(II)]} disulfate hexahydrate. Complexes 1 and 2 have been characterized by elemental analysis, infrared spectroscopy, thermal analysis and magnetic moment determination. Each complex has two different cationic complexes co-crystallizing with the sulfate anions. The crystal structure of 1has been determined. Both complex cations in 1 have distorted octahedral geometry and they are linked to the sulfate anions through the coordinated and lattice water molecules. Each sulfate anion is hydrogen bonded to ten water molecules; two of its oxygen atoms have two hydrogen bonds each while the other two oxygen atoms have three hydrogen bonds each. The three uncoordinated nitrogen atoms of hmt in each [Co(hmt)₂(H₂O)₄]²⁺ cation are hydrogen bonded to water molecules of adjacent [Co(H₂O)₆]²⁺ cations. The thermal decomposition of 1 has been investigated further by analyzing the FTIR spectra of the residues formed from each decomposition step, and the data have contributed to establishing the thermal decomposition pathway of both 1and 2.     

Hydrogenation of olefins using water and zinc metal catalyzed by a rhodium complex

The hydrogenation of olefins using H₂O or D₂O as a hydrogen source and zinc metal as a reducing agent has been found to be catalyzed by a rhodium complex. α,β-Unsaturated ketones also underwent hydrogenation, affording the corresponding saturated ketones selectively.     

A novel three‐dimensional framework constructed by 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole and infinite chains of hydrogen‐bonded water molecules

A novel three‐dimensional framework of 2‐[(1H‐imidazol‐1‐yl)methyl]‐1H‐benzimidazole dihydrate, C₁₁H₁₀N₄·2H₂O or L·2H₂O, (I), in which L acts as both hydrogen‐bond acceptor and donor in the supramolecular construction with water, has been obtained by self‐assembly reaction of L with H₂O. The two independent water molecules are hydrogen bonded alternately with each other to form a one‐dimensional infinite zigzag water chain. These water chains are linked by the benzimidazole molecules into a three‐dimensional framework, in which each organic molecule is hydrogen bonded by three water molecules. This study shows that the diversity of hydrogen‐bonded patterns plays a crucial role in the formation of the three‐dimensional framework. More significantly, as water molecules are important in contributing to the conformation, stability, function and dynamics of biomacromolecules, the infinite chains of hydrogen‐bonded water molecules seen in (I) may be a useful model for water in other chemical and biological processes.     

Hexaaquacobalt(II) bis[hydrogen bis(4‐carboxyphenylphosphonate)] dihydrate

The Co^II ion in the title complex salt, [Co(H₂O)₆](C₁₄H₁₃O₁₀P₂)₂·2H₂O or [Co(H₂O)₆][H(C₇H₆O₅P)₂]·2H₂O, resides on an inversion centre and exhibits an octahedral environment formed by six aqua ligands. Two unique acid residues share an H atom between their phosphonate groups, forming a complex monoanion with a very short (P)O...H...O(P) hydrogen bond of 2.435 (2) Å. The crystal structure is layered and consists of thick organic bilayers with hydrated metal [Co(H₂O)₆]²⁺ ions arranged between them. The interior of the bilayer is occupied by the aromatic portions of the complex monoanions and the carboxyl groups, which form hydrogen‐bonded R₂²(8) ring motifs. The phosphonate groups are arranged outwards in order to form the hydrogen‐bonded surfaces of the bilayer. Electrostatic and multiple hydrogen‐bond interactions, established between the coordination and solvent water molecules and the phosphonate O atoms, hold neighbouring bilayers together.     

Critical comments and erratum: Intramolecular OH … S ⇌ O … HS proton transfer equilibrium in N-(o-hydroxythiobenzoyl)piperidines and -morpholines in acetone-d6 solution: i.r. and NMR studies

The interpretations of our previous paper have been critically reevaluated. The conclusions were in disagreement with the theory of solute—solvent interaction and literature data on proton transfer in intramolecular hydrogen bonds. We now interpret the NMR and i.r. spectra from our previous paper as indicating the exchange ArOH + D₂O⇌ArOD + HOD and ArOH + HOD⇌ArOD + H₂O and not the proton transfer OH … S⇌O … HS. It is found that the integrated intensity of the stretching vibration of the intramolecular OH … S hydrogen bond in 1-(2′-hydroxythiobenzoyl)piperidine in acetone-d₆ solution is greater than that of the deuterated species.     

Selective 1,2-dihalogenation and oxy-1,1-dihalogenation of alkynes by N-halosuccinimides

1,2-Dihalogenation and oxy-1,1-dihalogenation of alkynes by N-halosuccinimides can be selectively realized through using different reaction conditions. α,β-Dihalo alkenes were obtained exclusively using THF as solvent without using any catalyst, while α,α-dihalo ketones were synthesized using a mixed solvent of THF and H₂O in the presence of FeCl₃·6H₂O. Terminal aromatic alkynes are smoothly transformed into α,α-dihalo ketones on water without a catalyst.     

A new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate and its hydrogen‐bonded fivefold interpenetrated CdSO4 network

Single crystals of a new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate (bix·2H₂O), C₁₄H₁₄N₄·2H₂O, have been obtained by the hydrothermal method. The asymmetric unit is composed of two independent half‐bix molecules, one on an inversion center and one on a twofold axial site, and two water molecules. The disordered water molecules link into discrete tetrameric water units via two O—H...O hydrogen bonds, forming planar R₄⁴(8) rings. These tetrameric water units and bix molecules are further linked by two O—H...N hydrogen bonds into a three‐dimensional network in which an (106) hydrogen‐bonded ring is observed. These large rings lead to the formation of a fivefold interpenetrated network. If both the tetrameric water units and the bix molecules can be regarded as connected nodes, one single three‐dimensional net can then be rationalized as a CdSO₄ network. This study indicates that topological methodology can be applied in some cases in order to understand the inherent characteristics of some hydrogen‐bonded supramolecular assemblies.     

New pseudopolymorphs of 5‐fluorocytosine

In order to better understand the interaction between the pharmaceutically active compound 5‐fluorocytosine [4‐amino‐5‐fluoropyrimidin‐2(1H)‐one] and its receptor, hydrogen‐bonded complexes with structurally similar bonding patterns have been investigated. During the cocrystallization screening, three new pseudopolymorphs of 5‐fluorocytosine were obtained, namely 5‐fluorocytosine dimethyl sulfoxide solvate, C₄H₄FN₃O·C₂H₆OS, (I), 5‐fluorocytosine dimethylacetamide hemisolvate, C₄H₄FN₃O·0.5C₄H₉NO, (II), and 5‐fluorocytosine hemihydrate, C₄H₄FN₃O·0.5H₂O, (III). Similar hydrogen‐bond patterns are observed in all three crystal structures. The 5‐fluorocytosine molecules form ribbons with repeated R₂²(8) dimer interactions. These dimers are stabilized by N—H...N and N—H...O hydrogen bonds. The solvent molecules adopt similar positions with respect to 5‐fluorocytosine. Depending on the hydrogen bonds formed by the solvent, the 5‐fluorocytosine ribbons form layers or tubes. A database study was carried out to compare the hydrogen‐bond pattern of compounds (I)–(III) with those of other (pseudo)polymorphs of 5‐fluorocytosine.     

Two terphenyl‐based diol hosts and corresponding solvent inclusions with dimethylformamide and acetonitrile

Having reference to an elongated structural modification of 2,2′‐bis(hydroxydiphenylmethyl)biphenyl, (I), the two 1,1′:4′,1′′‐terphenyl‐based diol hosts 2,2′′‐bis(hydroxydiphenylmethyl)‐1,1′:4′,1′′‐terphenyl, C₄₄H₃₄O₂, (II), and 2,2′′‐bis[hydroxybis(4‐methylphenyl)methyl]‐1,1′:4′,1′′‐terphenyl, C₄₈H₄₂O₂, (III), have been synthesized and studied with regard to their crystal structures involving different inclusions, i.e. (II) with dimethylformamide (DMF), C₄₄H₃₄O₂·C₂H₆NO, denoted (IIa), (III) with DMF, C₄₈H₄₂O₂·C₂H₆NO, denoted (IIIa), and (III) with acetonitrile, C₄₈H₄₂O₂·CH₃CN, denoted (IIIb). In the solvent‐free crystals of (II) and (III), the hydroxy H atoms are involved in intramolecular O—H...π hydrogen bonding, with the central arene ring of the terphenyl unit acting as an acceptor. The corresponding crystal structures are stabilized by intermolecular C—H...π contacts. Due to the distinctive acceptor character of the included DMF solvent species in the crystal structures of (IIa) and (IIIa), the guest molecule is coordinated to the host via O—H...O=C hydrogen bonding. In both crystal structures, infinite strands composed of alternating host and guest molecules represent the basic supramolecular aggregates. Within a given strand, the O atom of the solvent molecule acts as a bifurcated acceptor. Similar to the solvent‐free cases, the hydroxy H atoms in inclusion structure (IIIb) are involved in intramolecular hydrogen bonding, and there is thus a lack of host–guest interaction. As a result, the solvent molecules are accommodated as C—H...N hydrogen‐bonded inversion‐symmetric dimers in the channel‐like voids of the host lattice.     

Novel Hydrogen-bonded Three-dimensional Supramolecular Architectures Containing 2D Honeycomb Networks or 2D Grids

Two new supramolecular complexes,[Cu(H_2dhbd)(3-pyOH)(H_2O)]_2·3-pyOH·2H_2O(1)and[Cu_2(dhbd)(dpa)_2-(H_2O)]·6H_2O(2)(H_4dhbd=2,3-dihydroxybutanedioic acid,3-pyOH=3-hydroxypyddine,dpa=2,2'-dipyridylamine),have been synthesized in aqueous solution and characterized by single-crystal X-ray diffraction,elemental analyses,UV-Vis and IR spectra,and TGA analysis.X-ray structural analysis revealed that,through four pairs of strong O…H—O hydrogen bonds,the cyclic dinuclear units in 1 together with four adjacent neighbors are connected into a 2Dhoneycomb network encapsulating free 3-pyOH ligands.Unexpectedly,the water-dimers are fixed in interlayers of2D honeycomb network and act as hydrogen-bond bridging to further extend these 2D networks into 3D hydro-gen-bonded framework.Complex 2 includes interesting 2D grids constructed from chiral dinuclear units throughstrong O…H—O and O…H—N hydrogen bonding,which are extended through other crystallization water mole-cules into three dimension with channels.Variable-temperature magnetic susceptibility measurements for bothcomplexes indicate the presence of weak antiferromagnetic exchange interactions between adjacent copper(Ⅱ)ions.     

Mechanism of oxidation of some aliphatic ketones by N-bromosuccinimide in acidic media

Kinetics of the oxidation of methyl n-propyl ketone and methyl isobutyl ketone by N-bromosuccinimide (NBS) have been studied in perchloric acid media in presence of mercuric acetate. A zero order dependence to N-bromosuccinimide and a first order dependence to both ketones and hydrogen ion concentrations have been observed. Sodium perchlorate, mercuric acetate and succinimide additions have negligible effect while methanol addition has a positive effect on the reaction rate. A solvent isotope effect (k₀D₂O/K₀H₂O = 2.3-2.7 and 2.4-2.8 for MeCOn.pr and MeCoi-Bu, respectively) has been observed at 35°. Kinetic investigations have revealed that the order of reactivity is methyl n-propyl ketone > methyl isobutyl ketone. Various thermodynamic parameters have been computed and corresponding 1,2-diketones were found to be the products. A suitable mechanism in conformity with the above observations has been proposed.     

Simultaneous Sensing of H2O,D2O and HOD through Peroxo Vibrations

Detection of HOD simultaneously in the presence of a mixture of H₂O and D₂O is still an experimental challenge. Till date, there is no literature report of simultaneous detection of H₂O, D₂O and HOD based on vibrational spectra. Herein we report simultaneous quantitative detection of H₂O, D₂O and HOD in the same reaction mixture with the help of bridged polynuclear peroxo complex in absence and presence of Au nanoparticles on the basis of a peroxide vibrational mode in resonance Raman and surface enhanced resonance Raman spectrum. We synthesize bridged polynuclear peroxo complex in different solvent mixture of H₂O and D₂O. Due to the formation of different nature of hydrogen bonding between peroxide and solvent molecules (H₂O, D₂O and HOD), vibrational frequency of peroxo bond is significantly affected. Mixtures of different H₂O and D₂O concentrations produce different HOD concentrations and that lead to different intensities of peaks positioned at 897, 823 and 867 cm⁻¹ indicating H₂O, D₂O and HOD, respectively. The lowest detection limits (LODs) were 0.028 mole fraction of D₂O in H₂O and 0.046 mole faction of H₂O in D₂O. In addition, for the first time the results revealed that the cis-peroxide forms two hydrogen bonds with solvent molecules.     

Streptidinium sulfate monohydrate

In streptidinium sulfate monohydrate {systematic name: 1,1′‐[(1S,3R,4S,6R)‐2,4,5,6‐tetrahydroxycyclohexane‐1,3‐diyl]diguanidinium sulfate monohydrate}, C₈H₂₀N₆O₄²⁺·SO₄²⁻·H₂O, at 100 (2) K, the components are arranged in double helices based on hydrogen bonds. One helix contains streptidinium cations and the other contains disordered sulfate anions and solvent water molecules. The helices are linked into a three‐dimensional hydrogen‐bonded network by O—H...O and N—H...O hydrogen bonds.     

Two phosphate–imidazole complexes with and without a hydrogen‐bonded guest mol­ecule

The mol­ecular structures of the complexes imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thio­diphenyl phosphate, C₃H₅N₂⁺·C₂₂H₂₈O₄PS⁻, (I), and imidazolium 6,6′‐di‐tert‐butyl‐4,4′‐dimethyl‐2,2′‐thio­diphenyl phosphate diisopropyl hydrazo­dicarboxyl­ate hemisolvate, C₃H₅N₂⁺·C₂₂H₂₈O₄PS⁻·0.5C₈H₁₆N₂O₄, (II), have been determined. While (I) forms the expected hydrogen‐bonded chain utilizing the two imidazole N‐bound H atoms, in (II), the substituted hydrazine solvent mol­ecule inserts itself between the chains. Compound (I) exhibits a strong N—H⋯O hydrogen bond, with an N⋯O distance of 2.603 (2) Å. The hydrazine solvent molecule in (II) lies about a twofold axis and the N‐bound H atoms are involved in bifurcated hydrogen bonds with phosphate O atoms. A C‐bound H atom of the imidazolium cation is involved in a C—H⋯O inter­action with a carbonyl O atom of the hydrazine solvent mol­ecule.