Primary semiclassical kinetic hydrogen isotope effects in identity carbon-to-carbon proton- and hydride-transfer reactions, an ab initio and DFT computational study

Enthalpies of activation, transition state (ts) geometries, and primary semiclassical (without tunneling) kinetic isotope effects (KIEs) have been calculated for eleven bimolecular identity proton-transfer reactions, four intramolecular proton transfers, four nonidentity proton-transfer reactions, eleven identity hydride transfers, and two 1,2-intramolecular hydride shifts at the HF/6-311+G, MP2/6-311+G, and B3LYP/6-311++G levels. We find the KIEs to be systematically smaller for hydride transfers than for proton transfers. This outcome is not the result of "bent" transition states, although extreme bending can lower the KIE. Rather, it is a consequence of generally greater total bonding in a hydride-transfer ts than in a proton-transfer ts, most prominently manifested as a reduced contribution from the zero-point vibrational energy difference between reactant and transition states (the DeltaZPVE factor) for hydride transfers relative to proton transfers. This and other differences between proton and hydride transfers are rationalized by modeling the central .C...H...C unit of a proton-transfer ts as a 4-electron, 3-center (4-e 3-c) system and the same unit of a hydride-transfer ts as a 2-e 3-c system. Inclusion of tunneling is most likely to magnify the observed differences between proton-transfer and hydride-transfer KIEs, leaving our qualitative conclusions unchanged.     

Facile metal free regioselective transfer hydrogenation of polarized olefins with ammonia borane

Transfer hydrogenation of polarized olefins bearing strongly electron-withdrawing groups on one side of the double bond was achieved with ammonia borane under mild conditions without using a catalyst. Mechanistic studies proved the character of the direct H transfers proceeding stepwise with a unique hydroboration intermediate and hydride before proton transfer.     

Catalytic reaction mechanism of L-lactate dehydrogenase: an ab initio study

Studies on the catalytic reaction mechanism of L-lactate dehydrogenase have been carried out by using quantum chemical ab initio calculation at HF/6-31G* level. It is found that the interconversion reaction of pyruvate to L-lactate is dominated by the hydride ion HR- transfer, and the transfers of the hydride ion HR and proton HR are a quasi-coupled process, in which the energy barrier of the transition state is about 168.37 kJ/mol. It is shown that the reactant complex is 87.61 kJ/mol lower, in energy, than the product complex. The most striking features in our calculated results are that pyridine ring of the model cofactor is a quasi-boat-like configuration in the transited state, which differs from a planar conformation in some previous semiempirical quantum chemical studies. On the other hand, the similarity in the structure and charge between the HR transfer process and the hydrogen bonding with lower barrier indicates that the HR transfer process occurs by means of an unusual manner. In addition,     

Charge at the migrating hydrogen in the transition state of hydride transfer reactions from CH groups to hydride acceptors. Dynamics of the redox‐couple NADH‐NAD+

We consider the controversial conclusions of the charge at the migrating hydrogen in the transition state of hydride‐transfer reactions from CH‐groups to hydride acceptors. Quantum chemical calculations were performed on elementary organic reactions involving carbenium ions, which can be considered as hydride acceptors. We also discuss the biochemical hydride‐transfer reactions in which the coenzyme NADH‐NAD⁺ plays an important role. With the calculations and the experimental model systems, an answer is given for the stereospecificity of the hydride transfer. Generally, the hydride transfer occurs via a trigonal pyramidal geometry in which the transferred hydride of the CH‐group is located in the axial position. In the case of the coenzyme NADH‐NAD⁺, the hydride transfer is coupled with an out‐of‐plane orientation of the carboxamide group of the pyridinium moiety, resulting in an increased stereospecificity. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Density functional study on enantioselective reduction of keto oxime ether with borane catalyzed by oxazaborolidine

Chiral amino alcohols have interesting biological activities and are used widely as chiral ligands in metal-mediated organic reactions[1―3]. Although many amino alcohols can be derived from the available amino acids, the asymmetric synthesis is an important method to get novel amino alcohols. Tillyer et al.[4] reported a new, highly stereoselective synthesis of cyclic (1S,2R)-cis amino alcohols A from keto oxime ethers B, via the enantioselective reduction catalyzed by oxazaborolidine C in …     

Stable mechanistically-relevant aromatic-based carbenium ions in zeolite catalysts

The existence of carbenium ion species is assumed in many zeolite catalysis mechanisms. Using computational techniques that include environmental effects, a benzenium-type carbenium ion is identified in zeolite catalysts for the first time. Localization of nearby transition states indicate that this species may play an important role as an intermediate in the bimolecular m-xylene disproportionation reaction. The barrier to back-donation of the proton from the benzenium ion is at least 50 kJ/mol, meaning that this species may be spectroscopically observable. An additional carbenium ion intermediate, formed by abstraction of a hydride from m-xylene, is also predicted. The stability of this second new carbenium ion suggests that aromatic-based carbenium ions are likely to be intermediates in many zeolite-catalyzed reactions. Two types of fundamentally different fully periodic calculations support the stability predictions.     

B(C6F5)3‐Catalyzed Transfer of Dihydrogen from One Unsaturated Hydrocarbon to Another

A transition‐metal‐free transfer hydrogenation of 1,1‐disubstituted alkenes with cyclohexa‐1,4‐dienes as the formal source of dihydrogen is reported. The process is initiated by B(C₆F₅)₃‐mediated hydride abstraction from the dihydrogen surrogate, forming a Brønsted acidic Wheland complex and [HB(C₆F₅)₃]^?. A sequence of proton and hydride transfers onto the alkene substrate then yields the alkane. Although several carbenium ion intermediates are involved, competing reaction channels, such as dihydrogen release and cationic dimerization of reactants, are largely suppressed by the use of a cyclohexa‐1,4‐diene with methyl groups at the C1 and C5 as well as at the C3 position, the site of hydride abstraction. The alkene concentration is another crucial factor. The various reaction pathways were computationally analyzed, leading to a mechanistic picture that is in full agreement with the experimental observations.     

Quantum chemical study on enantioselective reduction of keto oxime ether with borane catalyzed by oxazaborolidine. Part 3. Properties of intermediates during hydride transfer

In the current article, the structures and properties of intermediates during the hydride transfer for the prior coordination of the carbonyl oxygen of keto oxime ether at B(2) of oxazaborolidine are discussed. All the structures are optimized completely by means of the Hartree–Fock (HF) and the density functional methods at the HF/6‐31G(d) and Becke's three‐parameter exchange functional and the gradient‐corrected functional of Lee, Yang, and Paar (B3LYP)/6‐31G(d) levels. The hydride transfer from BH₃ to the carbonyl carbon in oxazaborolidine‐borane‐keto oxime ether adduct results in the formation of the adduct 4a* with a seven‐membered ring. This adduct has four stable structures. Another hydride of BH₂ transfers to the oxime carbon in 4a* , leading to the adduct 5a* , which has also four stable structures. Among all the structures of 5a* , the most stable structure can generate (1S, 2R)‐cis amino alcohol, which is in agreement with that obtained in the experiment. This enantioselective reduction may go through the process in which oxazaborolidine‐borane‐keto oxime ether adduct is directly transformed into the adduct 4a* with a seven‐membered ring. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 307–316, 2003     

Concomitant hydride and proton transfer: an essay on competing and consecutive key reactions occurring in gaseousion/neutral complexes

The interplay of proton transfer and hydride transfer reactions in alkylbenzenium ions and related protonated di- and oligophenylalkanes is presented and discussed. While intra- and interannular proton exchange has been recognised to be an ubiquitous feature in protonated arenes, hydride abstraction is much less obvious but can become a dominating fragmentation channel in metastable ions of tert-butyl-substituted alkylbenzenium ions and related carbocations. In such cases, proton-induced release of the tert-butyl cation gives rise to ion/neutral complexes as reactive intermediates, for example, [(CH(3))(3)C(+)...arylCH(2)(α)(CH(2))(n)CH(2)(ω)aryl '] with n ≥ 0, and highly regioselective intra-complex hydride transfer occurs from all of the benzylic methylene hydride ion donor groups (α-CH(2) and ω-CH(2)) to the tert-butyl cation acting as a Lewis acid. Substituent effects on the individual contributions to the overall hydride transfer from different donor sites, including ortho-methyl groups, in particular, and the concomitant intra- complex proton transfer from the tert-butyl cation to the neutral diarylalkane constituent corroborate the view of "bisolvated" complexes as the central intermediates, in which the carbenium ion is coordinated to both of the aromatic π-electron systems. The role of cyclisation processes converting the benzylic, [M - H](+) type, ions into the isomeric benzenium, [M + H](+)-type, ions prior to fragmentation is demonstrated for several cases. This overall scenario, consisting of consecutive and/or competing intra-complex hydride abstraction and proton transfer, intraannular proton shifts (H+ ring walk) and interannular proton transfer, hydrogen exchange ("scrambling") processes, and cyclisation and other electrophilic substitution reactions, is of general importance in this field of gas-phase ion chemistry, and more recent examples concerning protonated ethers, benzylpyridinium and benzylammmonium ions are discussed in which these recurring features play central and concerted mechanistic roles as well.     

USHY分子筛催化剂上2-甲基戊烷异构化反应机理

根据实验观察, 以C6正碳离子基元反应为基础定量地描述了2-甲基戊烷在USHY分子筛上异构化反应机理, 以及反应温度对其的影响. 实验结果表明, 在400 ℃下, C6正碳离子从反应物分子提取氢离子反应的速率是C6正碳离子释放质子氢给表面Brфnsted碱基反应速率的10倍, 导致反应物的异构体C6烷烃产物的生成大大快于C6烯烃产物的生成. 同时发现, C6正碳离子释放质子反应比从反应物分子提取氢离子反应要求更高的活化能, 因此在高温下, C6烷烃产物的生成量比C6烯烃产物的生成量少. 描述了各种C6正碳离子的反应途径和相互转变机理, 定量地比较了它们的反应活性和选择性, 得出了某些烃催化裂化中异构化反应选择性变化的普遍规律.     

The protonation of allene and some heteroallenes, a computational study

Protonation of allene and seven heteroallenes, X = Y = Z, at the terminal and central positions has been studied computationally at the MP2/6-311+G**, B3LYP/6-31+G**, and G3 levels. In all but one case protonation at a terminal position is preferred thermodynamically. The exception is allene, where protonation at C2 giving allyl cation prevails by about 10 kcal/mol over end-protonation, which gives the 2-propenyl cation. In the heteroallenes, protonation at a terminal carbon is strongly favored, activated by electron donation from the other terminal atom. Transition states for identity proton-transfer reactions were found for 10 of the "end-to-end" proton transfers. When the transfer termini are heteroatoms these processes are barrier free. We found no first-order saddle point structures for "center-to-center" proton transfers. An estimate of DeltaH++ for an identity center-to-center proton transfer could be made only for the reaction between the allyl cation and allene; it is approximately 22 kcal/mol higher than DeltaH++ for the end-to-end proton transfer between the 2-propenyl cation and allene. First-order saddle points for the proton transfer from H3S+ to both C1 and C2 of allene were found. The difference in activation enthalpies is 9.9 kcal/mol favoring protonation at C1 in spite of the thermodynamic disadvantage. We infer that protonation of X = Y = Z at central atoms passes through transition states much like primary carbenium (nitrenium, oxenium) cations, poorly conjugated with the attached vinylic or heterovinylic group. Several other processes following upon center protonation were studied and are discussed in the text, special attention being given to comparison of open and cyclic isomers.     

Quantum chemical study on enantioselective reduction of aromatic ketones catalyzed by chiral cyclic sulfur‐containing oxazaborolidines. Part 2. Structures of catalyst–borane–ketone adducts

In the present paper, the ab initio molecular orbital method is employed to study the structures of the adducts of borane and aromatic ketone to chiral cyclic sulfur‐containing oxazaborolidine used as a catalyst in the enantioselective reduction of aromatic ketone. The catalyst–borane–ketone adducts have four different structures. All the structures are optimized completely by means of the Hartree–Fock method at 6‐31g* basis sets. The structure which is of the greatest advantage to a hydride transfer from the borane moiety to the carbonyl carbon of aromatic ketone is the one with the next lowest formation energy, and the plausible transition state for the hydride transfer is predicted to be of a twisted boat structure. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 78: 252–260, 2000     

Can hydridic-to-protonic hydrogen bonds catalyze hydride transfers in biological systems?

Catalysis of hydride transfer by hydridic-to-protonic hydrogen (HHH) bonding in α-hydroxy carbonyl isomerization reactions was examined computationally in the lithium salts of 7-substituted endo-3-hydroxybicyclo[2.2.1]hept-5-en-2-ones. The barrier for intramolecular hydride transfer in the parent system was calculated to be 17.2 kcal/mol. Traditional proton donors, such as OH and NH(3)(+), stabilized the metal cation-bridged transition state by 1.4 and 3.3 kcal/mol, respectively. Moreover, among the conformers of the OH systems, the one in which the proton donor is able to interact with the migrating hydride (H(m)) has an activation barrier lower by 1.3 and 1.7 kcal/mol than the other possible OH conformers. By contrast, the presence of an electronegative group such as F, which disfavors the migration electronically by opposing development of hydridic charge, destabilizes the hydride migration by 1.5 kcal/mol relative to the epimeric exo system. In both ground and transition states the H(m)···H distance decreased with increasing acidity of the proton donor, reaching a minimum of 1.58 ? at the transition state for NH(3)(+). Both Mulliken and NPA charges show enhancement of negative character of the migrating hydride in the cases in which HHH bonding is possible.     

Quantum chemical study on the mechanism of enantioselective reduction of prochiral ketones catalyzed by oxazaborolidines

The ab initio molecular orbital study on the mechanism of enantioselective reduction of 3,3-dimethyl butanone-2 with borane catalyzed by chiral oxazaborolidine is performed. As illustrated, this enantioselective reduction is exothermic and goes mainly through the formations of the catalyst-borane adduct, the catalyst-borane-3,3-dimethyl butanone-2 adduct, and the cata-lyst-alkoxyborane adduct with a B-O-B-N 4-member ring and through the decomposition of the catalyst-alkoxyborane adduct with the regeneration of the catalyst. During the hydride transfer in the catalyst-borane-3,3-dimethyl butanone-2 adduct to form the catalyst-alkoxyborane adduct, the hydride transfer and the formation of the B-O-B-N 4-member ring in the catalyst-alkoxyborane adduct happen simultaneously. The controlling step for the reduction is the transfer of hydride from the borane moiety to the carbonyl carbon of 3,3-dimethyl butanone-2. The transition state for the hydride transfer is a twisted chair structure and the reduction leads to     

Mechanistic imperatives for aldose-ketose isomerization in water: specific, general base- and metal ion-catalyzed isomerization of glyceraldehyde with proton and hydride transfer.

The deuterium enrichment of dihydroxyacetone obtained from the aldose-ketose isomerization of D,L-glyceraldehyde in D(2)O at 25 degrees C was determined by (1)H NMR spectroscopy from the integrated areas of the signals for the alpha-CH(2) and alpha-CHD groups of the product. One mole equivalent of deuterium is incorporated into the product when the isomerization is carried out in 150 mM pyrophosphate buffer at pD 8.4, but only 0.6 mol equiv of deuterium is incorporated into the product of isomerization in the presence of 0.01 M deuterioxide ion, so that 40% of the latter isomerization reaction proceeds by the intramolecular transfer of hydride ion. Several pathways were identified for catalysis of the isomerization of glyceraldehyde to give dihydroxyacetone. The isomerization with hydride transfer is strongly catalyzed by added Zn(2+). Deprotonation of glyceraldehyde is rate-determining for isomerization with proton transfer, and this proton-transfer reaction is catalyzed by Br?nsted bases. Proton transfer also occurs by a termolecular pathway with catalysis by the combined action of Br?nsted bases and Zn(2+). These results show that there is no large advantage to the spontaneous isomerization of glyceraldehyde in alkaline solution with either proton or hydride transfer, and that effective catalytic pathways exist to stabilize the transition states for both of these reactions in water. The existence of separate enzymes that catalyze the isomerization of sugars with hydride transfer and the isomerization of sugar phosphates with proton transfer is proposed to be a consequence of the lack of any large advantage to reaction by either of these pathways for the corresponding nonenzymatic isomerization in water.     

A brief review on structural concepts of novel supramolecular proton transfer compounds and their metal complexes

Our research group has been interested in synthesis of proton transfer compounds as new supramolecular synthons for the onepot preparation of self-assembled transition metal complex-organo-networks since 2000. We have focused on the proton delivery from acids, which are considered as suitable proton donors, to amines as proton acceptors. The results were production of several proton transfer ion pairs possessing some remaining donor sites applied for coordination to metallic centers in preparation of metal-organic structures. Some of the complexes showed contributions of both cationic and anionic fragments of the starting ion pair, while some others contained only one of these species as ligand. Much of the investigations on reviewed compounds focused on the concept of supramolecular systems, co-crystallization, stereochemically active lone pairs, coordination polyhedron and mainly on various interactions involve including van der Waals, ion pairing, hydrogen bondings, face to face π-π stackings and edge to face C-H...π, C-O...π, N-H...π, S-O...π, Ti...π and Hg-Cl...π interactions. The mentioned interactions are the most commonly used strategies in the extension of supramolecular structures.     

Catalytic reaction mechanism of L-lactate dehydrogenase: an ab initio study

Studies on the catalytic reaction mechanism of L-lactate dehydrogenase have been carried out by using quantum chemical ab initio calculation at HF/6-31G* level. It is found that the interconversion reaction of pyruvate to L-lactate is dominated by the hydride ion H_r transfer, and the transfers of the hydride ionH _r and protonH _r are a quasi-coupled process, in which the energy barrier of the transition state is about 168.37 kJ/mol. It is shown that the reactant complex is 87.61 kJ/mol lower, in energy, than the product complex. The most striking features in our calculated results are that pyridine ring of the model cofactor is a quasi-boat-like configuration in the transited state, which differs from a planar conformation in some previous semiempirical quantum chemical studies. On the other hand, the similarity in the structure and charge between theH _r transfer process and the hydrogen bonding with lower barrier indicates that the H_r transfer process occurs by means of an unusual manner. In addition, in the transition state the electrostatic interaction between the substrate and the active site of LDH is quite strong and the polarization of the carbonyl in the substrate is gradually enhanced accompanying the formation of the transition state. These calculated results are well in accord with the previous experimental studies, and indicate that the charge on the hydride ion H_r is only +0.13e in the transition state, which is in agreement with the reported semiempirical quantum chemical calculations.     

Catalytic reaction mechanism of L-lactate dehydrogenase: anab initio study

Studies on the catalytic reaction mechanism of L-lactate dehydrogenase have been carried out by using quantum chemical ab initio calculation at HF/6-31G* level. It is found that the interconversion reaction of pyruvate to L-lactate is dominated by the hydride ion H_r transfer, and the transfers of the hydride ionH _r and protonH _r are a quasi-coupled process, in which the energy barrier of the transition state is about 168.37 kJ/mol. It is shown that the reactant complex is 87.61 kJ/mol lower, in energy, than the product complex. The most striking features in our calculated results are that pyridine ring of the model cofactor is a quasi-boat-like configuration in the transited state, which differs from a planar conformation in some previous semiempirical quantum chemical studies. On the other hand, the similarity in the structure and charge between theH _r transfer process and the hydrogen bonding with lower barrier indicates that the H_r transfer process occurs by means of an unusual manner. In addition, in the transition state the electrostatic interaction between the substrate and the active site of LDH is quite strong and the polarization of the carbonyl in the substrate is gradually enhanced accompanying the formation of the transition state. These calculated results are well in accord with the previous experimental studies, and indicate that the charge on the hydride ion H_r is only +0.13e in the transition state, which is in agreement with the reported semiempirical quantum chemical calculations.     

Ab initio Study on Enantioselective Reduction of Ketones Catalyzed by Thiazolidino[3,4-c]oxazaborolidines

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Kinetics of the interaction of ketyl and semiquinone radicals with dioxygen. Concerted electron and proton transfer involving ketyl and semiquinone radicals

Kinetics of the interaction of ketyl and neutral semiquinone radicals with dioxygen was studied by the flash photolysis technique. The reactivity of neutral semiquinone radicals in the transfer of a hydrogen atom to O₂ is lower than that of ketyl radicals and increases as the reduction ability of the radicals increases, which give evidence for the charge transfer from the radicals to O₂ in the transition state of the reaction. The deuterium kinetic isotope effect of the reaction (up to 2.6) suggests considerable weakening of the O−H bond of the seminquinone radical in the transition state. A cyclic structure of the transition state similar to that in the reactions of ketyl radicals with hydrogen atom acceptors is proposed. In aprotic volvents, solvation has essentially no effect on the reactivity of neutral anthrasemiquinone radicals up to solvent nucleophilicityB≈240. In solvents with higher nucleophilicity and in protic solvents, their reactivity drops sharply. Hydrogen atom transfer reactions involving ketyl and neutral semiquinone radicals are shown to involve concerted electron and proton transfers, and to have transition states in which the partial transfer of an electron and a proton from the ketyl or semiquinone radical to an acceptor occurs. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1131–1137, June, 1997.