Pyrrole‐2‐carbaldehyde Thiosemicarbazonates of Nickel(II) and Palladium(II): Synthesis,Structure, and Spectroscopy

Complexes of pyrrole‐2‐carbaldehyde thiosemicarbazones, [(C₄H₄N⁴)(H)C²=N³–N²(H)–C¹(=S)–N¹HR; R = Ph, H₂L¹; Me, H₂L²; H, H₂L³] with nickel(II) and palladium(II) are described. The reaction of nickel(II) acetate with H₂L¹ in methanol in 1:1 molar ratio yielded a complex of composition, [Ni(κ²‐N³,S‐HL¹)₂] ( 1 ). Likewise reaction of NiCl₂ with H₂L² in 1:1 molar ratio in acetonitrile in the presence of triethylamine base followed by the addition of pyridine did not yield the anticipated [Ni(κ³‐N⁴,N³,S‐L²)(py)] complex, moreover a bis‐square‐planar complex, [Ni(κ²‐N³,S‐HL²)₂] ( 2 ) was formed. However, in the presence of bipyridine (bipy), it yielded the addition product, [Ni(κ²‐N³,S‐HL²)₂(κ²‐N, N‐bipy)] ( 3 ). Reaction of PdCl₂(κ²‐P, P–PPh₂–CH₂–PPh₂) with H₂L³ in toluene in the presence of triethylamine has yielded a complex of stoichiometry, [Pd(κ³‐N⁴,N³,S–L³)(κ¹‐P–PPh₂–CH₂–P(O)Ph₂] ( 4 ). The ligands (HL¹)^– and (HL²)^– are chelating to Ni^II metal atom as anions binding through N³,S‐donor atoms with pendant pyrrole groups, and (L³)^2– is chelating to the Pd^II metal atom as dianion through N⁴,N³,S‐donor atoms (pyrrole is N⁴‐bonded). Fourth site in 4 is bonded to one P‐donor atom of PPh₂–CH₂–P(O)Ph₂, whose pendant –PPh₂ group involves auto oxidation to –P(O)PPh₂ during reaction. These complexes were characterized using analytical data, IR, NMR (¹H, ³¹P) spectroscopy and X‐ray crystallography. Complexes 1 , 2 , and 4 have square‐planar arrangement, whereas complex 3 is octahedral.     

The conformations of two copper(I) complexes of 1H‐benzimidazole‐2(3H)‐thione and thiosaccharinate

(Acetonitrile‐1κN)[μ‐1H‐benzimidazole‐2(3H)‐thione‐1:2κ²S:S][1H‐benzimidazole‐2(3H)‐thione‐2κS]bis(μ‐1,1‐dioxo‐1λ⁶,2‐benzothiazole‐3‐thiolato)‐1:2κ²S³:N;1:2κ²S³:S³‐dicopper(I)(Cu—Cu), [Cu₂(C₇H₄NO₂S₂)₂(C₇H₆N₂S)₂(CH₃CN)] or [Cu₂(tsac)₂(Sbim)₂(CH₃CN)] [tsac is thiosaccharinate and Sbim is 1H‐benzimidazole‐2(3H)‐thione], (I), is a new copper(I) compound that consists of a triply bridged dinuclear Cu—Cu unit. In the complex molecule, two tsac anions and one neutral Sbim ligand bind the metals. One anion bridges via the endocyclic N and exocyclic S atoms (μ‐S:N). The other anion and one of the mercaptobenzimidazole molecules bridge the metals through their exocyclic S atoms (μ‐S:S). The second Sbim ligand coordinates in a monodentate fashion (κS) to one Cu atom, while an acetonitrile molecule coordinates to the other Cu atom. The Cu^I—Cu^I distance [2.6286 (6) Å] can be considered a strong `cuprophilic' interaction. In the case of [μ‐1H‐benzimidazole‐2(3H)‐thione‐1:2κ²S:S]bis[1H‐benzimidazole‐2(3H)‐thione]‐1κS;2κS‐bis(μ‐1,1‐dioxo‐1λ⁶,2‐benzothiazole‐3‐thiolato)‐1:2κ²S³:N;1:2κ²S³:S³‐dicopper(I)(Cu—Cu), [Cu₂(C₇H₄NO₂S₂)₂(C₇H₆N₂S)₃] or [Cu₂(tsac)₂(Sbim)₃], (II), the acetonitrile molecule is substituted by an additional Sbim ligand, which binds one Cu atom via the exocylic S atom. In this case, the Cu^I—Cu^I distance is 2.6068 (11) Å.     

1,2‐Di­cyano‐1,2‐bis­(imidazolidine‐2‐thione)­digold(I) and 2,2‐di­cyano‐1,1‐bis­(di­methyl­thio­urea)­digold(I)

Gold(I) cyanide forms complexes with imidazolidine‐2‐thione (etu) and di­methyl­thio­urea (dmtu) with the formula [Au₂(CN)₂L₂], i.e. the title complexes di­cyano‐1κC,2κC‐bis(imidazolidine‐2‐thione)‐1κS,2κS‐digold(I)(Au—Au), [Au₂(CN)₂(C₃H₆N₂S)₂], and di­cyano‐1κ²C‐bis(N,N′‐di­methyl­thio­urea)‐2κ²S‐digold(I)(Au—Au), [Au₂(CN)₂(C₃H₈N₂S)₂]. In the etu complex, two approximately linear (etu)AuCN groups are held together by a weak homopolar Au—Au bond [3.117 (1) Å], with a torsion angle of 61 (3)° between the two groups. In the dmtu complex, an approximately linear Au(dmtu)₂ group is bound to an approximately linear Au(CN)₂ group by a weak heteropolar Au—Au bond [3.091 (1) Å], with a torsion angle of 83 (5)° between the two groups.     

Two isomers of Pd2(S2NC7H4)4

The dichloromethane solvates of the isomers tetrakis(μ‐1,3‐benzothiazole‐2‐thiolato)‐κ⁴N:S;κ⁴S:N‐dipalladium(II)(Pd—Pd), (I), and tetrakis(μ‐1,3‐benzothiazole‐2‐thiolato)‐κ⁶N:S;κ²S:N‐dipalladium(II)(Pd—Pd), (II), both [Pd₂(C₇H₄NS₂)₄]·CH₂Cl₂, have been synthesized in the presence of (o‐isopropylphenyl)diphenylphosphane and (o‐methylphenyl)diphenylphosphane. Both isomers form a lantern‐type structure, where isomer (I) displays a regular and symmetric coordination and isomer (II) an asymmetric and distorted structure. In (I), sitting on an centre of inversion, two 1,3‐benzothiazole‐2‐thiolate units are bonded by a Pd—N bond to one Pd atom and by a Pd—S bond to the other Pd atom, and the other two benzothiazolethiolate units are bonded to the same Pd atoms by, respectively, a Pd—S and a Pd—N bond. In (II), three benzothiazolethiolate units are bonded by a Pd—N bond to one Pd atom and by a Pd—S bond to the other Pd atom, and the fourth benzothiazolethiolate unit is bonded to the same Pd atoms by, respectively, a Pd—S bond and a Pd—N bond.     

Two isomorphous ZnII/CoII complexes with tri‐tert‐butoxysilanethiol and histamine,and (4‐hydroxymethyl‐1H‐imidazole‐κN)bis(tri‐tert‐butoxysilanethiolato‐κ2O,S)zinc(II)

The complexes [2‐(1H‐imidazol‐4‐yl‐κN³)ethylamine‐κN]bis(tri‐tert‐butoxysilanethiolato‐κS)cobalt(II), [Co(C₁₂H₂₇O₃SSi)₂(C₅H₉N₃)], and [2‐(1H‐imidazol‐4‐yl‐κN³)ethylamine‐κN]bis(tri‐tert‐butoxysilanethiolato‐κS)zinc(II), [Zn(C₁₂H₂₇O₃SSi)₂(C₅H₉N₃)], are isomorphous. The central Zn^II/Co^II ions are surrounded by two S atoms from the tri‐tert‐butoxysilanethiolate ligand and by two N atoms from the chelating histamine ligand in a distorted tetrahedral geometry, with two intramolecular N—H...O hydrogen‐bonding interactions between the histamine NH₂ groups and tert‐butoxy O atoms. Molecules of the complexes are joined into dimers via two intermolecular bifurcated N—H...(S,O) hydrogen bonds. The Zn^II atom in [(1H‐imidazol‐4‐yl‐κN³)methanol]bis(tri‐tert‐butoxysilanethiolato‐κ²O,S)zinc(II), [Zn(C₁₂H₂₇O₃SSi)₂(C₄H₆N₂O)], is five‐coordinated by two O and two S atoms from the O,S‐chelating silanethiolate ligand and by one N atom from (1H‐imidazol‐4‐yl)methanol; the hydroxy group forms an intramolecular hydrogen bond with sulfur. Molecules of this complex pack as zigzag chains linked by N—H...O hydrogen bonds. These structures provide reference details for cysteine‐ and histidine‐ligated metal centers in proteins.     

Polymeric μ‐cyano‐di­cyano­nickelate(II)‐μ‐cyano‐trans‐bis­[N‐(2‐hydroxyethyl)ethyl­enedi­amine]­cadmium(II)

The title compound, catena‐poly­[[μ‐cyano‐1:2κ²C:N‐di­cyano‐1κ²C‐trans‐bis­[N‐(2‐hydroxy­ethyl)­ethane‐1,2‐di­amine‐2κ²N,N′]­cadmium(II)­nickel(II)]‐μ‐cyano‐1:2′κ²C:N], [CdNi(CN)₄(C₄H₁₂N₂O)₂], consists of alternating square‐planar Ni(CN)₄ fragments, formally dianionic, and Cd(hydet‐en)₂ moieties [hydet‐en is N‐(2‐hydroxy­ethyl)­ethyl­ene­di­amine], with the two bridging cyanide ligands in a mutually trans disposition at the Ni atom and cis at the Cd atom. The resulting one‐dimensional zigzag chain structure has the Ni atom on an inversion center, while the distorted octahedron centered on the Cd atom lies on a twofold axis. The polymer chains are connected into undulating sheets by weak interchain N—H⋯N, N—H⋯O and O—H⋯N hydrogen bonds, which are also present between successive sheets.     

(2-Chlorobenzyl)tris(2-pyridinethiolato)tin(IV)

In the title compound, (2-chloro­benzyl)­tris­(pyridine-2-thiol­ato)-κ²N,S;κ²N,S;κS-tin(IV), [Sn(C₇H₆Cl)(C₅H₄NS)₃], two of the three pyridine-2-thiol­ato ligands (SPy) are bidentate and one is monodentate. The bonding C atom of the 2-chloro­benzyl group, the S atom of the monodentate SPy and the S and N atoms of the two bidentate SPy ligands form a distorted octahedron around the Sn atom. The three S atoms and the N atom of one of the bidentate SPy ligands occupy the equatorial positions, while the N atom of the second bidentate SPy ligand and the C(CH₂) atom are axial. The axial N—Sn—C angle of 157.9 (1)° demonstrates the heavy distortion of the octahedron.     

Bis{2‐[(phenylimino)ethyl]‐1H‐pyrrol‐1‐ido‐κ2N,N′}nickel(II): a supramolecular structure formed by C—H...π hydrogen bonds

In the title compound, [Ni(C₁₂H₁₁N₂)₂], the Ni^II cation lies on an inversion centre and has a square‐planar coordination geometry. This transition metal complex is composed of two deprotonated N,N′‐bidentate 2‐[(phenylimino)ethyl]‐1H‐pyrrol‐1‐ide ligands around a central Ni^II cation, with the pyrrolide rings and imine groups lying trans to each other. The Ni—N bond lengths range from 1.894 (3) to 1.939 (2) Å and the bite angle is 83.13 (11)°. The Ni—N(pyrrolide) bond is substantially shorter than the Ni—N(imino) bond. The planes of the phenyl rings make a dihedral angle of 78.79 (9)° with respect to the central NiN₄ plane. The molecules are linked into simple chains by an intermolecular C—H...π interaction involving a phenyl β‐C atom as donor. Intramolecular C—H...π interactions are also present.     

A nitronyl nitro­xide complex of ­nickel(II) with nitrate as a ligand

The complex cation in [4,5-di­hydro-4,4,5,5-tetra­methyl-2-(2-pyridyl-κN)­imidazol-1-oxyl 3-oxide-κO³](nitrato-κ²O,O′)(N,N,N′,N′-tetra­methyl-1,2-ethanedi­am­ine-κ²N,N′)­nickel(II) hexafluorophosphate dichloromethane solvate, [Ni(NO₃)(C₆H₁₆N₂)(C₁₂H₁₆N₃O₂)]PF₆·CH₂Cl₂, is the first example of a nitro­nyl nitro­xide complex of a transition metal ion having d electrons in which nitrate is coordinated as a bidentate ligand. Owing to the smaller steric requirement of NO₃⁻, the Ni—­O(nitro­xide) bond length [2.014 (2) Å] is remarkably shorter than that in the corresponding ­β-­diketonate complexes [2.052 (4)–2.056 (2) Å].     

Different intermolecular interactions in azido[2‐(diphenylphosphino)benzaldehyde semicarbazonato‐κ2P,N1,O]nickel(II)

The title compound, [Ni(C₂₀H₁₇N₃OP)(N₃)], is the first complex with a semicarbazide‐based ligand having a P atom as one of the donors. The influence of the P atom on the deformation of the coordination geometry of the Ni^II ion is evident but less expressed than in the cases of complexes with analogous seleno‐ and thiosemicarbazide ligands. The torsion angles involving the two bonds formed by the P atom within the six‐membered chelate ring have the largest values [C—P—Ni—N = 24.3 (2)° and C—C—P—Ni = −24.2 (4)°], suggesting that the P atom considerably influences the conformation of the ring. Two types of N—H...N hydrogen bond connect the complex units into chains.     

Synthesis of ReI tricarbonyl complexes with various sulfur‐ and oxygen‐donating ligands: crystal structures of two ReI dinuclear structures bridged by S atoms

The synthesis and characterization of two dinuclear complexes, namely fac‐hexacarbonyl‐1κ³C,2κ³C‐(pyridine‐1κN)[μ‐2,2′‐sulfanediyldi(ethanethiolato)‐1κ²S¹,S³:2κ³S¹,S²,S³]dirhenium(I), [Re₂(C₄H₈S₃)(C₅H₅N)(CO)₆], ( 1 ), and tetraethylammonium fac‐tris(μ‐2‐methoxybenzenethiolato‐κ²S:S)bis[tricarbonylrhenium(I)], (C₈H₂₀N)[Re₂(C₇H₇OS)₃(CO)₆], ( 2 ), together with two mononuclear complexes, namely (2,2′‐bithiophene‐5‐carboxylic acid‐κ²S,S′)bromidotricarbonylrhenium(I), ( 3 ), and bromidotricarbonyl(methyl benzo[b]thiophene‐2‐carboxylate‐κ²O,S)rhenium(I), ( 4 ), are reported. Crystals of ( 1 ) and ( 2 ) were characterized by X‐ray diffraction. The crystal structure of ( 1 ) revealed two Re—S—Re bridges. The thioether S atom only bonds to one of the Re^I metal centres, while the geometry of the second Re^I metal centre is completed by a pyridine ligand. The structure of ( 2 ) is characterized by three S‐atom bridges and an Re…Re nonbonding distance of 3.4879 (5) Å, which is shorter than the distance found for ( 1 ) [3.7996 (6)/3.7963 (6) Å], but still clearly a nonbonding distance. Complex ( 1 ) is stabilized by six intermolecular hydrogen‐bond interactions and an O…O interaction, while ( 2 ) is stabilized by two intermolecular hydrogen‐bond interactions and two O…π interactions.     

The one‐dimensional structure of Cu(dmen)2Pd(CN)4 (dmen is N,N‐di­methyl­ethyl­enedi­amine)

The title compound, catena‐poly­[[μ‐cyano‐1:2κ²C:N‐dicyano‐1κ²C‐bis(N,N‐di­methyl­ethyl­enedi­amine‐2κ²N,N′)­pallad­ium(II)­copper(II)]‐μ‐cyano‐1:2′κ²C:N], [CuPd(CN)₄(C₄H₁₂N₂)₂]_n, consists of infinite quasi‐linear chains with all metal positions on centers of symmetry. The paramagnetic [Cu(dmen)₂]²⁺ cations are linked by diamagnetic [Pd(CN)₄]²⁻ anions via bridging cyano groups, which occupy trans positions in both cation and anion, giving rise to 2,2‐TT‐type chains. The coordination polyhedron of the paramagnetic Cu atom is an octahedron exhibiting typical elongation due to the Jahn–Teller effect, with two longer Cu—N([triple‐bond]C) bonds in the axial positions [2.5528 (13) Å] and four shorter Cu—N_dmen bonds (dmen is N,N‐dimethylethylenediamine) in the equatorial plane [1.9926 (11) and 2.1149 (12) Å]. The Cu—N[triple‐bond]C angle is 138.03 (12)°. Neighboring chains form weak N—H⋯NC hydrogen bonds.     

The first example of a two‐coordinated AuI atom bonded to an FeII atom and an N‐heterocyclic carbene (NHC) ligand

The aurophilicity exhibited by Au^I complexes depends strongly on the nature of the supporting ligands present and the length of the Au–element (Au—E) bond may be used as a measure of the donor–acceptor properties of the coordinated ligands. A binuclear iron–gold complex, [1,3‐bis(2,6‐diisopropylphenyl)imidazol‐2‐ylidene‐2κC²]dicarbonyl‐1κ²C‐(1η⁵‐cyclopentadienyl)gold(I)iron(II)(Au—Fe) benzene trisolvate, [AuFe(C₅H₅)(C₂₇H₃₆N₂)(CO)₂]·3C₆H₆, was prepared by reaction of K[CpFe(CO)₂] (Cp is cyclopentadienyl) with (NHC)AuCl [NHC = 1,3‐bis(2,6‐diisopropylphenyl)imidazol‐2‐ylidene]. In addition to the binuclear complex, the asymmetric unit contains three benzene solvent molecules. This is the first example of a two‐coordinated Au atom bonded to an Fe and a C atom of an N‐heterocyclic carbene.     

trans‐Bis­(diethano­lamine)­bis­(iso­thio­cyanato)­nickel(II)

In the neutral title complex, trans‐bis(2,2′‐imino­di­ethanol‐N,O)­bis­(iso­thio­cyanato)­nickel(II), [Ni(NCS)₂(C₄H₁₁NO₂)₂], the iso­thio­cyanate ions and the di­ethanol­amine mol­ecules act as mono­dentate and bi­dentate ligands, respectively. The Ni^II ion exhibits a distorted octahedral configuration with crystallographically imposed inversion symmetry and N_NCS—Ni—N_amine and N_NCS—Ni—O_amine bond angles of 88.78 (10) and 89.44 (10)°, respectively. The Ni—N bond distances are in the range 2.069 (3)–2.096 (2) Å. The mol­ecules are linked by hydrogen bonds to form a three‐dimensional infinite lattice.     

2,2′‐[2,3‐Di­hydro‐2‐(prop‐2‐enyl)‐1H‐isoindole‐1,3‐diyl­idene]bis(propane­di­nitrile)–tetra­thia­fulvalene (1/1), TCPI–TTF

The title complex, C₁₇H₉N₅·C₆H₄S₄, contains π‐deficient bis(di­nitrile) and TTF mol­ecules stacked alternately in columns along the a‐axis direction; the interplanar angle between the TTF molecule and the isoindolinyl C₄N[C(CN)₂]₂ moiety is 1.21 (4)°. The N‐allyl moiety in the TCPI mol­ecule is oriented at an angle of 87.10 (10)° with respect to the five‐membered C₄N ring, and the four C[triple‐bond]N bond lengths range from 1.134 (3) to 1.142 (3) Å, with C—C[triple‐bond]N angles in the range 174.3 (3)–176.9 (2)°. In the TTF system, the S—C bond lengths are 1.726 (3)–1.740 (3) and 1.751 (2)–1.763 (2) Å for the external S—C(H) and internal S—C(S) bonds, respectively.     

Synthesis and crystal structure of a silver(I) 6-methylmercaptopurine riboside complex

Silver nitrate reacts with 6-methylmercaptopurine riboside (6-MMPR) in aqueous solution containing methanol and dimethyl sulfoxide at room temperature to give a colourless crystalline complex, namely, bis(6-methylmercaptopurine riboside-κN⁷)(nitrato-κ²O,O′)silver(I) 2.32-hydrate, [Ag(NO₃)(C₁₁H₁₄N₄O₄S)₂]·2.32H₂O. The crystal structure, determined from synchrotron diffraction data, shows a central Ag^I ion on a crystallographic twofold rotation axis, coordinated in an almost linear fashion by two 6-MMPR ligands via atom N7 (purine numbering), with the nitrate counter-ion loosely coordinated as a bidentate ligand, forming a discrete molecular complex as an approximate dihydrate. The complex and water molecules are connected in a three-dimensional network by hydrogen bonding.     

Conformational isomers of the [(5‐methyl‐2‐pyridinio)aminomethylene]diphosphonate dianion and [(5‐methyl‐2‐pyridyl)aminomethylene]diphosphonate trianion in salts with 4‐aminopyridine and ammonia

The crystal structures of two salts, products of the reactions between [(5‐methyl‐2‐pyridyl)aminomethylene]bis(phosphonic acid) and 4‐aminopyridine or ammonia, namely bis(4‐aminopyridinium) hydrogen [(5‐methyl‐2‐pyridinio)aminomethylene]diphosphonate 2.4‐hydrate, 2C₅H₇N₂⁺·C₇H₁₀N₂O₆P₂²⁻·2.4H₂O, (I), and triammonium hydrogen [(5‐methyl‐2‐pyridyl)aminomethylene]diphosphonate monohydrate, 3NH₄⁺·C₇H₉N₂O₆P₂³⁻·H₂O, (II), have been determined. In (I), the Z configuration of the ring N—C and amino N—H bonds of the bisphosphonate dianion with respect to the C_ring—N_amino bond is consistent with that of the parent zwitterion. Removing the H atom from the pyridyl N atom results in the opposite E configuration of the bisphosphonate trianion in (II). Compound (I) exhibits a three‐dimensional hydrogen‐bonded network, in which 4‐aminopyridinium cations and water molecules are joined to ribbons composed of anionic dimers linked by O—H...O and N—H...O hydrogen bonds. The supramolecular motif resulting from a combination of these three interactions is a common phenomenon in crystals of all of the Z‐isomeric zwitterions of 4‐ and 5‐substituted (2‐pyridylaminomethylene)bis(phosphonic acid)s studied to date. In (II), ammonium cations and water molecules are linked to chains of trianions, resulting in the formation of double layers.     

Ni(bipy)2Ni(CN)4, a new type of one‐dimensional square tetra­cyano complex

The one‐dimensional structure of catena‐poly­[[bis(2,2′‐bi­pyri­dyl‐1κ²N,N′)‐μ‐cyano‐1:2κ²N:C‐di­cyano‐2κ²C‐di­nickel(II)]‐μ‐cyano‐C:N], [Ni₂(CN)₄(C₁₀H₈N₂)₂]_n, consists of infinite zigzag chains running parallel to the c axis. The chains are composed of paramagnetic [Ni(bipy)₂]²⁺ cations (bricks; nickel on a twofold axis) linked by diamagnetic [Ni(CN)₄]^2? anions (mortar; nickel on an inversion center) via bridging cyano groups. The bridging cyano groups occupy cis positions in the cation and trans positions in the anion, giving rise to a new previously unknown CT‐type chain (i.e. cis–trans‐type) among square tetra­cyano complexes. The coordination polyhedron of the paramagnetic Ni atom (twofold symmetry) is a slightly deformed octahedron with the two Ni—N(bipy) bonds in cis positions being somewhat longer [2.112 (3) Å] than the remaining four Ni—N bonds with a mean value of 2.065 (6) Å. The bond distances and angles in the anion have typical values.     

A novel Na–O–Ni–O–Ni bridging complex of Cl‐HXTA,where Cl‐HXTA is 2,6‐bis{[bis­(carboxyl­ato­methyl)­amino]­methyl}‐4‐chloro­phenolate

In the structure of the title compound, hepta­aqua‐1κ³O,2κ²O,3κ²O‐(μ₃‐2,6‐bis{[bis­(carboxyl­ato­methyl)­amino]methyl}‐4‐chloro­phenolato‐1κO;2κ⁴O,O′,N,O¹;3κ⁴O¹N′,O′′,O′′′)dinickel(II)­sodium(I) pentahydrate, [NaNi₂(C₁₆H₁₄ClN₂O₉)(H₂O)₇]·5H₂O or [Ni₂(Cl‐HXTA)(H₂O)₄{Na(H₂O)₃}]·5H₂O, the trinuclear complex unit consists of two distorted NiNO₅ octahedra bridged by a phenolate O atom and an NaO₄ tetrahedron bridged to one of the Ni octahedra by a carboxylate O atom. There are four intramolecular hydrogen bonds forming four six‐membered rings in the complex and the complex mol­ecules are connected to each other by a very complicated hydrogen‐bond network.     

Supramolecular architectures in metal(II) (Cd/Zn) halide/nitrate complexes of cytosine/5‐fluorocytosine

Three new metal(II)–cytosine (Cy)/5‐fluorocytosine (5FC) complexes, namely bis(4‐amino‐1,2‐dihydropyrimidin‐2‐one‐κN³)diiodidocadmium(II) or bis(cytosine)diiodidocadmium(II), [CdI₂(C₄H₅N₃O)₂], ( I ), bis(4‐amino‐1,2‐dihydropyrimidin‐2‐one‐κN³)bis(nitrato‐κ²O,O′)cadmium(II) or bis(cytosine)bis(nitrato)cadmium(II), [Cd(NO₃)₂(C₄H₅N₃O)₂], ( II ), and (6‐amino‐5‐fluoro‐1,2‐dihydropyrimidin‐2‐one‐κN³)aquadibromidozinc(II)–6‐amino‐5‐fluoro‐1,2‐dihydropyrimidin‐2‐one (1/1) or (6‐amino‐5‐fluorocytosine)aquadibromidozinc(II)–4‐amino‐5‐fluorocytosine (1/1), [ZnBr₂(C₄H₅FN₃O)(H₂O)]·C₄H₅FN₃O, ( III ), have been synthesized and characterized by single‐crystal X‐ray diffraction. In complex ( I ), the Cd^II ion is coordinated to two iodide ions and the endocyclic N atoms of the two cytosine molecules, leading to a distorted tetrahedral geometry. The structure is isotypic with [CdBr₂(C₄H₅N₃O)₂] [Muthiah et al. (2001). Acta Cryst. E 57 , m558–m560]. In compound ( II ), each of the two cytosine molecules coordinates to the Cd^II ion in a bidentate chelating mode via the endocyclic N atom and the O atom. Each of the two nitrate ions also coordinates in a bidentate chelating mode, forming a bicapped distorted octahedral geometry around cadmium. The typical interligand N—H…O hydrogen bond involving two cytosine molecules is also present. In compound ( III ), one zinc‐coordinated 5FC ligand is cocrystallized with another uncoordinated 5FC molecule. The Zn^II atom coordinates to the N(1) atom (systematic numbering) of 5FC, displacing the proton to the N(3) position. This N(3)—H tautomer of 5FC mimics N(3)‐protonated cytosine in forming a base pair (via three hydrogen bonds) with 5FC in the lattice, generating two fused R₂²(8) motifs. The distorted tetrahedral geometry around zinc is completed by two bromide ions and a water molecule. The coordinated and nonccordinated 5FCs are stacked over one another along the a‐axis direction, forming the rungs of a ladder motif, whereas Zn—Br bonds and N—H…Br hydrogen bonds form the rails of the ladder. The coordinated water molecules bridge the two types of 5FC molecules via O—H…O hydrogen bonds. The cytosine molecules are coordinated directly to the metal ion in each of the complexes and are hydrogen bonded to the bromide, iodide or nitrate ions. In compound ( III ), the uncoordinated 5FC molecule pairs with the coordinated 5FC ligand through three hydrogen bonds. The crystal structures are further stabilized by N—H…O, N—H…N, O—H…O, N—H…I and N—H…Br hydrogen bonds, and stacking interactions.