IR spectra of water clusters with captured ethane molecules: Computer simulation

Uptake of ethane molecules by a monodisperse aqueous system was simulated by molecular dynamics. The cluster (H₂O)₂₀ characterizing the system remains stable until the number of the captured C₂H₆ molecules becomes larger than four. Addition of ethane molecules to the disperse aqueous system decreases both the real and imaginary parts of the dielectric permittivity in the frequency range 0 ≤ ω ≤ 1000 cm^?1. The integral IR absorption coefficient of the disperse system containing C₂H₆ molecules increases, and the frequency-average reflection coefficient decreases. The continuous reflection spectra transform into band spectra. The heat-radiating power of the clusters decreases upon absorption of ethane molecules. The cluster that took up two ethane molecules exhibits the highest radiating power. This cluster has the largest number of active electrons interacting with the arriving wave.     

Molecular Dynamics Simulation of Diffusion of Vitamin C in Water Solution

Under different temperatures and concentrations, the diffusion of Vitamin C (VC) in water solution was examined by molecular dynamics simulation. The diffusion coefficients were calculated based on the Einstein equation. The influences of temperature, concentration, and simulation time on the diffusion coefficient were discussed. The results showed that at higher temperature and lower concentration the normal diffusions appear relatively late, but the linear range of mean square displacement curves continues longer than that at lower temperature and higher concentration. At the same temperature, the normal diffusion time increases and the diffusion coefficient decreases as the simulation concentration increases. These simulation results are in good agreement with experiments. Analyses of the pair correlation functions of the simulation systems showed that hydrogen bonds are mainly formed between the hydrogen atoms of VC molecules and oxygen atoms of H₂O molecules, rather than between the O atoms of VC molecules and H atoms of H₂O molecules. The diffusion coefficient is higher as the interaction between water molecules and VC molecules is stronger when VC concentration is lower. The water in the model systems affects the diffusion of VC molecules by the short‐range repulsion of O(H₂O)‐O(H₂O) pairs and the non‐bond interaction of H(H₂O)‐H(H₂O) pairs. The short‐range repulsion of O(H₂O)‐O(H₂O) pairs is greater when VC concentration is higher, the diffusion of VC is weaker. The greater the non‐bond interaction of H(H₂O)‐H(H₂O) pairs is, the higher the VC diffusion is. It is expected that this study can provide a theoretical direction for the experiments on the mass transfer of VC in water solution.     

IR absorption and Raman spectra of silicon dioxide nanoparticles in the presence of water: Computer experiment

Interactions of (SiO₂)₅₀ clusters with 10, 20, 30, or 40 water molecules are studied by molecular dynamics method. Flat SiO₂ nanoparticle covered with a water layer is formed after the inclusion of water molecules into the cluster. As a rule, the integral intensity of IR and Raman spectra lowers after the absorption of H₂O molecules by the cluster. The power of IR radiation emitted by the cluster increases nonmonotonically with the addition of water molecules to the cluster. The absorption of water molecules by the cluster leads to a significant increase in the absorption coefficient and only a slight increase in the refractive index. The number of electrons participating in the interaction with electromagnetic radiation increases with the addition of water molecules to the cluster.     

Computer study of the absorption of ethane by aqueous ultradispersed medium: IR spectra

Absorption of ethane molecules by water clusters containing 10–20 molecules is studied by the molecular dynamics method. The (H₂O) _n (I), C₂H₆(H₂O) _n (II), and (C₂H₆)₂(H₂O) _n (III) cluster systems are composed on the basis of specific statistical weights. Spectral characteristics of system and single clusters are determined in the frequency range of 0 ≤ ω ≤ 1000 cm^?1. In this frequency range, both real and imaginary parts of dielectric permittivity decrease monotonically after the absorption of C₂H₆ molecules by an aqueous ultradispersed system. Integral coefficient of IR absorption increases, while average (over frequency) reflection coefficient decreases after the absorption of ethane molecules. The intensity of IR scattering by the systems of clusters containing C₂H₆ molecules lowers. Maximal values of radiation power for water clusters with various sizes are balanced with the capture of ethane molecules by the clusters, whereas oscillations in the size dependence of the density of electrons that are active with respect to IR radiation decrease.     

Synthesis and crystal structure characterization of complex [Cd(Bipy)<Subscript>2</Subscript>(L)] · 10H<Subscript>2</Subscript>O (H<Subscript>2</Subscript>L = 2,6-pyridinedicarboxylic acid)

A novel complex [Cd(Bipy)₂(L)] · 10H₂O (I) (H₂L = 2,6-pyridinedicarboxylic acid), has been synthesized by the reaction of bipyridyl and H₂L with cadmium(II) salt. Elemental analysis, IR spectra, and X-ray single-crystal diffraction were carried out to determine the composition and crystal structure of complex I. The cadmium atom is seven-coordinated in a distorted pentagonal bipyramidal configuration. Ten water molecules formed a large water cluster with the oxygen atoms of the H₂L ligand. The complexes form a 2D supramolecular framework and a 3D reticulate structure by hydrogen bonding and π-π-stacking of the neighboring bipyridyl ligands coming from the neighboring complexes.     

单核Zn(Ⅱ)/Ni(Ⅱ)含氮配体配合物的合成、晶体结构及性质

合成了2个新的配合物[Zn(BPP)2(H2O)4](2,6-NDS)·0.5H2O(1)和[Ni(phen)2(H2O)2](A-2,5-DSA)·3H2O(2)(2,6-NDS=2,6-萘二磺酸根,A-2,5-DSA=苯氨-2,5-二磺酸根,BPP=1,3-二(4-吡啶基)丙烷,phen=1,10-邻菲咯啉),用X-射线单晶衍射结构分析方法测定了配合物的晶体结构。配合物1是单核分子,Zn2+离子与2个1,3-二(4-吡啶基)丙烷的2个N原子及4个水分子配位,形成单核配位阳离子。相邻配位阳离子通过配位水分子与氮原子的氢键作用联接成一维双螺旋阳离子链。双螺旋阳离子链与未配位的2,6-萘二磺酸根阴离子通过氢键作用形成二维超分子网。配合物2是单核分子,Ni2+离子与2个1,10-邻菲咯啉分子中的4个N原子及2个水分子配位,形成单核配位阳离子。配位阳离子与游离的水分子及苯氨-2,5-二磺酸根阴离子通过氢键作用构筑成二维超分子网。     

Tetraaquabis(pyridine)metal(II) saccharinate tetrahydrate, [M(H2O)4(py)2](sac)2·4H2O; M = Co,Ni. Crystal structure determination

The crystal structure determination of the title compounds showed that they are isomorphous, revealing the general formula [M(H₂O)₄(py)₂](sac)₂·4H₂O. Their structures are built up of [M(H₂O)₄(py)₂]²⁺ cations, saccharinato anions and non-coordinated water molecules. The metal atom lies on the inversion center and is octahedrally coordinated by four water oxygens and two pyridine nitrogen atoms. The crystal structure packing is achieved through the hydrogen bonds of O_w⋯O_w, O_w⋯O and O_w⋯N type. Coordinated water molecules are hydrogen bonded to non-coordinated ones at the same time participating in hydrogen bonding with carbonyl oxygen and nitrogen atom from the saccharinato anions. Non-coordinated water molecules participate in hydrogen bonding with the oxygen atoms belonging to the saccharinato CO and SO₂ groups. The hydrogen bond network between the oxygen atoms belonging to the SO₂ group of the saccharinato anions and one of the non-coordinated water molecules (OW3) constructs the centrosymmetric cavity in the structure.     

Water–Water and Water–Solute Interactions in Microsolvated Organic Complexes

A structural study of microsolvated clusters of β‐propiolactone (BPL) formed in a pulsed molecular jet expansion is presented. The rotational spectra of BPL–(H₂O)_n (n=1–5) adducts have been analyzed by broadband microwave spectroscopy. Unambiguous identification of the structures has been achieved using isotopic substitution and experimental measurements of the cluster dipole moment. The observed structures are discussed in terms of the different intermolecular interactions between water molecules and between water and BPL, which include n–π* interactions involving the lone pairs of electrons on water oxygen atoms and the antibonding orbital of the BPL carbonyl group. The changes induced in the structures of the water hydrogen‐bonding network by complexation to BPL indicate that water clusters adopt specific configurations to maximize their links to solute molecules.     

Chemistry of O‐ and H‐Containing Species on the (001) Surface of Anatase TiO2: A DFT Study

The chemistry of oxygen, hydrogen, water, and other species containing both oxygen and hydrogen atoms on the anatase TiO₂ (001) surface is investigated by DFT. The adsorption energy of atoms and radicals depends appreciably on the position and mode of adsorption, and on the coverage. Molecular hydrogen and oxygen interact weakly with the clean surface. However, H₂O dissociates spontaneously to give two nonidentical hydroxyl groups, and this provides a model for hydroxylation of TiO₂ surfaces by water. The mobility of the hydroxyl groups created by water splitting is initially impeded by a diffusion barrier close to 1 eV. The O₂ adsorption energy increases significantly in the presence of H atoms. Hydroperoxy (OOH) formation is feasible if at least two H atoms are present in the direct vicinity of O₂. In the adsorbed OOH, the O? O bond is considerably lengthened and thus weakened.     

Poly[[diaqua(μ3‐3‐nitrophthalato)calcium(II)] monohydrate]

The title 3‐nitrophthalate–calcium coordination polymer, {[Ca(C₈H₃NO₆)(H₂O)₂]·H₂O}_n, crystallizes as a one‐dimensional framework. The Ca^II centre has a distorted pentagonal–bipyramidal geometry, being seven‐coordinated by five O atoms from three different 3‐nitrophthalate groups and by two water molecules, resulting in a one‐dimensional zigzag chain along the a‐axis direction by the interconnection of the four O atoms from the two carboxylate groups. There is a D3 water cluster composed of the coordinated and the solvent water molecules within such chains. Adjacent chains are aggregated into two‐dimensional layers via hydrogen bonds in the c‐axis direction. The whole three‐dimensional structure is further stabilized by weak O—H...O hydrogen bonds between the O atoms of the nitro group and the water molecules.     

Structures Of Tetraammine Salts [Pt(NH3)4](N03)2, [Pd(NH3)4](N03)2, and [Pd(NH3)4]F2 H20

This contribution presents the results of a single crystal X-ray diffraction study of three ammine complexes of bivalent platinum and palladium: [Pt(NH₃)₄](N0₃)2, [Pd(NH₃)₄](N0₃)₂ and [Pd(NH₃)₄]F₂H₂O. The first two compounds are isostructural; metal atoms are located on inversion centers, all other atoms are in general positions. A three-dimensional framework is built from planar-square complex cations and nitrate ions joined by N-H...O hydrogen bonds. In [Pd(NH₃)₄]F₂H₂O, palladium atoms, as in the previous cases, are located on inversion centers, while oxygen atoms of water molecules are on the two-fold symmetry axis. A network of strong N-H...F and O-H...F hydrogen bonds linking the cations, anions, and crystallization water molecules is present in the structure.     

Computer Simulation of the Absorption of CO<Subscript>2</Subscript> Molecules by Water Cluster: 2. The Microstructure

The simulation of the absorption of CO₂ molecules by the (H₂O)₁₀ cluster is performed by the molecular dynamics method using the modified TIP4P model of water. The detailed structure of (CO₂)_i(H₂O)₁₀ clusters (0≤i≤11) is analyzed by the statistic geometry method based on the construction of the Voronoi polyhedra. The obtained distributions of the geometric elements of polyhedra indicate the significant changes in the structure of a cluster after the absorption of one CO₂ molecule. Only polyhedra characterizing the structure of unstable water clusters that absorbed six or seven CO₂ molecules demonstrate a nonsphericity close to the ideal tetrahedron. Linear CO₂ molecule tends to be oriented in a cluster so that the average angle formed by this molecule and permanent dipole moments of water molecules would be equal to about 30°.__________Translated from Kolloidnyi Zhurnal, Vol. 67, No. 3, 2005, pp. 315–321.Original Russian Text Copyright © 2005 by Galashev, Rakhmanova, Chukanov.     

A novel O–Zn bridging polymer complex of 2,6‐bis[bis(carboxylatomethyl)aminomethyl]‐4‐methylphenolate

A new one‐dimensional coordination polymer, catena‐poly[[acetatohexaaqua{μ₄‐2,6‐bis[bis(carboxylatomethyl)aminomethyl]‐4‐methylphenolato}trizinc(II)] octahydrate], [Zn₃(C₁₇H₁₇N₂O₉)(C₂H₃O₂)(H₂O)₆]·8H₂O, is a trinuclear complex consisting of three zinc centers joined by a phenolate bridge and Zn(H₂O)₄ units. In each complex polymer unit, the three Zn atoms have different coordination modes. Of the two phenolate‐bridged Zn ions, one adopts a distorted octahedral coordination composed of two carboxylate ligands, one tertiary N atom, two water molecules and the bridging phenolate ligand, while the other adopts a pyramidal geometry composed of two carboxylate ligands, one tertiary N atom from another coordination arm, one acetate anion as the counter‐anion and the bridging phenolate ligand. The third type of Zn centre is represented by two independent Zn atoms lying on inversion centres. They both have an octahedral coordination consisting of four O atoms from four water molecules and two acetate carbonyl O atoms from the ligand. The latter Zn atoms join the above‐mentioned binuclear complex units through O atoms of the carboxylate groups into an infinite chain. Neighboring aromatic rings are distributed above and below the chain in an alternating manner. Between the coordination chains, the Zn...Zn separations are 5.750 (4) and 6.806 (4) Å. The whole structure is stabilized by hydrogen bonds formed mainly by solvent water molecules.     

The H and H2 interaction with Pd3Cu,Pd4, and Cu4 fcc (111) clusters: A DFT comparative study

A comparative study of adsorption of H atoms and H₂ molecules on Pd₃Cu, Cu₄, and Pd₄ clusters has been performed through density functional calculations, using the hybrid B3LYP exchange‐correlation functional as implemented in the Gaussian98 program. For Pd atoms the relativistic small‐core effective core potential LANL and LANL2DZ basis set was used and for hydrogen a 6‐31G** basis set was used. The main emphasis is set in the reaction behavior of the different clusters with hydrogen atoms and molecules. We find that full geometry optimization does not appreciably change the metal cluster geometry either for certain reaction modes or the H and H₂ capture parameters, but increases the number of reactive sites of the metal clusters. Also, we found that there is charge transfer competition between H and Cu atoms, which drastically diminishes H₂ adsorption energy, related to the Pd cluster observed value. Edges and threefold sites are the principal hydrogen adsorption sites. Hydrogen has a great mobility over the metal clusters for different minima, especially when Cu is present; many initial pathways end in the same adsorption site. The observed hydrogen adsorption and binding energies are well reproduced by the calculations. Also, the adsorption mechanisms were determined. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Theoretical study of fullerene derivatives: C40H4 and C40X4 cluster molecules

Herein we demonstrate that the C₄₀ cluster molecule is easily formed to T_d symmetry structure and its ground state is ⁵A₂ open shell with four unpaired electrons. These four unpaired electrons are located at the tip points of the T_d symmetry structure. This work also indicates that these four unpaired electrons can easily react with a single valence atom, such as hydrogen or halogen atoms, to form a stable carbon hydrogen cluster molecule, C₄₀H₄, and carbon halogen cluster molecules, C₄₀X₄ (X=F, Cl, Br, I), respectively. The PM3 semiempirical molecular orbital method from Gaussian 94W computer program package was applied very well to these cluster molecules. According to the results in this study, the structures of geometrical optimization, ionization potential, energy gap, heat of formation, atomization energy, vibration frequency, and the remaining data of C₄₀H₄ and C₄₀X₄ cluster molecules. The above-calculated data prove that these unknown cluster molecules are stable and have a stable capacity similar to 1,3,5,7-tetrahaloadamantane molecules. They can be possibly synthesized experimentally in the near future. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 68: 273–284, 1998     

Synthesis and crystal structure of [La(NO3)3(H2O)2(BiPy)]·1.5(BiPy)

The molecular and crystal structure of the [La(NO₃)₃(H₂O)₂(2.2′-BiPy)]·1.5(2.2′-BiPy) compound is determined. The metal coordination polyhedron in the La(III) complex is formed from 10 donor atoms of O₈N₂: 6 oxygen atoms belong to three chelate-coordinated NO ₃ ^? anions, 2 oxygen atoms belong to two water molecules, and 2 nitrogen atoms belong to a bidentate bipyridine molecule coordinated in the neutral form. The structure is based on the metal complexes linked together in chains through the O(W)-H...O hydrogen bonds, in which oxygen atoms of the coordinated NO ₃ ^? anions act as acceptors. It is a framework structure, further stabilized by a system of O(W)-H...N and C-H...N hydrogen bonds, in which nitrogen atoms of the uncoordinated bipyridine molecules act as proton acceptors.     

Komplexe mit substituierten 2,5-Dihydroxy-p-benzochinonen: EAC6(C6H5)2O4 · 4 H2O (EA = Sr2+, Ba2+)

Complexes with Substituted 2,5-Dihydroxy-p-benzochinones: EAC₆(C₆H₅)₂O₄ · 4 H₂O (EA = Sr²⁺, Ba²⁺) Single crystals of the isotypic compounds EAC₆(C₆H₅)₂O₄ · 4 H₂O were grown in aqueous silicagel. EA²⁺ has CN 8. It is surrounded by four water molecules and four oxygen atoms of the bis-chelating polyporate dianions. Thereby folded chains are formed which are interlinked by hydrogen bonds. Thus building up corrugated layers with the phenyl substituents almost perpendicular to the layer plane. The layer stacking provides that they can engage into another.     

Synthesis and crystal structure characterization of supramolecular complex [Cd2(Bipy)2(L)2(H2O)2] · 9H2O (H2L = 2,2′-bipyridyl-6,6′-dicarboxylic acid)

In the complex [Cd₂(Bipy)₂(L)₂(H₂O)₂] · 9H₂O, the center atom Cd(II) presents a seven-coordinated pentagonal bipyramidal geometry with seven coordination bonds, four Cd-N bonds, and three Cd-O bonds. X-ray structural analysis shows that nineteen water molecules formed a large water cluster, the cluster and the composition connected to form 2D plane areolar framework and 3D zigzag networks structure through π-π-stacking and hydrogen bonding. This composition in the previous report is rare.     

Poly[diaquabis(μ‐4,4′‐bipyridine‐κ2N:N′)bis(ethane‐1,2‐diol)di‐μ‐sulfato‐dicopper(II)]

The title compound, [Cu₂(SO₄)₂(C₁₀H₈N₂)₂(C₂H₆O₂)₂(H₂O)₂]_n, contains two crystallographically unique Cu^II centres, each lying on a twofold axis and having a slightly distorted octahedral environment. One Cu^II centre is coordinated by two bridging 4,4′‐bipyridine (4,4′‐bipy) ligands, two sulfate anions and two aqua ligands. The second is surrounded by two 4,4′‐bipy N atoms and four O atoms, two from bridging sulfate anions and two from ethane‐1,2‐diol ligands. The sulfate anion bridges adjacent Cu^II centres, leading to the formation of linear ...Cu1–Cu2–Cu1–Cu2... chains. Adjacent chains are further bridged by 4,4′‐bipy ligands, which are also located on the twofold axis, resulting in a two‐dimensional layered polymer. In the crystal structure, extensive O—H...O hydrogen‐bonding interactions between water molecules, ethane‐1,2‐diol molecules and sulfate anions lead to the formation of a three‐dimensional supramolecular network structure.     

Ab initio calculations and molecular dynamics simulation of H2 adsorption on CN3Be3+ cluster

Hydrogen adsorption properties of the CN₃Be₃⁺ cluster have been studied using density functional theory and MP2 method with a 6–31++G** basis set. Five hydrogen molecules get adsorbed on the CN₃Be₃⁺ cluster with a hydrogen storage capacity of 10.98 wt%. Adsorption of three H₂ molecules on one of the three Be atoms in a cluster is reported for the first time. It is due to the more positive charge on this Be atom than the remaining two. The average value for H₂ adsorption energy in CN₃Be₃⁺ (5H₂) complexes is 0.41 (0.43) eV/H₂ at MP2 (wB97XD) level, which fits well within the ideal range. Adsorption energy from electronic structure calculations plays an important role in retaining the number of H₂ molecules on a cluster during atom-centered density matrix propagation (ADMP) molecular dynamics (MD) simulations. According to ADMP-MD simulations, out of five H₂ adsorbed molecules on CN₃Be₃⁺, four and two H₂ molecules remain absorbed on CN₃Be₃⁺ cluster at 275 K and 350 K, respectively, during the simulation.