Internal hydrogen bond,torsional motion,and molecular properties of 2-methoxyethylamine by microwave spectroscopy: Methyl barrier to internal rotation for 2-methoxyethanol

The microwave spectra of four substituted isotopic species of 2-methoxyethylamine (NH₂, NHD, NDH, ND₂) have been assigned. The molecule is found to exist in a gauche form with an intramolecular hydrogen bond of the NH?O type. The four possible sets of the amino hydrogen r_s corrdinates give different H?H distances, probably because the -NH₂ group is involved in large amplitude vibrations and because of changes in the heavy atom positions arising from the deuteration of the hydrogen bond. For the most abundant species many vibrational states have been analyzed and assigned to the two possible CO torsions in the molecule. A value V₃ = 3150 ± 50 cal/mol was found for the methyl torsional barrier and V₁ = 9 ± 3 kcal/mol for the other CO torsional barrier. A third set of observed vibrational satellites is probably assignable to the CC torsion. The determination of the dipole moment and of the quadrupole coupling constants gave values which were not in good agreement with those predicted from nonhydrogen bonded molecules. In addition a value V₃ = 3100 ± 100 cal/mol was calculated for the CH₃ torsional barrier in the related 2-methoxyethanol, using previous experimental data (Canad. J. Chem.50, 1149–1156 (1972)).     

Theoretical determination of the vibrational levels of NH+ 3 and its isotopomers

The vibrational levels associated with the electronic ground state X²A₂″ of NH⁺ ₃ have been determined up to 5000 cm^?1 by perturbation and variational calculations with full dimensionality of the molecule. For the variational part a new version of MULTIMODE was used which uses the ab initio electronic energy and its first derivative to define the potential energy function. These quantities were generated by the B97-1 density functional and RCCSD(T) approaches. For ND⁺ ₃, ND₂H⁺ and NDH⁺ ₂ the vibrational levels were calculated only by perturbation theory. The rotational constants for all the isotopomers were determined and the first transition dipole moments for NH⁺ ₃ and ND⁺ ₃ were plotted. A critical comparison of the perturbation and variational techniques suggests a possible further modification to the MULTIMODE algorithm for large systems.     

Vibration-inversion-rotation spectra of ammonia: A vibration-inversion-rotation Hamiltonian for NH2D and ND2H

The model Hamiltonian developed previously for ammonia NH₃ has been used to study the vibration-inversion-rotation energy levels of the isotopic species of ammonia NH₂D and ND₂H. In this model the inversion motion is removed from the vibrational problem by allowing the molecular reference configuration to be a function of the large amplitude motion coordinate.The ground state inversion-rotation energy levels of NH₂D and ND₂H have been calculated with the use of the zeroth-order inversion-rotation Hamiltonian, and the calculated transition frequencies have been compared with the experimental data.     

The Δk = ±2 perturbation-allowed ν4 band and inversion-rotation energy levels of 15NH3

More than 800 Δk = ±2 and 60 Δk = ±3 forbidden transitions to the ν₄ and 2ν₂ vibrational levels, respectively, have been assigned in the Fourier transform spectra of ¹⁵NH₃, recorded with a pathlength of 96 m. Combination differences derived from these transitions provide information on the spacing between the ground state energy levels with different rotational quantum numbers K in the interval from 0 to 16. These data along with wavenumbers of all the available allowed transitions pertaining to the ground and ν₂ states have been subjected to a simultaneous least-squares analysis using two different parametrization models to obtain precise values of the inversion-rotation energy levels.     

Low temperature electrical conductivity,dielectric constant,and phase transitions in (NH4)2SO4 and (ND4)2SO4

Careful axiswise measurements of d.c. conductivity and dielectric constants of (NH₄)₂SO₄ from 50 to - 196°C establish two distinct phase transitions, instead of one, at temperatures -49.5 and -58°C which remain unchanged in (ND₄)₂SO₄. Explanation based on successive distortions of non-equivalent (NH₄)⁺ is offered. Low temperature transport process in the crystal also is discussed.     

Microwave spectrum,dipole moment,and structure of 3-aminopropanol

The microwave spectra of 3-aminopropanol and three of its deuterium substituted isotopic species have been investigated in the 26.5 to 40 GHz frequency region. The rotational spectrum of only one conformer has been assigned in which presumably a hydrogen bond of the OH---N type exists. The rotational spectra of a number of excited vibrational states have been observed and assignments made for some of these excited states. The average intensity ratio for the rotational transitions between the ground and excited vibrational states indicates that the first excited state is about 120 cm^?1 above the ground state.and the next higher state is roughly 200 cm^?1 above the ground vibrational state. The dipole moment was determined from the Stark effect measurements to be 3.13 ± 0.04 D with its principal axes components as |μ_a| = 2.88 ± 0.03 D, |μ_b| = 1.23 ± 0.04 D and |μ_c| = 0.06 ± 0.01 D. The possibility of another conformer where the hydrogen bond could be of NH---O type was explored, but the spectra of such a conformer could not be identified.     

NQR, NMR and Crystal Structure Studies of [C(NH2)3]2HgX4 (X = Br, I)

The crystal structure of [C(NH₂)₃]₂HgBr₄ has been determined at room temperature: monoclinic, space group C2/c, with a = 10.035(2), b = 11.164(2), c = 13.358(3) Å, β = 111.67(3)°, and Z = 4. The crystal consists of planar [C(NH₂)₃]⁺ and distorted tetrahedral [HgBr₄]^2? ions. The Hg atom is located on a two-fold axis such that two sets of inequivalent Br atoms exist in an [HgBr₄]^2? ion. In accordance with the crystal structure, two ⁸¹Br NQR lines widely separated in frequency were observed between 77 and ca. 380 K. [C(NH₂)₃]₂HgI₄ yielded four ¹²⁷I NQR lines ascribable to m = ±1/2 ? ±3/2 transitions, indicating that its crystal structure is different from the bromide complex. The ¹H NMR T ₁ measurements showed a single minimum for the bromide but two minima for the iodide. The analyses based on the C₃ reorientations of the planar [C(NH₂)₃]⁺ ions gave the activation energies of 29.8 kJ mol^?1 for the bromide, and 30.2 and 40.0 kJ mol^?1 for the iodide.     

The microwave spectra of cyanamide: Conclusions from a transitions

Microwave spectra have been observed for the species NH₂CN, NHDCN, ND₂CN, ¹⁵NH₂CN, NH₂C¹⁵N, ¹⁵ND₂CN and ND₂C¹⁵N. The nonplanar nature of the molecule is confirmed and the following structural parameters obtained N₁N₂ = 2.506 ± 0.002 Å, N₁C = 1.346 ± 0.005 Å, CN₂ = 1.160 ± 0.005 Å, N₁H = 1.001 ± 0.015 Å, HN?₁H = 113°31′ ± 2°, out of plane angle (see text) = 37°58′ ± 1°. (N₁ is the amino nitrogen atom and N₂ that the cyanide group.)     

The microwave spectrum,substitution structure and dipole moment of cyanobutadiyne,HCCCCCN

Cyanobutadiyne (cyanodiacetylene), HCCCCCN, is sufficiently stable at low pressures to permit its rotational spectrum to be studied by microwave spectroscopy. The spectrum consists of a series of R-branch transitions typical of a linear molecule. The transitions with J = 9 to 14 which lie between 26.5 and 40.0 GHz have been measured for the vibrational ground state. Transitions have also been detected in natural abundance for all possible singly substituted ¹³C and ¹⁵N isotopic species. Deuteriated cyanobutadiyne, DCCCCCN, has also been synthesized and its ground state spectrum recorded. These measurements have enabled a complete substitution structure to be derived for the first time for a polyacetylene: r₈(HC_a) = 1.0569 ± 0.001, r₈(C_aC_b) = 1.2087 ± 0.001, r₈(C_bC_c) = 1.3623 ± 0.003, r₈(C_cC_d) = 1.2223 ± 0.004, r₈(C_dC_e) = 1.3636 ± 0.003, $\text{r}{}_8\text{(}\text{C}{}_{\mathrm{e}}\text{}\text{N}\text{) = 1.1606 ± 0.001}\text{A}\text{?}\text{(10}{}^{\mathrm{?10}}\text{m}\text{)}$. The spectroscopic parameters for the ground state are B₀ = 1331.3313 ± 0.001 MHz and D₀ = 0.0257 ± 0.002 KHz. The dipole moment, determined from the Stark effects of the J = 9 and 10 lines, is 4.33 ± 0.03 Debye.     

草酰氯的激光诱导荧光激发谱

本文报道草酰氯C₂O₂Cl₂在358—372.5nm范围的激光诱导荧光(LIF)激发谱。对60多条振动谱带进行了归属,其中24条是吸收光谱中没有的。由振动结构得到C₂O₂Cl₂分子在X基态和?激发态的部分振动频率,其中v＂₇=84cm^-1和v＇₇=164cm^-1是新的数据。对4₀¹振动带的转动结构的分析给出转动常数A=0.190cm^-1,B=0.114cm^-1,C=0.048cm^-1。 关键词：     

Spin-lattice relaxation of protons and deuterons in NH4NO3 and ND4NO3

The spin-lattice relaxation timesT ₁ were measured for protons and deuterons in polycrystalline NH₄NO₃ and ND₄NO₃. The investigation was carried out at temperatures between about 80°K and 430°K using the NMR pulse method. From the measured values ofT ₁ the activation energies for the reorientation motions of NH ₄ ⁺ and ND ₄ ⁺ ions below 200°K were calculated to be 2.07±0.11 kcal/mole and 2.56±0.23 kcal/mole, respectively. The quadrupole coupling constante ² Qq/h of the deuteron in ND ₄ ⁺ ion was found to be 194±30 kc/s.     

Microwave spectrum,structure, dipole moment,quadrupole coupling constant,and internal motion of thioformamide

The r_s structure of thioformamide has been determined from the microwave spectra of the normal as well as isotopic species of the molecule. The structural parameters obtained assuming the planarity of the molecule are $\text{NH}{}_{\mathrm{c}}\text{= 1.001}{}_8\text{± 0.006}\text{A}\text{?}\text{,}\text{NH}{}_{\mathrm{t}}\text{= 1.006}{}_5\text{± 0.003}\text{A}\text{?}\text{,}\text{CN}\text{= 1.358}{}_2\text{± 0.003}\text{A}\text{?}\text{,}\text{CS}\text{= 1.626}{}_2\text{± 0.002}\text{A}\text{?}\text{,}\text{CH}{}_{\mathrm{a}}\text{= 1.09}{}_6\text{± 0.08}\text{A}\text{?}\text{, ?}\text{H}{}_{\mathrm{c}}\text{NH}{}_{\mathrm{t}}\text{, = 121°42′ ± 40′, ?}\text{H}{}_{\mathrm{c}}\text{NC}\text{= 117°55′ ± 40′, ?}\text{H}{}_{\mathrm{t}}\text{NC}\text{= 120°22′ ± 30′, ?}\text{NCS}\text{= 125°16′ ± 15′ ?}\text{NCH}{}_{\mathrm{a}}\text{= 108°}{}_{\mathrm{5\prime }}\text{± 5°,}\text{and}\text{?}\text{SCH}{}_{\mathrm{a}}\text{= 126°}{}_{\mathrm{39\prime }}\text{± 5°}$.The dipole moment is calculated from the Stark effects of the three transitions to be μ_a = 3.99 ± 0.02 D, μ_b = 0.13 ± 0.25 D, and μ_total = 4.01 ± 0.03 D, where the c component is assumed to be zero.The quadrupole coupling constant of the ¹⁴N nucleus is estimated using the doublet splittings observed for six Q-branch transitions; χ_cc - χ_bb = ?5.39 ± 0.15 MHz and χ_aa = 2.9 ± 1.2 MHz.Two sets of vibrational satellites are observed and assigned to the first excited state of the amino wagging and the NCS bending vibrations, respectively. The relative intensity measurement gives the vibrational energies of 393±40 cm^?1 and 457 ± 50 cm^?1 for NH₂CHS and 293 ± 30 cm^?1 and 393 ± 40 cm^?1 for ND₂CHS. The amino wagging inversion vibration in the molecule is discussed in comparison with that in formamide. It is most probable that the thioformamide molecule is also planar without any potential hump to the amino inversion at the planar configuration.     

Simultaneous analysis of the microwave and infrared spectra of 14ND3 and 15ND3 for the ν2 excited state

The data on the inversion spectrum in the ν₂ state of ¹⁴ND₃ [F. Scappini, A. Guarnieri, and G. DiLonardo, J. Mol. Spectrosc.95, 20–29 (1982)] have been extended by measuring frequencies of 25 new transitions. A simultaneous least-squares analysis of these data with the ground state microwave transition frequencies and the diode laser measurements of the ν₂ band has been carried out. Improved sets of molecular parameters have been obtained for ¹⁴ND₃ and ¹⁵ND₃, including the ground and ν₂ state inversion splittings, ν₂ band origins, rotational and centrifugal distortion constants, and the parameters of the Δk = ±3n vibrational-rotational interactions.     

The 5νNH and 5νND vibrational bands of partially deuterated ammonia species

Absorption spectra of gaseous samples containing NH₂D and NHD₂ have been measured in the 11 580-11 880 and 15 280-15 610 cm⁻¹ regions, corresponding to the 5ν_ND and 5ν_NH vibrational bands, respectively. Photoacoustic spectroscopy has been utilized for the measurement. The molecular constants of NH₂D in the 5ν_ND state and NHD₂ in the 5ν_NH state have been determined from the analysis of the obtained absorption spectrum. From the comparison of the constants with those of the vibrational ground states, structural changes caused by the stretching excitations have been elucidated. The HND bond angles are decreased by these excitations. The dependence of the molecular constants on the stretching quantum number has also been derived by simple Birge-Sponer and Dunham analyses.     

Vibrational Spectroscopic Studies of Molecules with Biochemical Interest: The Cysteine Zwitterion

Abstract

The L-cysteine zwitterions in the orthorhombic crystal structure and in aqueous solution, including the deuterated isotopologues HSCD₂CH(NH₃ ⁺)COO^?, DSCH₂CH(ND₃ ⁺)COO^?, and DSCD₂CH(ND₃ ⁺)COO^?, have been studied by mid-infrared, far-infrared, and Raman spectroscopy. Density functional theory (DFT) calculations were performed for an equilibrium molecular geometry of the cysteine zwitterion to obtain vibrational frequencies of fundamental modes, infrared (IR) and Raman intensities, and the depolarization ratio of the Raman bands and combined with normal coordinate force field analyses. The force field obtained for dissolved (in H₂O and D₂O) cysteine, based on the 4 × 36 experimental fundamental modes of the four isotopologues, was successfully transferred to the two conformers in the solid state. The experimentally observed multiple bands (generally doublets) of L-cysteine and its deuterated isotopologues in the solid state were interpreted based on the coexistence of two conformers in the unit cell. The calculated frequencies were used for full assignments of the fundamental IR and Raman vibrational transitions, including an attempt to interpret all low-frequency vibrations (below 400 cm^?1) of the zwitterion also in the solid state. In particular, the hydrogen bonding effects on conformation, bond lengths, and force constants were studied, including those of the distorted NH₃ ⁺ amino group. The –S-H and -S-D stretching vibrations were found to be local modes, not sensitive to deuterium substitution of the -CH₂ and -NH₃ ⁺ groups in the molecule or to the H(D)-S-C-C torsional angle. The two major -S-H or -S-D stretching bands observed in the solid state correspond to different S-H/D bond lengths and resulted in the force constants K _SH = 3.618 N·cm^?1 and 3.657 N·cm^?1 for the SH^… S and SH^… O hydrogen-bonded interactions. A remarkable result was that the S(H)^… O interaction was weaker than the S(H)^… S interaction in the solid state and even weaker in aqueous solution, K _SH = 3.715 N·cm^?1, possibly due to intramolecular interactions between the thiol and amino groups. A general correlation between the S-H/D bond length and vibrational frequency was developed, allowing the bond length to be estimated for sulfhydryl groups in, for example, proteins. The C-S stretching modes were fitted with different C-S stretching force constants, K _CS = 3.213 and 2.713 N·cm^?1, consistent with the different CS bond lengths for the two solid-state conformers.     

Properties of isolated DNA bases, base pairs and nucleosides examined by laser spectroscopy

The vibronic spectra of laser desorbed and jet cooled guanine (G) adenine (A), and cytosine (C) consist of bands from four, two and two major tautomers respectively, as revealed by UV-UV and IR-UV double resonance spectroscopy. The vibronic spectrum of adenine around 277 nm consists of weak nπ^* and strong ππ^* transitions, based on IR-UV and deuteration experiments. Precise ionization potentials of G and A were determined with 2-color, 2-photon ionization. We also measured vibronic and IR spectra of several base pairs. GC exhibits a HNH ^... OH/NH ^... N/C=O ^... HNH bonding similar to the Watson-Crick GC base pair but with C as enol tautomer. One GG isomer exhibits non-symmetric hydrogen bonding with HNH ^... N/NH ^... N/C=O ^... HNH interactions. A second observed GG isomer has a symmetrical hydrogen bond arrangement with C=O ^... NH/NH ^... O=C bonding. Two CC isomers were observed with symmetrical C=O ^... NH/NH ^... O=C bonding and nonsymmetrical C=O ^... HNH/NH ^... N interaction, respectively. Guanosine (Gs), 2-DeoxyGs und 3-DeoxyGs each exhibit only one isomer in the investigated wavelength range around 290 nm with a strong intramolecular sugar(5-OH) ^... enolguanine(3-N) hydrogen bond. Received 16 June 2002 / Received in final form 15 July 2002 Published online 13 September 2002     

Photoionization cross sections: He I- and He II-photoelectron spectra of homologous oxygen and sulphur compounds

The structure of the 1₁₁→1₀₁ transition of ND₂H has been studied by means of millimetre-wave beam maser spectroscopy. Twenty-five components which result from the nitrogen, deuterium, and hydrogen hyperfine interactions have been resolved and theoretically analysed. The theory of three identical particles is discussed and used to fit the beam measer spectra of the J = K = 4 and J = K = 6 inversion transitions of ND₃ which have been reported previously. These results are compared with those of the submillimetre-wave beam maser spectrum of the J = 1 →0 transition of ND₃. By use of molecular and isotopic relations, the results of this work are critically compared with previous centimetre-wave beam maser studies of NH₃ and NH₂D.     

Microwave spectrum and barrier to internal rotation of 1-chloro-2-butyne

Rotational transitions of the μ_a and μ_b type have been identified with microwave-microwave double resonance measurements for 1-chloro-2-butyne in the ground vibrational state. In the first excited state of the methyl torsion only μ_a-type transitions have been identified. The A-type transitions of the ground vibrational state can be described perfectly by the rigid rotor approximation with centrifugal corrections. Using the internal axis method the barrier to internal rotation was determined from the A,E splittings: V₃ = 10.05 ± 0.09 cm⁻¹. A model which allowed for geometry relaxation upon internal rotation was used to fit one set of parameters to the transition frequencies of both ground state and first excited torsional state. The sixfold contribution to the barrier was found to be negligible: V₆ = −0.4 ± 0.3 cm⁻¹.     

High resolution vibration-rotation spectra of carbon suboxide: Molecular constants for the ground state and 2ν70

The infrared spectrum of C₃O₂ was recorded with the vacuum Fourier transform interferometer of Laboratoire Aimé Cotton at a resolution of 0.005 cm^?1. The ground state molecular constants were calculated from lower state combination relations in a simultaneous analysis of six ground state transitions situated in the region 3000 to 5000 cm^?1. Through the analysis of a difference band we established that $\text{2ν}{}_7{}^0$ is 60.7022 ± 0.0005 cm^?1 above the ground vibrational state. Accurate molecular constants were also determined for this vibrational level.