Synthesis and X-ray crystal structure of 3-deoxy-3-fluoro-β-D-allopyranoside

The synthesis of a novel compound, 3-deoxy-3-fluoro--d-allopyranoside, is described. It involves blocking the 4- and 6-positions of allose to cause fluorination only at the 3-position. This six-step synthesis gave pure crystalline compound in a 5% overall yield. The crystal structure, determined by X-ray diffraction, confirmed the chemical formula and configuration of the product. It showed that the C-F bond isaxial, while the C-(OH) bonds areequatorial. The overall conformation of this fluoroallose is similar to that of allose (Acta Cryst.1984,C40, 1863) (with OH instead of F), but the packing in the two crystals is different in the region of C3, the site of chemical variation.     

Synthesis and crystal structure of β-hexanitrohexaazaisowurtzitane

A polycyclic caged compound with high strain—hexanitrohexaazaisowurtzitane (HNIW)—has been synthesized via a three-step reaction: condensation, hydrogenolysis debenzylation and nitrolysis, starting with benzylamine and glyoxal. HNIW is the most powerful high energy density compound (HEDC) ever tested. β-HNIW possesses a caged structure consisting of two five-membered rings and one six-membered ring with a nitro group attached to each of the six bridging nitrogens. The nitro group lies basically within a plane. The lengths of C—C bonds of β-HNIW range from 0. 156 nm to 0.159 nm, 0.002–0.005 nm longer than the sp³ C-C bond. The β-HNIW’s crystal belongs to orthorhombic system and space groupPca2₁ with parameters:a = 0.9670 (2),b = 1.1616 (2),c = 1.3032 (3) nm;V = 1.4638(5) nm³,Z = 4; D_c = 1.989 g/cm³ and D_m = 1.982 g/cm³. Project supported by the Advanced Research Funds (12060451867) from the Commission of Science and Technology for National Defence.     

Synthesis and crystal structure of β-hexanitrohexaazaisowurtzitane

A polycyclic caged compound with high strain——hexanitrohexaazaisowurtzitane (HNIW)——has been synthesized via a three-step reaction: condensation, hydrogenolysis debenzylation and nitrolysis, starting with benzylmine and glyoxal. HNIW is the most powerful high energy density compound (HEDC) ever tested. β-HNIW possesses a caged structure consisting of two five-membered rings and one six-membered ring with a nitro group attached to each of the six bridging nitrogens. The nitro group lies basically within a plane. The lengths of C--C bonds of β-HNIW range from 0.156 nm to 0.159 nm, 0.002--0.005 nm longer than the sp~3 C-C bond. The β-HNIW's crystal belongs to orthorhombic system and space group Pca2_1 with parameters: a=0.9670 (2), b=1.1616 (2), c=1.3032 (3) nm; V=1.4638(5) nm~3, Z=4; D_c=1.989 g/cm~3 and D_m=1.982 g/cm~3.     

Synthesis and x-ray crystal structure of a stable α-chlorooxetane

The Barton modification of the Hunsdiecker reaction is the key step in the preparation of 3,5-anhydro-5R-chloro-1,2-O-isopropylidenexylofuranose (1), a stable α-chlorooxetane.     

Synthesis and crystal structure study of 2′-Se-adenosine-derivatized DNA

The selenium derivatization of nucleic acids is a novel and promising strategy for 3D structure determination of nucleic acids.Selenium can serve as an excellent anomalous scattering center to solve the phase problem,which is one of the two major bottlenecks in macromolecule X-ray crystallography.The other major bottleneck is crystallization.It has been demonstrated that the incorporated selenium functionality at the 2′-positions of the nucleosides and nucleotides is stable and does not cause significant st...     

Synthesis and X-ray crystal structure of oxamido-bridged heterobinuclear Ni(Ⅱ)-Cu(Ⅱ) complexes

The two complexes [Ni(oxen)Cu(L)2](ClO4)2.xH2O (L=2,2'-bipyridyl(bpy), 1,10-phenanthroline(phen)) have been synthesized, where oxen is N,N'-bis(2-aminoethyl)oxamido di-anion. The crystal structure of [Ni(oxen)Cu(bpy)2](ClO4)2.CH3OH has been determined by X-ray diffraction method. The crystal is triclinic system, space group P1 with a=12.179(1),b=12.298(2), c=11.476(2) A, a=97.57(1), B=97.52(1), 7=80.29(2), V=1669.04(67) A3, Z=2, Dcalcd=1.667 g/cm3. The structure has been refined to final R of 0.076 and Rw of 0.080, respectively. The complexes have an extended oxamido-bridged structure and consist of Ni(Ⅱ) ion in a square planar environment and Cu(Ⅱ) ion in a distorted octahedral environment.     

A new building block for electroactive organic materials? Synthesis, cyclic voltammetry, single crystal X-ray structure, and DFT treatment of a unique boron-based viologen

A boronium-based paraquat analog undergoes reductions at more negative potentials than paraquat itself, making it a promising building block for electroactive materials.     

Synthesis,characterization, and X-ray crystal structure analysis of Cd(ΙΙ) and Cu(II) complexes of an acyclic pentadentate Schiff base

Cd(ΙΙ) and Cu(II) complexes of an acyclic pentadentate Schiff base were prepared by template condensation of two equivalents of 2-acetylpyridine with one equivalent of bis(3-aminopropyl)amine in methanol. The resulting complexes [CdL(NO₃)]ClO₄ (1) and [CuL](ClO₄)₂ · CH₃CN (2) were characterized by X-ray crystallography, elemental analysis, IR and mass spectrometry in both cases and by NMR in the case of 1. The X-ray crystallographic structure determination of these complexes revealed six-coordinate distorted octahedral geometry for 1, with the sixth coordination by nitrate and five-coordinate for 2 with trigonal-bipyramidal Cu(II).     

Synthesis and crystal structure of dinuclear nickel (Ⅱ) complex

The crystal structure of Ni(Ⅱ) complex with 3-hydroxyl-1, 5-diazacycloheptane-N, N'-diacetate was determined by X-ray diffraction method. Crystal data for Ni2 (C9H14N2O5)2·2H2O: monoclinic, space group P21/n, a = 1.1717(5), b = 0.9794(3), c = 1.2971(2) nm, β= 96.62(3), V= 1.4786(7) nm3, Dc = 1.377 g/cm3, Z = 2,μ=13.321 cm-1 (Mo-Kα), F(000)=640. The final R and Rw are 0.075 and 0.089 respectively. The Ni(Ⅱ) ion forms 2:2 complex with ligand. Two ligands are bridged by two Ni(Ⅱ) atoms which are bridged by two O atoms. Every Ni(Ⅱ) is coordinated by two N atoms and four 0 atoms. The coordination polyhedron of the Ni(Ⅱ) ion is a distorted octahedron.     

Synthesis and crystal structure of pyridine and methanol coordinated a-octabutyloxyphthalocyaninatocobalt (II)

Phthalocyanines (Pcs) have been widely used as dyes and pigments, photoelectric materials and catalysts. They also bring general attention for potential applications, for example, in solar batteries and fuel cell, charge battery, electrochromic display devices, liquid crystal, sensors and molecular devices. The Pc抯 properties, such as spectroscopic, electronic, and magnetic properties, thermostabilities, and catalytic activities, may be adjusted by modifying the molecular structure. Therefor…     

Synthesis and crystal structure of the lithium perrhenate monohydrate LiReO4·H2O

A new monohydrate of lithium perrhenate LiReO₄·H₂O was prepared by dehydration of LiReO₄·1.5H₂O at room temperature. The single crystals of LiReO₄·H₂O were obtained by crystallisation from the isoamyl acetate solution of LiReO₄·1.5H₂O. The structure of monohydrate (a=5.6674(4), b=10.771(1), c=7.4738(7) Å, β=102.422(7)°, R₁=0.0414, space group P2₁/a, Z=4) is built up from LiO₃(H₂O)₂ trigonal bipyramids and ReO₄ tetrahedra sharing common edges and corners inside the layers. The layers are connected together by hydrogen bonds. The relationships between the structures of sesquihydrate, monohydrate and anhydrous LiReO₄ are discussed.     

Synthesis and X-ray structure of a complex containing the trisimido borate trianion—the imido analogue of the orthoborate trianion

Reaction of BCl₃ with 2-methoxyaniline (1:6 equiv.) in toluene, and subsequent metallation with ⁿBuLi (3 equiv.) produces {[Li₄B(NR)₃·THF]⁺[BⁿBu₄]⁻·toluene}₂ (R=2-methoxyphenyl), which contains the first example of a trisimido borate trianion—the imido analogue of the orthoborate trianion, [BO₃]³⁻.     

Synthesis and crystal structure of cyclotris-(4,4′-thiodiphenylene ketone)

The side reaction of macrocyclization that occurs during the synthesis of poly-(1,4-phenylenesulfide ketone) by polycondensation of a 4,4-dihalobenzophenone with sodium sulfide was studied. It was found that the major product of this reaction is a cyclic trimer, cyclotris-(4,4"-thiodiphenylene ketone) (1). Despite the fact that ketone bridges are more rigid than sulfide bridges, the yield of the macrocycle is rather high, as it is in the synthesis of poly-(1,4-phenylenesulfide), and reaches 20% under high dilution conditions. The structure of 1 was investigated by X-ray diffraction analysis (R = 0.069 on 3138 reflections). Macrocycle 1 is strongly flattened in the crystal; the conformation observed is determined by the packing, since stereochemical analysis indicates high flexibility of the macrocycle. The solvate acetone molecules incorporated in the crystal are disordered, nevertheless, they are strongly fixed in the cavities and channels of the crystal structure.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1460–1466, August, 1994.     

Synthesis and crystal structure of pyridine and methanol coordinated α-octabutyloxyphthalocyaninatocobalt (II)

Crystal structure of pyridine and methanol axially coordinated 1,4,8,11,15,18,22,25-octabutyloxyphthalocyaninatocobalt(II)(viz. α-octabutyloxyphthalocyaninatocobalt) [(n-BuO)₈Pc]. Co(Py)(MeOH) (1) was determined by X-ray diffraction methods. Crystal data: monoclinic, space group P2₁/n, Z = 4, a = 1.06482(4), b = 3.5487(2), c = 1.79428(9) nm, β=103.246(2)°, V = 6.5792(5) nm³, μ = 0.325 mm^-1. The result shows that the ring skeleton of 1 maintains planar conformation, which is similar to that of unsubstituted phthalocyanine but is remarkably different from the saddle shape conformation of 1,4,8,11,15,18,22,25-octabutyloxyphthalocyaninatocopper (II) [(n-BuO)₈Pc]Cu(2), which has no axial coordination. In the structure of 1, the substituents butyloxy groups of 1 somewhat deviate from the ring plane, while pyridine and methanol are coordinated to the center atom Co from opposite sides of the ring plane. In addition, all molecules are stacked along axis a to form one-dimensional molecule chain, the neighboring molecules in the chain overlap to some extent with a benzene ring and a distance of 0.3565 nm.     

Synthesis and crystal structure of mercury(II) chloride–ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid) adduct

A mercury(II) chloride adduct of ferron (7-iodo-8-hydroxyquinoline-5-sulfonic acid), [HgCl₂ (C₉H₆INO₄)·H₂O] has been synthesized and characterized by X-ray diffraction analysis and spectroscopic studies. The compound crystallizes in P2₁/c space group, a?=?8.919(3), b?=?23.216(3), c?=?7.714(3)?Å, β?=?95.79(3)°. The coordination geometry around mercury is distorted square planar [(2+2) coordination] with two short Hg–Cl bonds [2.308(2) and 2.309(18)?Å] and two long Hg–O(sulfonate) [2.738(4)?Å] and Hg–O(water) [2.889(4)?Å] bonds. The sulfonic group is deprotonated, the proton having migrated to the quinoline N atom that forms intermolecular hydrogen bonds. The inversion related organic ligands are stacked over one another. The crystal structure is further stabilized by a C–H···O, O–H···O and N–H···O hydrogen bonds.     

Methoxyl-induced fluorescence quenching in N,N′-bridged 9H-dipyrrinones and an X-ray crystal structure

Strongly fluorescent dipyrrinones can be prepared by bridging the pyrrole and lactam nitrogens with a carbonyl group, from reaction with N,N′-carbonyldiimidazole in the presence of a strong, non-nucleophilic base. The yellow, N,N′-carbonyl-bridged dipyrrinones typically have fluorescent quantum yields (φ_F) approaching 1.0. Thus, in chloroform, N,N′-bridged 9H-dipyrrinones with β-alkyl substituents: 2,3-diethyl-7,8-dimethyl has φ_F = 0.90 (λ_em = 465 nm) and 2,3-dimethyl-7,8-dimethoxy has φ_F = 0.84 (λ_em = 482 nm). In contrast, 2,3-dimethoxy-7,8-dimethyl and 2,3,7,8-tetramethoxy show red-shifted λ_em but with strongly reduced φ_F: φ_F = 0.10 (λ_em = 511 nm) and 0.08 (λ_em = 511 nm), respectively. Methoxy substituents on the lactam, but not the pyrrole ring act to quench the fluorescence and shift the emission and excitation wavelengths bathochromically. The first X-ray crystal structure of an N,N′-carbonyl-bridged dipyrrinone was obtained from 7,8-dimethoxy-2,3-dimethyl-10H-dipyrrin-1-one. Correspondence: David A. Lightner, Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020, USA.     

Synthesis,X-ray crystal structure,DFT calculations,spectroscopic characterization and redox behaviour of a rhodium(III) complex of an anthracene–pyridylhydrazone ligand

Transition Metal Chemistry - A pyridylhydrazone incorporating an anthracene moiety, designated as HLAnc, has been synthesized in order to examine its coordination behaviour towards rhodium(III)....     

Are terminal aryl butadiynes stable? Synthesis and X-ray crystal structures of a series of aryl- and heteroaryl-butadiynes (Ar-CC-CC-H)

The synthesis and isolation are reported of a range of terminal aryl- and heteroaryl-butadiynes (ArCC-CCH) 4a-h from 2-methyl-6-(aryl/heteroaryl)hexa-3,5-diyn-2-ol precursors. The stability of 4a-h in solution is concentration dependent: many of the derivatives can be stored as dilute solutions for several days or even weeks. The X-ray crystal structures have been obtained for five ArCC-CCH derivatives [Ar = 2-(9-fluorenonyl), 4-biphenyl, 2-pyridyl, 4-pyridyl, and 2-pyrazyl].     

Synthesis and crystal structure of cobalt(III) α-dioximates with pyrazine

A series of new coordination compounds of cobalt(III) trans-dioximates with pyrazine [CoCl(DH)₂Pz] · H₂O (I), [CoBr(DH)₂Pz] · H₂O (II), [Co(DH)₂Pz₂]NO₃ · H₂O (III), [Co(DH)₂Pz₂][BF₄] (IV), [Co(MgH)₂Pz₂][BF₄] (V), and [Co(NioxH)₂Pz₂][BF₄] (VI), where DH, MgH, and NioxH are dimethylglyoxime, methylglyoxime, and 1,2-cyclohexanedionedioxime monoanions, respectively, Pz is a pyrazine molecule were synthesized. The structures of compounds I, II, and VI were determined by X-ray diffraction. The Co(III) environment in these compounds is octahedral and the pseudomacrocyclic (DioxH⁻)₂ fragment occurs in the equatorial plane. This fragment is stabilized by O-H…O hydrogen bonds. The neutral Pz ligand is monodentate in all three compounds.