Scanning tunneling microscopy study of the structure and orbital-mediated tunneling spectra of cobalt(II) phthalocyanine and cobalt(II) tetraphenylporphyrin on au(111): mixed composition films

Binary thin films of cobalt(II) phthalocyanine (CoPc) and cobalt(II) tetraphenylporphyrin (CoTPP) were prepared at submonolayer coverage on Au(111)/mica substrates byvapor deposition. All sample preparation and analysis were done under an ultrahigh vacuum. Scanning tunneling microscopy (STM) constant-current images of CoPc/CoTPP mixtures showed two close-packed surface structures, with different compositional percentages and some disorder. CoPc was also observed exclusively in one-dimensional chains and as single, isolated molecules below 220 K. Occupied and unoccupied orbital energy levels were identified by STM and tunnel-diode-based orbital-mediated tunneling spectroscopy. Occupied energy levels were also confirmed by ultraviolet photoelectron spectroscopy. The transient oxidation of the Co d(z2) orbital is identified in STM dI/dV(V) curves just negative of the 0 V sample bias for both molecules. Nearly identical constant-current contours are observed over the central Co2+ ions of CoTPP and CoPc, indicating that the attenuation of the d(z)2 orbital-mediated tunneling current induced by the structure of TPP relative to Pc is at most a factor of about 10. The orbital-mediated tunneling spectra of CoTPP and CoPc are distinctly different and allow these structurally similar species to be differentially identified.     

In situ scanning tunneling microscopy of molecular assemblies of cobalt(II)- and copper(II)-coordinated tetraphenyl porphine and phthalocyanine on Au(100)

Molecules of copper(II) and cobalt(II) 5,10,15,20-tetraphenyl-21H,23H-porphine (CuTPP and CoTPP) and cobalt(II) phthalocyanine (CoPc) are spontaneously adsorbed onto reconstructed Au(100) substrate from a benzene solution containing each individual complex. In situ scanning tunneling microscopy (STM) was used to examine the real-space arrangement and the internal molecular structure of each of the individual molecules in 0.1 M HClO4 under potential control. The adsorption of CuTPP and CoTPP produced the same highly ordered square array with an intermolecular spacing of 1.44 nm on a reconstructed Au(100) surface. These molecular superlattices and the underlying reconstructed Au(100) predominated between 0 and 0.9 V, but lifting of the reconstructed Au(100) surface and elimination of the ordered adlayers occurred at more positive potentials. Molecular resolution STM revealed propeller-shaped admolecule with its center imaged as a protrusion for Co(II) and a depression for Cu(II). In contrast, the spontaneous adsorption of CoPc molecules resulted in a rapid phase transition from the reconstructed Au(100) surface to the (1 x 1) phase, coupled with the production of locally ordered, square-shaped arrays with an intermolecular distance of 1.65 nm. This molecular adlayer and the Au(100)-(1 x 1) remained unchanged when the potential was modulated between 0 and 1.0 V. These results indicate that the subtle variation in the molecular structure of adsorbate influenced not only its spatial arrangement but also the structure of the underlying Au(100) substrate.     

Scanning tunneling microscopy, orbital-mediated tunneling spectroscopy, and ultraviolet photoelectron spectroscopy of metal(II) tetraphenylporphyrins deposited from vapor.

Thin films of vapor-deposited Ni(II) and Co(II) complexes of tetraphenylporphyrin (NiTPP and CoTPP) were studied supported on gold and embedded in Al-Al(2)O(3)-MTPP-Pb tunnel diodes, where M = Ni or Co. Thin films deposited onto polycrystalline gold were analyzed by ultraviolet photoelectron spectroscopy (UPS) using He I radiation. Scanning tunneling microscopy (STM) and orbital-mediated tunneling spectroscopy (STM-OMTS) were performed on submonolayer films of CoTPP and NiTPP supported on Au(111). Inelastic electron tunneling spectroscopy (IETS) and OMTS were measured in conventional tunnel diode structures. The highest occupied pi molecular orbital of the porphyrin ring was seen in both STM-OMTS and UPS at about 6.4 eV below the vacuum level. The lowest unoccupied pi molecular orbital of the porphyrin ring was observed by STM-OMTS and by IETS-OMTS to be located near 3.4 eV below the vacuum level. The OMTS spectra of CoTPP had a band near 5.2 eV (below the vacuum level) that was attributed to transient oxidation of the central Co(II) ion. That is, it is due to electron OMT via the half-filled d(z)(2) orbital present in Co(II) of CoTPP. The NiTPP OMTS spectra show no such band, consistent with the known difficulty of oxidation of the Ni(II) ion. The STM-based OMTS allowed these two porphyrin complexes to be easily distinguished. The present work is the first report of the observation of STM-OMTS, tunnel junction OMTS, and UPS of the same compounds. Scanning tunneling microscope-based orbital-mediated tunneling provides more information than UPS or tunnel junction-based OMTS and does so with molecular-scale resolution.     

Topography Structure and Scanning Tunneling Spectrum of Nickel（Ⅱ）-tetraphenylporphyrin Molecules on Au（111）

1 INTRODUCTION Metalloporphyrins are intensively studied for many reasons. They have been comprehensively used in biochemistry, analytical chemistry and so on. They play an important role in biological processes such as oxygen transport photosynthesis and enzyme catalysis. They can act as catalysts[1], and can undergo reversible redox reactions in which the site of electron transfer may be localized on the por- phyrin ring or on the central metal ion. Both reaction types are important in…     

Topography Structure and Scanning Tunneling Spectrum of Nickel(Ⅱ)-tetraphenylporphyrin Molecules on Au(111)

Scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS) were performed on monolayer film of NiTPP supported on Au(111) under ultrahigh vacuum (UHV) conditions. The constant current STM images show remarkable bias dependence. High resolution STM data clearly show the individual NiTPP molecules and allow easy differentiation between NiTPP and CoTPP reported before. Scanning tunneling spectra, as a function of molecule-tip separation, were acquired over a range of tip motion of 0.42 nm. Spectra do not show the variation in band splitting with tip distance. It appears for molecules such as NiTPP that the average potential at the molecule is essentially the same at the same metal substrate. For molecules of the height of NiTPP, the scanning tunneling spectra should give reliable occupied and unoccupied orbital energies over a wide range of tip-molecule distances.     

Initial growth of lutetium(III) bis-phthalocyanine on Ag(111) surface

The adsorption of lutetium(III) bis-phthalocyanine (LuPc(2)) on Ag(111) was investigated using scanning tunneling microscopy and spectroscopy (STM/STS). A comprehensive study was carried out toward understanding the driving mechanism responsible for the formation of the first and second monolayers (MLs). In both MLs, the adsorbed molecules are found to exhibit different in-plane orientations arranged according to a "chess-board" like pattern. Highly resolved STM images allowed an exact determination of the corresponding angle mismatch, which differs for the first and second MLs. The tunneling transport through individual molecules reveals a negative differential resistance (NDR) effect detectable within the current-voltage curves. The corresponding density of states (DOS) representation is consistent with a resonant tunneling mechanism sustained by the valence band (VB) states close to the Fermi energy (E(F)) recorded via highly resolved ultraviolet photoemission spectroscopy (UPS).     

Adsorptive behavior of dimethylglyoxime on Au(111)

Dimethylglyoxime (DMG) adsorbed on Au(111) was investigated using electrochemical scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). STM experiments revealed three different structures of adsorbed DMG at open circuit potential (~0.07 V versus Ag/AgCl): (2√3×2√3)R30°-α, (2√3×4√3)R30°-β, and (2√3×4√3)R30°-γ. The coverage of adsorbed DMG obtained using XPS was 0.33. A combination of structural and quantitative information identified the adsorbed DMG as an anionic tetramer, held together by intermolecular hydrogen bonding and arrayed in three ordered patterns. Domains of adsorbed DMG underwent phase transitions between the observed structures, most likely due to the influence of the STM tip. However, a significant correlation between the observed structures and the imaging conditions was not found. The ordered layers existed only at open circuit potential as evidenced by their disappearance when the potential was shifted to 0.2 or -0.15 V. The ordered layers were also removed by immersion in a solution of Ni(2+), implying that the adsorbed DMG was converted to a soluble dimer complex with the Ni(2+) ion. This particular observation is discussed in terms of the rigidity of the organic network.     

The puzzle of contrast inversion in DNA STM imaging

DNA has been at the center of an imaging effort since the invention of the scanning tunneling microscope (STM). In some of the STM imaging reports the molecules appeared with negative contrast, i.e., "submerged" under the metal background and darker. We demonstrate the phenomenon of contrast inversion in DNA STM imaging by controlled and spontaneous contrast inversions and by the dependence of the DNA apparent height with respect to the surface on the imaging bias voltage. Using these characterizations, we formulate a model explaining the above phenomenon by resonant tunneling through virtual states in the vacuum between the STM tip and the DNA molecule.     

Bias-dependent visualization of electron donor (D) and electron acceptor (A) moieties in a chiral DAD triad molecule

The 2D crystal lattice structure and bias-dependent contrast of a chiral electron donor-acceptor-donor triad system, composed of two oligo(p-phenylene vinylene) electron donors and a perylenediimide electron acceptor (OPV4-PDI-OPV4), have been studied by means of scanning tunneling microscopy (STM) at the liquid-graphite interface. OPV4-PDI-OPV4 is ordered in rows and forms a well-ordered 2D crystal lattice structure. The electrical properties of the donor and acceptor parts are distinguished by the contrast in bias-dependent STM imaging.     

Conformation Controls Mobility: 2H-Tetranaphthylporphyrins on Cu(111)

The adsorption behavior and the mobility of 2H-Tetranaphthylporphyrin (2HTNP) on Cu(111) was investigated by scanning tunneling microscopy (STM) at room temperature (RT). The molecules adsorb, like the structurally related 2HTPP, in the “inverted” structure with the naphthyl plane restricted to an orientation parallel to the Cu surface. The orientation of the four naphthyl groups yields altogether 16 possible conformations. Due to the existence of rotamer pairs, 10 different appearances are expected on the surface, and all of them are identified by STM at RT. Most interestingly, the orientation of the naphthyl groups significantly influences the diffusion behavior of the molecules on Cu(111). We identify three different groups of conformers, which are either immobile, medium or fast diffusing at RT. The mobility seems to decrease with increasing size of the footprint of the conformers on the surface.     

Scanning tunneling microscopy and spectroscopy studies of 4-methyl- 4'-(n-mercaptoalkyl)biphenyls on Au(111)-(1x1).

4-methyl-4'-(n-mercaptoalkyl)biphenyl (CH3-C6H4-C6H4-(CH2)n-SH, n=3-6, BPn) monolayers assembled on Au(111)-(1x1) in 1,3,5,-trimethylbenzene (TMB) at various temperatures are studied by scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS). High resolution STM images reveal that BP3 and BP5 form a (sqrt 3x2sqrt 3) repeating motif superimposed on a temperature-dependent Moire pattern. BP4 and BP6 adlayers are characterized by a coexisting (2sqrt 3x5sqrt 3) majority phase and a temperature-dependent (3xpsqrt 3) minority phase. Assembly at 60 degrees C or 90 degrees C leads to p=5. Compression of the adlayer was found at higher temperatures. Combined with high-resolution structure experiments, the electronic characteristics of BP3 and BP4 self-assembled monolayers (SAMs) were studied by monitoring current-distance (iT-Deltaz) and current-voltage (iT-Ebias) characteristics in TMB employing a gold STM tip|BPn|Au(111)-(1x1) configuration. The semilogarithmic (iT-Deltaz) plots yielded three linear regions in the range 10 pA相似文献   

An in situ STM and DTS study of the extremely pure [EMIM]FAP/Au(111) interface

Herein the structure of the interfacial layer between the air- and water-stable ionic liquid 1-ethyl-3-methylimidazolium tris(pentafluoroethyl)trifluorophosphate ([EMIM]FAP) and Au(111) is investigated using in situ scanning tunneling microscopy (STM), distance tunneling spectroscopy (DTS) and cyclic voltammetry (CV) measurements. The in situ STM measurements reveal that structured interfacial layers can be probed in both cathodic and anodic regimes at the IL/Au(111) interface. The structure of these layers is dependent on the applied electrode potential, the number of subsequent STM scans and the scan rate. Furthermore, first DTS results show that the tunneling barrier during the 1st STM scan does not seem to change significantly in the cathodic potential regime between the ocp (-0.2 V) and -2.0 V.     

In situ STM imaging of bis-3-sodiumsulfopropyl-disulfide molecules adsorbed on copper film electrodeposited on Pt(111) single crystal electrode

The adsorption of bis-3-sodiumsulfopropyldi-sulfide (SPS) on metal electrodes in chloride-containing media has been intensively studied to unveil its accelerating effect on Cu electrodeposition. Molecular resolution scanning tunneling microscopy (STM) imaging technique was used in this study to explore the adsorption and decomposition of SPS molecules concurring with the electrodeposition of copper on an ordered Pt(111) electrode in 0.1 M HClO(4) + 1 mM Cu(ClO(4))(2) + 1 mM KCl. Depending on the potential of Pt(111), SPS molecules could react, adsorb, and decompose at chloride-capped Cu films. A submonolayer of Cu adatoms classified as the underpotential deposition (UPD) layer at 0.4 V (vs Ag/AgCl) was completely displaced by SPS molecules, possibly occurring via RSSR (SPS) + Cl-Cu-Pt → RS(-)-Pt(+) + RS(-) (MPS) + Cu(2+) + Cl(-), where MPS is 3-mercaptopropanesulfonate. By contrast, at 0.2 V, where a full monolayer of Cu was presumed to be deposited, SPS molecules were adsorbed in local (4 × 4) structures at the lower ends of step ledges. Bulk Cu deposition driven by a small overpotential (η < 50 mV) proceeded slowly to yield an atomically smooth Cu deposit at the very beginning (<5 layers). On a bilayer Cu deposit, the chloride adlayer was still adsorbed to afford SPS admolecules arranged in a unique 1D striped phase. SPS molecules could decompose into MPS upon further Cu deposition, as a (2 × 2)-MPS structure was observed with prolonged in situ STM imaging. It was possible to visualize either SPS admolecules in the upper plane or chloride adlayer sitting underneath upon switching the imaging conditions. Overall, this study established a MPS molecular film adsorbed to the chloride adlayer sitting atop the Cu deposit.     

Electrolyte gating in redox-active tunneling junctions--an electrochemical STM approach

We report on the construction of an asymmetric tunneling junction between a Au STM tip and a Au(111)-(1 x 1) substrate electrode modified with the redox-active molecule N-hexyl-N'-(6-thiohexyl)-4,4'-bipyridinium bromide (HS6V6) in an electrochemical environment. The experiments focused on the reversible one-electron transfer reaction between the viologen dication V(2+) and the radical cation V(+*). Employing the concept of "electrolyte gating" we demonstrate transistor- and diodelike behavior based on in situ scanning tunneling spectroscopy at constant or variable bias voltages. We derived criteria and verified that the experimental data could be represented quantitatively by a model assuming a two-step electron transfer with partial vibrational relaxation. The analysis illustrates that the magnitude of the tunneling enhancement depends on the initial redox state of HS6V6 (V(2+) or V(+*)). Characteristic parameters, such as reorganization energy, potential drop, and overpotential across the tunneling gap were estimated and discussed. We present a clear discrimination between the redox-mediated enhanced and the off-resonance tunneling currents I(enh) respective I(T) and distinguish between electron transfer in symmetric and asymmetric Au | redox-molecule | Au configurations.     

Significance of local density of states in the scanning tunneling microscopy imaging of alkanethiol self-assembled monolayers

A systematic scanning tunneling microscopy (STM) study of alkanethiol self-assembled monolayers (SAMs) is presented as a function of the bias voltage, tunneling current, and tip-termini separation. Stable and etch-pit free SAMs of close-packed undecanethiol/Au(111) were obtained after annealing in ultrahigh vacuum. STM revealed two distinct c(4x2) structures with four nonequivalent molecules per unit cell. For both structures, reversible contrast variations occur upon systematically tuning the bias voltage, the current, and the tip-termini distance. These contrast transitions originate from probing the corresponding local density of states (LDOS) of each molecule and not from the reorientation of the alkanethiol chains. The STM contrast is particularly sensitive to the tip-termini separation in the range of 0.5-2.5 A, reflecting the distance-dependence of LDOS. At a fixed tip elevation, the STM contrast is less sensitive to changes in bias within 0.1-1.2 V. For the first time, we demonstrate that LDOS may override the physical height variations in the STM topographic contrast for alkanethiol SAM systems.     

Noncontact to contact tunneling microscopy in self-assembled monolayers of alkylthiols on gold

The mechanical interaction between a scanning tunneling microscopy (STM) probe and hexadecane (C16) alkylthiol molecules in a self-assembled monolayer was investigated by sensing the force during constant current mode STM imaging. The force regime changed from attractive to repulsive over the insulating molecule islands under feedback control of the current. The repulsive force on the molecule was strongly dependent on the setpoint value of the current during STM operation. In our experiments, the threshold for contact was found at a tunneling current of 1 pA when the sample bias is 2 V. At higher current, the apparent height of molecular islands changed logarithmically with current. In addition, the current as a function of applied load revealed a stepwise increase, indicative of discrete molecular tilting events. A tunneling decay constant beta of =0.53+/-0.02 A(-1) was obtained based on the measurement of the height of molecules and the tunneling current.     

High-resolution STM imaging of novel poly(G)-poly(C) DNA molecules

High-resolution scanning tunneling microscopy (STM) imaging of single double-stranded poly(G)-poly(C) DNA molecules, made by a novel synthesis method, shows the molecules morphology. The STM images reveal a periodic structure of approximately 4 nm, seen as repeating "bulbs" along the molecules. These "bulbs" are associated with the molecule helix (the major grooves). "Nicks", two per 100 nm on the average, are observed along the DNA as well. The STM measurements were supported by a morphological statistics of the DNA molecule groove length and apparent height relative to the surface.     

Coexistence of multiple conformations in cysteamine monolayers on Au(111)

The structural organization, catalytic function, and electronic properties of cysteamine monolayers on Au(111) have been addressed comprehensively by voltammetry, in situ scanning tunneling microscopy (STM) in anaerobic environment, and a priori molecular dynamics (MD) simulation and STM image simulation. Two sets of voltammetric signals are observed. One peak at -(0.65-0.70) V (SCE) is caused by reductive desorption of cysteamine. The other signal, at -(0.25-0.40) V consists of a peak doublet. The pH dependence of the latter suggests that the origin is catalytic dihydrogen evolution. The doublet feature is indicative of two distinct cysteamine configurations. Cysteamine monolayer formation from initial nucleation to a highly ordered phase has been successfully observed in real time using oxygen-free in situ STM. Random cellular patterns, disordered adlayer formation accompanied by high step edge mobility, and ultimately a highly ordered (square root 3 x 4) R30 degrees lattice are observed sequentially. Pits are formed due to enclosure of the mobile edges during the adsorption process. In the highly ordered cysteamine layer, each unit has two spots with apparent 0.6 A height difference in STM images. The coverage 5.7 +/- 0.1 x 10(-10) mol cm(-2) determined by voltammetry supports that the spots represent two individual cysteamine molecules. A priori MD and density functional simulations hold other clues to the image interpretation and indicate that the NH(3)(+) groups dominate the tunneling contrast. A wide range of interface structures, showing variations in the sulfur binding site and orientation, gauche and trans conformers, and especially hydrogen-bonding interactions, are examined, from which it is concluded that the adsorbate structure is controlled by interactions with the solvent rather than with the substrate.     

Au(111)表面Verdazyl自由基的构象转换

Pure organic radical molecules on metal surfaces are of great significance in exploration of the electron spin behavior. However, only a few of them are investigated in surface studies due to their poor thermal stability. The adsorption and conformational switching of two verdazyl radical molecules, namely, 1, 5-biisopropyl-3-(benzo[b]benzo[4,5]thieno[2, 3-d]thiophen-2-yl)-6-oxoverdazyl (B2P) and 1, 5-biisopropyl-3-(benzo[b]benzo[4,5]thieno[2, 3-d]thiophen-4-yl)-6-oxoverdazyl (B4P), are studied by scanning tunneling microscopy (STM) and density functional theory (DFT). The adsorbed B2P molecules on Au(111) form dimers, trimers and tetramers without any ordered assembly structure in which two distinct appearances of B2P in STM images are observed and assigned to be its "P" and "T" conformations. The "P" conformation molecules appear in the STM image with a large elliptical protrusion and two small ones of equal size, while the "T" ones appear with a large protrusion and two small ones of different size. Likewise, the B4P molecules on Au(111) form dimers at low coverage, strip structure at medium coverage and assembled structure at high coverage which also consists of above-mentioned two conformations. Both B2P molecules and B4P molecules are held together by weak intermolecular interaction rather than chemical bond. STM tip induced conformational switching of both verdayzl radicals is observed at the bias voltage of +2.0 V. The "T" conformation of B2P can be switched to the "P" while the "P" conformation of B4P can be switched to the "T" one. For both molecules, such a conformational switching is irreversible. The DFT calculations with Perdew-Burke-Ernzerhof version exchange-correlation functional are used to optimize the model structure and simulate the STM images. STM images of several possible molecular conformations with different isopropyl orientation and different tilt angle between verdazyl radical and Au(111) surface are simulated. For conformations with different isopropyl orientation, the STM simulated images are similar, while different tilt angles of verdazyl radical lead to significantly different STM simulated images. Combined STM experiments and DFT simulations reveal that the conformational switching originates from the change of tilting angle between the verdazyl radical and Au(111) surface. The tilt angles in "P" and "T" conformations are 0° and 50°, respectively. In this study, two different adsorption conformations of verdazyl radicals on the Au(111) surface are presented and their exact adsorption structures are identified. This study provides a possible way to study the relationship between the electron spin and configuration conversion of pure organic radical molecules and a reference for designing more conformational switchable radical molecules that can be employed as interesting molecular switches.     

STM/STS observation of polyoxoanions on HOPG surfaces: the wheel-shaped [Cu20Cl(OH)24(H2O)12(P8W48O184)]25- and the ball-shaped [{Sn(CH3)2(H2O)}24{Sn(CH3)2}12(A-PW9O34)12]36-

A combination of scanning tunneling microscopy (STM) and scanning tunneling spectroscopy (STS) techniques have been performed on the wheel-shaped [Cu20Cl(OH)24(H2O)12(P8W48O184)]25- and the ball-shaped [{Sn(CH3)2(H2O)}24{Sn(CH3)2}12(A-PW9O34)12]36- deposited on highly oriented pyrolytic graphite surfaces. Small, regular molecule clusters, as well as separated single molecules, were observed. The size of the molecules is in agreement with the data determined by X-ray crystallography. In STS measurements, we found a rather large contrast at the expected location of the Cu metal centers in our molecules, i.e., the location of the individual Cu ions in their organic matrix is directly addressable by STS.