Involvement of water in carbohydrate-protein binding.

The interactions of trimannosides 1 and 2 with Con A were studied to reveal the effects of displacement of well-ordered water molecules on the thermodynamic parameters of protein-ligand complexation. Trisaccharide 2 is a derivative of 1, in which the hydroxyl at C-2 of the central mannose unit is replaced by a hydroxyethyl moiety. Upon binding, this moiety displaces a conserved water molecule present in the Con A binding site. Structural studies by NMR spectroscopy and MD simulations showed that the two compounds have very similar solution conformational properties. MD simulations of the complexes of Con A with 1 and 2 demonstrated that the hydroxyethyl side chain of 2 can establish the same hydrogen bonds in a low energy conformation with the protein binding site as those mediated by the water molecule in the complex of 1 with Con A. Isothermal titration microcalorimetry (ITC) measurements showed that 2 has a more favorable entropy of binding compared to 1. This term, which was expected, arises from the return of the highly ordered water molecule to bulk solution. The favorable entropy term was, however, offset by a relatively large unfavorable enthalpy term. This observation was rationalized by comparing the extent of hydrogen bond and solvation changes during binding. It is proposed that an indirect interaction through a water molecule will provide a larger number of hydrogen bonds in the complex that have higher occupancies than in bulk solution, thereby stabilizing the complex.     

Complexation studies of Cm(III), Am(III), and Eu(III) with linear and cyclic carboxylates and polyaminocarboxylates

Solvent extraction and potentiometric titration methods have been used to measure the stability constants of Cm(III), Am(III), and Eu(III) with both linear and cyclic carboxylates and polyaminocarboxylates in an ionic strength of 0.1?mol?L^?1 (NaClO₄). Luminescence lifetime measurements of Cm(III) and Eu(III) were used to study the change in hydration upon complexation over a range of concentrations and pH values. Aromatic carboxylates, phthalate (1,2 benzene dicarboxylates, PHA), trimesate (1,3,5 benzene tricarboxylates, TSA), pyromellitate (1,2,4,5 tetracarboxylates, PMA), hemimellitate (1,2,3 benzene tricarboxylates, HMA), and trimellitate (1,2,4 benzene tricarboxylates, TMA) form only 1?:?1 complexes, while both 1?:?1 and 1?:?2 complexes were observed with PHA. Their complexation strength follows the order: PHA～TSA>TMA>PMA>HMA. Carboxylate ligands with adjacent carboxylate groups are bidentate and replace two water molecules upon complexation, while TSA displaces 1.5 water molecules of hydration upon complexation. Only 1?:?1 complexes were observed with the macrocyclic dicarboxylates 1,7-diaza-4,10,13-trioxacyclopentadecane-N,N′-diacetate (K21DA) and 1,10-diaza-4,7,13,16-tetraoxacyclooctadecane-N,N′-diacetate (K22DA); both 1?:?1 and 1?:?2 complexes were observed with methyleneiminodiacetate (MIDA), hydroxyethyleneiminodiacetate (HIDA), benzene-1,2-bis oxyacetate (BDODA), and ethylenediaminediacetate (EDDA), while three complexes (1?:?1, 1?:?2, and 1?:?3) were observed with pyridine 2,6 dicarboxylates (DPA) and chelidamate (CA). The complexes of M-MIDA are tridentate, while that of M-HIDA is tetradentate in both 1?:?1 and 1?:?2 complexes. The M-BDODA and M-EDDA complexes are tetradentate in the 1?:?1 and bidentate in the 1?:?2 complexes. The complexes of M-K22DA are octadentate with one water molecule of hydration, while that of K21DA is heptadentate with two water molecules of hydration. Simple polyaminocarboxylate 1,2 diaminopropanetetraacetate (PDTA) and ethylenediamine N,N′-diacetic-N,N′-dipropionate (ENDADP) like ethylenediaminetetraacetate (EDTA) form only 1?:?1 complexes and their complexes are hexadentate. Polyaminocarboxylates with additional functional groups in the ligand backbone, e.g., ethylenebis(oxyethylenenitrilo) tetraacetate (EGTA), and 1,6 diaminohexanetetraacetate (HDTA) or with additional number of groups in the carboxylate arms diethylenetriamine pentaacetato-monoamide (DTPA-MA), diethylenetriamine pentaacetato-bis-methoxyethylamide (DTPA-BMEA), and diethylenetriamine pentaacetato-bis glucosaamide (DTPA-BGAM) are octadentate with one water molecule of hydration, except N-methyl MS-325 which is heptadentate with two water molecules of hydration and HDTA which is probably dimeric with three water molecules of hydration. Macrocyclic tetraaminocarboxylate, 1,4,7,10-tetraazacyclododecanetetraacetate (DOTA) forms only 1?:?1 complex which is octadentate with one water molecule of hydration. The functionalization of these carboxylates and polycarboxylates affect the complexation ability toward metal cations. The results, in conjunction with previous results on the Eu(III) complexes, provide insight into the relation between ligand steric requirement and the hydration state of the Cm(III) and Eu(III) complexes in solution. The data are discussed in terms of ionic radii of the metal cations, cavity size, basicity, and ligand steric effects upon complexation.     

Buried solvent determines both anion-binding selectivity and binding stoichiometry with hydrogen-bonding receptors

[reaction: see text] The crystal structure of a tetraurea picket porphyrin-chloride anion complex has previously shown the anion to be situated between two adjacent ureas and hydrogen bonded via four NH protons (J. Am. Chem. Soc. 1998, 120, 11684-11692). The porphyrin receptor also binds a DMSO molecule and utilizes it as a participant in its anion recognition unit, in a manner similar to enzymes that bind water for use as part of their substrate recognition unit. The bound solvent molecule determines the anion-binding affinity, selectivity, and stoichiometry of binding. With a bound DMSO molecule, the tetraurea picket porphyrin is a highly selective receptor for chloride anion and binds all anions with a 1:1 binding stoichiometry. Absent the buried DMSO molecule, the receptor is selective for phosphate anion and binds chloride and phosphate anions with both 1:1 and 1:2 receptor-anion stoichiometries. Additionally, a remarkable reversal in the selectivity of anion complexation between various picket porphyrin receptors is observed, wherein the binding constant ratios change over 3 orders of magnitude as the receptor's number of urea pickets change from four to two. The latter receptor has no urea pickets available to bind to solvent after complexation with an anion. The results demonstrate that anion complexation with hydrogen-bonding receptors in a competitive solvent is enhanced when a ubiquitous solvent molecule is incorporated into the binding motif. In this way, competitive solvent adds to the overall complexation energy and thereby strengthens binding rather than weakens it, as commonly believed. The results are pertinent to drug design, for they suggest that pharmaceuticals need not be completely desolvated to selectively bind to their biological target when water can be included in the binding motif.     

FTIR and Ab initio investigations of the MTBE-water complex

The infrared spectrum of methyl tert-butyl ether (MTBE) in liquid water has been studied using both FTIR absorption and FTIR-ATR spectroscopy in conjunction with ab initio calculations. Compared to the liquid MTBE IR spectrum, the C-O and C-C stretching vibrational frequencies of MTBE in water are found to shift to the red and blue by up to 26 and 9 cm (-1), respectively. Ab initio calculations suggest that these shifts are caused by complexation of the MTBE molecule with water molecules through hydrogen bonding. Our observation of the vibrational frequency shifts in the IR spectrum of MTBE in water provides the IR spectroscopic evidence of organics-water complexes in the diluted aqueous solution. The implication of the effect of the hydrogen bond in organics-water complexation on solvation and reactivity of the organic compound in aqueous chemical processes is discussed.     

Revisiting the geometry of nd10 (n+1)s0 [M(H2O)]p+ complexes using four-component relativistic DFT calculations and scalar relativistic correlated CSOV energy decompositions (M(p+) = Cu+, Zn2+, Ag+, Cd2+, Au+, Hg2+)

Hartree-Fock and DFT (B3LYP) nonrelativistic (scalar relativistic pseudopotentials for the metallic cation) and relativistic (molecular four-component approach coupled to an all-electron basis set) calculations are performed on a series of six nd10 (n+1)s0 [M(H2O)]p+ complexes to investigate their geometry, either planar C2v or nonplanar C(s). These complexes are, formally, entities originating from the complexation of a water molecule to a metallic cation: in the present study, no internal reorganization has been found, which ensures that the complexes can be regarded as a water molecule interacting with a metallic cation. For [Au(H2O)]+ and [Hg(H2O)]2+, it is observed that both electronic correlation and relativistic effects are required to recover the C(s) structures predicted by the four-component relativistic all-electron DFT calculations. However, including the zero-point energy corrections makes these shallow C(s) minima vanish and the systems become floppy. In all other systems, namely [Cu(H2O)]+, [Zn(H2O)]2+, [Ag(H2O)]+, and [Cd(H2O)]2+, all calculations predict a C2v geometry arising from especially flat potential energy surfaces related to the out-of-plane wagging vibration mode. In all cases, our computations point to the quasi-perfect transferability of the atomic pseudopotentials considered toward the molecular species investigated. A rationalization of the shape of the wagging potential energy surfaces (i.e., single well vs. double well) is proposed based on the Constrained Space Orbital Variation decompositions of the complexation energies. Any way of stabilizing the lowest unoccupied orbital of the metallic cation is expected to favor charge-transfer (from the highest occupied orbital(s) of the water ligand), covalence, and, consequently, C(s) structures. The CSOV complexation energy decompositions unambiguously reveal that such stabilizations are achieved by means of relativistic effects for [Au(H2O)]+, and, to a lesser extent, for [Hg(H2O)]2+. Such analyses allow to numerically quantify the rule of thumb known for Au+ which, once again, appears as a better archetype of a relativistic cation than Hg2+. This observation is reinforced due to the especially high contribution of the nonadditive correlation/relativity terms to the total complexation energy of [Au(H2O)]+.     

A luminescent coordination polymer based on bisterpyridyl ligand containing o-carborane: two tunable emission modes

We designed a novel ditopic bisterpyridyl ligand containing o-carborane that can construct a coordination polymer by complexation with metal ions. Through the use of Sonogashira-Hagihara coupling, the desired ligand molecule was successfully synthesized. Addition of Zn(II) ions rapidly underwent the generation of a fluorescent coordination polymer, which was confirmed by (1)H NMR, UV-vis, and fluorescent titration experiments. Furthermore, the electronic structure of the bisterpyridyl ligand molecules was drastically changed upon the complexation with metal ions. The obtained coordination polymer showed light blue emission derived from the intraligand charge transfer (ILCT) state, whereas a bare ligand molecule exhibited yellowish-green aggregation-induced emission (AIE) in a poor solvent such as water, because of the variable C-C bond in o-carborane.     

Tweezer分子的合成和对有机阴离子的配位效应

本文报道新的Ｔｗｅｅｚｅｒ（１）的合成，用＾１ＨＮＭＲ研究了新的Ｔｗｅｅｚｅｒ分子和对硝基苯甲酸盐的配位效应，结果表明它兴通过氢键，静电引力和芳环夹心堆叠作用而自动缔合。     

Clip[4]arene: synthesis,rigid acyclic C-shaped structure,and redox-controlled host–guest complexation

Here we report the synthesis of a novel, easily available and rigid acyclic C-shaped host??clip[4]arene. It has the ability to bind electron-poor pyridinum salts in solution. A bipyridinum salt, paraquat, is found to have a 1:1 complexation stoichiometry in acetone but a 2:1 complexation stoichiometry in the solid state with clip[4]arene. Unlike traditional [2]pseudorotaxanes with structures of linear guest molecules threaded into macrocyclic hosts, the complex of clip[4]arene and paraquat is rather a [2]pseudoclipaxane where a linear molecule is threaded through a rigid acyclic C-shaped molecule. Furthermore, the complexation between clip[4]arene and paraquat is redox-controlled and can be reversibly regulated through the sequential addition of Zn powder and exposure to air.     

Metal Complexes with Macrocyclic Ligands. XV. The Complexation Kinetics of Open Chain and Cyclic Tetraazaligands with Ni2+ in DMSO and DMF

The complexation kinetics of 2,6,9, 13-tetraazatetradecane (1) , 1,4,8, 11-tetraazacyclotetradecane (2) and N,N′,N″,N'-tetramethyl-1,4,8, 11-tetraazacyclotetradecane (3) with Ni²⁺ were studied by the stopped-flow technique in DMSO and DMF. The biomecular rate constants k_L^Ni (Table 2) follow in both solvents the order 1 ? 2 > 3. The similar complexation rates of 1 and 2 in their unprotonated form indicate that for both the open chain and the cyclic ligand the same mechanism holds. By comparison with the solvent exchange the rate determining step of the complexation is the dissociation of the first solvent molecule in the outer-sphere complex. The lower reactivity of 3 is probably due to steric effects. In the case of 2 a second step in the complexation process was observed and explained by a rearrangement of the ligand already coordinated to the metal ion.     

Complexes of poly(ethylene oxide)-block-poly(L-glutamate) and diminazene

Nanoparticles with a mean hydrodynamic radius of 16 nm and low polydispersity (P.I. = 0.1) were spontaneously formed by the complexation of poly(ethylene oxide)-block-poly(L-glutamate) (PEO-b-PLGlu) with diminazene. Only one of two possible binding sites of each diminazene molecule was involved in complexation. As determined by UV-vis difference spectra measurements, the complex binding constant is on the order of 1-2 x 10(4) M(-1). Circular dichroism measurements showed that the highly water-soluble diminazene can induce and stabilize the alpha-helical secondary structure of a PLGlu block.     

Inclusion Complex of β-cyclodextrin with CTAB in Aqueous Solution

Cetyltrimethylammonium bromide (CTAB)/potassium bromide (KBr) micellar system has been used as a viscosity probe to study the inclusion complexation between β-cyclodextrin (β-CD) and CTAB. Viscosity measurements show that the inclusion complexation between β-CD and CTAB may cause the breakdown of CTAB/KBr wormlike micelles, resulting in the decrease of the solution viscosity. The viscosity minimum at C_β-CD/C_CTAB=2 indicate the molecular ratio of host molecule to guest molecule is 2:1 in the β-CD/CTAB inclusion complex.     

Electrospray mass spectrometric investigation of the binding of cis-parinaric acid to bovine beta-lactoglobulin and study of the ligand-binding site of the protein using limited proteolysis

The binding property of parinaric acid, a polyunsaturated fatty acid, to bovine beta-lactoglobulin, has been studied by electrospray ionization mass spectrometry. Stable complexation was observed under acidic conditions in a molar ratio of 1:1. Competitive complexation experiments were performed using saturated and unsaturated fatty acid standards with different chain lengths and number of double bonds to study the specificity of the interaction. It can be concluded that formation of the parinaric acid-lactoglobulin complex is preferred even if the molar concentration of the other fatty acids is ten times higher. In cases of specific complex formation the protein must have an active site that is a good acceptor for the ligand molecule. Limited trypsinolysis was performed on the lactoglobulin molecule to identify which part is responsible for the complexation. An intermediate tryptic fragment with molecular mass of 5200 Da was found to have the same ability to bind parinaric acid as the intact protein. This disulfide-bonded residue, [41-70]S-S[149-162], might thus be involved in the specific complexation of parinaric acid to beta-lactoglobulin. This conclusion is consistent with previous information on this binding site.     

High-resolution spectroscopy of methyl 4-hydroxycinnamate and its hydrogen-bonded water complex

The electronic structure and spectroscopic properties of the lower excited singlet states of methyl 4-hydroxycinnamate, a model for the chromophore of the photoactive yellow protein in neutral form, have been investigated using various high-resolution gas-phase spectroscopic techniques and quantum-chemical calculations. The experiments show that under our experimental conditions the molecule can adopt four conformations with similar spectroscopic properties. From the detailed assignment of the vibrationally active modes in excitation and emission spectra, it is concluded that the S(1) and S(2) states should be assigned to the V' and V pipi* states that are characterized by, respectively, small and large contributions of the HOMO --> LUMO excitation. We find that complexation with a single water molecule affects the spectroscopic properties of methyl 4-hydroxycinnamate considerably in terms of stabilization of the lowest excited singlet state but in particular with respect to the transition intensities. The latter observation is tentatively interpreted as being caused by an increase in the oscillator strength of the respective electronic transition as well as by a rise/removal of conical intersections with the pisigma* state.     

Thermodynamic, spectroscopic, and computational studies of lanthanide complexation with diethylenetriaminepentaacetic acid: temperature effect and coordination modes

Stability constants of two DTPA (diethylenetriaminepentaacetic acid) complexes with lanthanides (ML(2-) and MHL(-), where M stands for Nd and Eu and L stands for diethylenetriaminepentaacetate) at 10, 25, 40, 55, and 70 °C were determined by potentiometry, absorption spectrophotometry, and luminescence spectroscopy. The enthalpies of complexation at 25 °C were determined by microcalorimetry. Thermodynamic data show that the complexation of Nd(3+) and Eu(3+) with DTPA is weakened at higher temperatures, a 10-fold decrease in the stability constants of ML(2-) and MHL(-) as the temperature is increased from 10 to 70 °C. The effect of temperature is consistent with the exothermic enthalpy of complexation directly measured by microcalorimetry. Results by luminescence spectroscopy and density functional theory (DFT) calculations suggest that DTPA is octa-dentate in both the EuL(2-) and EuHL(-) complexes and, for the first time, the coordination mode in the EuHL(-) complex was clarified by integration of the experimental data and DFT calculations. In the EuHL(-) complex, the Eu is coordinated by an octa-dentate H(DTPA) ligand and a water molecule, and the protonation occurs on the oxygen of a carboxylate group.     

Inclusion complexation of chloropropham with β-cyclodextrin: preparation, characterization and molecular modeling

An inclusion complex between the agrochemical chloropropham (CIPC) and β-cyclodextrin (β-CD) was prepared. A 2:1 host-guest stoichiometry was conformed by elemental analysis. From the phase solubility studies, the calculated stepwise stability constants were K(1)=224.6L/mol and K(2)=939.2L/mol, respectively. FT-IR, thermoanalysis and (1)H NMR spectra were applied to characterize the complex. It was speculated that the inclusion mode was two β-CD cavities included the chlorophenyl and the isopropyl moiety of one CIPC molecule, which was in agreement with the most predominant configuration optimized by molecular modeling. By complexation with β-CD, the water solubility and the thermal stability of CIPC were prominently improved.     

9,10-二(苯亚甲基-硫亚甲基)蒽的合成及其对Cu2+的识别

荧光分子开关和分子识别是超分子化学的重要组成部分。蒽环作为一个优良的荧光基团被广泛应用于分子开关的设计及分子识别中。Resorci-narenes母体衍生物的合成研究中采用蒽环作为荧光基团已被报道多次[1-4],Luigi Fabbrizzi合成的多氨基蒽衍生物[5]对Zn2 具有良好的PET效应。蒽系荧光分子在分子逻辑门系统中日益受到了研究者的重视,de Silva等在研究中发现一蒽环化合物[6]在Mg2 作用存在OR逻辑行为。在后续研究中发现两类蒽环化合物在一定条件下分别存在AND[7]和NOR[8]逻辑行为。在分子识别的研究中,Shin-ichi Sasaki合成的含穴状…     

A [2]rotaxane-based (1)H NMR spectroscopic probe for the simultaneous identification of physiologically important metal ions in solution

We describe a [2]rotaxane molecule that exhibits distinct signals in its (1)H NMR spectra upon the complexation of physiologically important Li(+), Na(+), Mg(2+) and Ca(2+) ions; thus, the identification of these metal ions in solution is possible from the analysis of a single (1)H NMR spectrum of a single molecular sensor.     

Supramolecular Interactions of Nonsteroidal Anti‐inflammatory Drug in Nanochannels of Molecular Containers: A Spectroscopic,Thermogravimetric and Microscopic Investigation

Supramolecular host–guest complexation between the nonsteroidal anti‐inflammatory drug indomethacin (IMC) and molecular containers were investigated. The weakly fluorescent drug molecule becomes highly fluorescent on complexation with different molecular containers, and time‐resolved fluorescence emission spectroscopy reveals that the lifetime components of IMC significantly increase in the presence of molecular containers, compared with the lifetimes in neat water. The respective solid host–guest complexes were synthesised and characterised by Fourier transform infrared and ¹H nuclear magnetic resonance spectroscopic analysis. Microscopy techniques were used to analyse modifications of the surface morphology, owing to the formation of supramolecular complexes. The effect of the molecular container on the optical properties of IMC has also been investigated to determine the effect of nanochannels of different size and structure.     

An unprecedented example of a cis-phosphonodithioato nickel(II) complex built by an extensive hydrogen bonding supramolecular network

The P-N bond hydrolysis of the 4-methoxyphenyl-ammonium ethylamido-phosphonodithioato ligand during its complexation to NiII leads to the first example of phosphonodithioato nickel(II) complex having a cis configuration; this complex is stabilised in the solid state by an extensive and intricate network of hydrogen bondings involving the released ethylenediamine and a water molecule.     

The formation of complexes by asymmetrical tricyclic hosts

The five asymmetrical tricyclic hosts (9, a-c) and (10, a and b) were synthesised from the mono-protected diaza crown others (7a) and (7c). These hosts form 1:1 complexes with bis-alkylammonium cations H₃N+CH_2nN+H₃. A detailed examination of the complexes of host (10a), using 'H NMR spectroscopy, shows that in most cases complexation involves a single conformation of the host molecule. Competition experiments show that the selectivity of complexation by this host involves at least two different conformations of the -CH₂(CH₂OCH₂)₂CH₂- bridge. Complexes formed by the analogous host (10b) involve, to a major extent, a single conformation (17a) of the host molecule.