Changes in Porcine Muscle Water Characteristics during Growth—An in Vitro Low-Field NMR Relaxation Study

This study investigates the effects of developmental stage and muscle type on the mobility and distribution of water within skeletal muscles, using low-field ¹H-NMR transverse relaxation measurements in vitro on four different porcine muscles (M. longissimus dorsi, M. semitendinosus, M. biceps femoris, M. vastus intermedius) from a total of 48 pigs slaughtered at various weight classes between 25 kg and 150 kg. Principal component analysis (PCA) revealed effects of both slaughter weight and muscle type on the transverse relaxation decay. Independent of developmental stage and muscle type, distributed exponential analysis of the NMR T₂ relaxation data imparted the existence of three distinct water populations, T_2b, T₂₁, and T₂₂, with relaxation times of approximately 1–10, 45–120, and 200–500 ms, respectively. The most profound change during muscle growth was a shift toward faster relaxation in the intermediate time constant, T₂₁. It decreased by approx. 24% in all four muscle types during the period from 25 to 150 kg live weight. Determination of dry matter, fat, and protein content in the muscles showed that the changes in relaxation time of the intermediate time constant, T₂₁, during growth should be ascribed mainly to a change in protein content, as the protein content explained 77% of the variation in the T₂₁ time constant. Partial least squares (PLS) regression revealed validated correlations in the region of 0.58 to 0.77 between NMR transverse relaxation data and muscle development for all the four muscle types, which indicates that NMR relaxation measurements may be used in the prediction of muscle developmental stage.     

Dynamics of Spin I=3/2 under Spin-Locking Conditions in an Ordered Environment

We have derived approximate analytic solutions to the master equation describing the evolution of the spin I=3/2 density operator in the presence of a radio-frequency (RF) field and both static and fluctuating quadrupolar interactions. Spectra resulting from Fourier transformation of the evolutions of the on-resonance spin-locked magnetization into the various coherences display two satellite pairs and, in some cases, a central line. The central line is generally trimodal, consisting of a narrow component related to a slowly relaxing mode and two broad components pertaining to two faster relaxing modes. The rates of the fast modes are sensitive to slow molecular motion. Neither the amplitude nor the width of the narrow component is affected by the magnitude of the static coupling, whereas the corresponding features of the broad components depend in a rather complicated manner on the spin-lock field strength and static quadrupolar interaction. Under certain experimental conditions, the dependencies of the amplitudes on the dynamics are seen to vanish and the relaxation rates reduce to relatively simple expressions. One of the promising emerging features is the fact that the evolutions into the selectively detected quadrupolar spin polarization order and the rank-two double-quantum coherence do not exhibit a slowly relaxing mode and are particularly sensitive to slow molecular motion. Furthermore, these coherences can only be excited in the presence of a static coupling and this makes it possible to discern nuclei in anisotropic from those in isotropic environment. The feasibility of the spin-lock pulse sequences with limited RF power and a nonvanishing average electric field gradient has been demonstrated through experiments on sodium in a dense lyotropic DNA liquid crystal.     

Relaxation Behavior of Laser-Polarized Xe Gas: Size Dependency and Wall Effect of the T1 Relaxation Time in Glass and Gelatin Bulbs

Size dependency of the relaxation time T₁ was measured for laser-polarized ¹²⁹Xe gas encapsulated in different sized cavities made by glass bulbs or gelatin capsules. The use of laser-polarized gas enhances the sensitivity a great deal, making it possible to measure the longer ¹²⁹Xe relaxation time in quite a short time. The size dependency is analyzed on the basis of the kinetic theory of gases and a relationship is derived in which the relaxation rate is connected with the square inverse of the diameter of the cavity. Such an analysis provides a novel parameter which denotes the wall effect on the relaxation rate when a gas molecule collides with the surface once in a second. The relaxation time of ¹²⁹Xe gas is also dependent on the material which forms the cavity. This dependency is large and the relaxation study using polarized ¹²⁹Xe gas is expected to offer important information about the state of the matter of the cavity wall.     

Introducing Physical Relaxation Terms in Bloch Equations

The Bloch equation models the evolution of the state of electrons in matter described by a Hamiltonian. To model more physical phenomena we have to introduce phenomenological relaxation terms. The introduction of these terms has to conserve some positiveness properties. The aim of this paper is to review possible relaxation models and to provide insight into how to discretize them properly in view of numerical computations.     

NMR Relaxation and Diffusion Measurements on Iron(III)-Doped Kaolin Clay

Kaolin clay samples were mixed with various amounts of Fe₂O₃ powder. The influence of this magnetic impurity on NMR relaxation and diffusion measurements on the water in this porous material was investigated. The NMR relaxation measurements showed a nearly mono-exponential decay, leading to the conclusion that the pore size distribution of the clay samples is either narrow and/or that the pores are interconnected very well. Both the longitudinal and the transverse relaxation rate depend linearly on the concentration of the Fe₂O₃ impurity. The NMR diffusion measurements revealed that the Fe₂O₃ causes internal magnetic field gradients that largely exceed the maximum external gradient that could be applied by our NMR apparatus (0.3 T/m). Additional SQUID measurements yielded the magnetization and magnetic susceptibility of the samples at the magnetic field strength used in the NMR measurements (0.8 T). A theoretical estimate of the internal magnetic field gradients leads to the conclusion that the water in the porous clay samples cannot be described by the commonly observed motional averaging regime. Probably an intermediate or a localization regime is induced by the large internal gradients, which are estimated to be on the order of 1 to 10 T/m in the pore volume and may exceed 1000 T/m at the pore surface.     

Linewidth-Resolved N HSQC, a Simple 3D Method to Measure N Relaxation Times from T1 and T2 Linewidths

A three-dimensional approach for measuring ¹⁵N relaxation times is described. Instead of selecting particular values for the relaxation period, in the proposed method the relaxation period is incremented periodically in order to create a 3D spectrum. This additional frequency domain of the transformed spectrum contains the relaxation time information in the T₁ and T₂ linewidths, and thus the longitudinal and transverse ¹⁵N relaxation times can be measured without determination of 2D cross peak volumes/intensities and subsequent curve fitting procedures.     

Determination of the chemical shielding tensor orientation from two or one of the three conventional rotations of a single crystal

Chemical shift anisotropy (CSA) is an immensely useful interaction to study the structure, dynamics, and function of a wide variety of chemical and biological molecules. Traditionally the only unambiguous way to determine both the principal values and the orientation of the principal axes of the CSA tensor has been to follow the chemical shift frequency changes as a crystal of known structure is rotated relative to the direction of the external magnetic field. This classic method employs rotations about three mutually orthogonal axes of a single crystal. It is shown here that just two, or one, of the above rotations suffice to determine the CSA tensor orientation by borrowing, the easy to obtain, principal values of CSA from an independent source. Methods for using two rotation patterns or even a single rotation pattern are described and illustrated with known chemical shielding tensors.     

A Composite Scheme for Gas Dynamics in Lagrangian Coordinates

One cycle of a composite finite difference scheme is defined as several time steps of an oscillatory scheme such as Lax–Wendroff followed by one step of a diffusive scheme such as Lax–Friedrichs. We apply this idea to gas dynamics in Lagrangian coordinates. We show numerical results in two dimensions for Noh's infinite strength shock problem and the Sedov blast wave problem, and for several one-dimensional problems including a Riemann problem with a contact discontinuity. For Noh's problem the composite scheme produces a better result than that obtained with a more conventional Lagrangian code.     

Implementation Aspects of 3D Lattice-BGK: Boundaries, Accuracy, and a New Fast Relaxation Method

In many realistic fluid-dynamical simulations the specification of the boundary conditions, the error sources, and the number of time steps to reach a steady state are important practical considerations. In this paper we study these issues in the case of the lattice-BGK model. The objective is to present a comprehensive overview of some pitfalls and shortcomings of the lattice-BGK method and to introduce some new ideas useful in practical simulations. We begin with an evaluation of the widely used bounce-back boundary condition in staircase geometries by simulating flow in an inclined tube. It is shown that the bounce-back scheme is first-order accurate in space when the location of the non-slip wall is assumed to be at the boundary nodes. Moreover, for a specific inclination angle of 45 degrees, the scheme is found to be second-order accurate when the location of the non-slip velocity is fitted halfway between the last fluid nodes and the first solid nodes. The error as a function of the relaxation parameter is in that case qualitatively similar to that of flat walls. Next, a comparison of simulations of fluid flow by means of pressure boundaries and by means of body force is presented. A good agreement between these two boundary conditions has been found in the creeping-flow regime. For higher Reynolds numbers differences have been found that are probably caused by problems associated with the pressure boundaries. Furthermore, two widely used 3D models, namelyD₃Q₁₅andD₃Q₁₉, are analysed. It is shown that theD₃Q₁₅model may induce artificial checkerboard invariants due to the connectivity of the lattice. Finally, a new iterative method, which significantly reduces the saturation time, is presented and validated on different benchmark problems.     

Millimeter-Wave Spectroscopy, High-Resolution Infrared Spectrum, ab Initio Calculations, and Molecular Geometry of FPS

The transient thiophosphenous fluoride FPS was produced by pyrolysis of 2.5% F₂PSPF₂ in Ar at 1300–1800°C. High-resolution (≥0.004 cm⁻¹) Fourier transform infrared spectra of the a-type ν₁ and b-type ν₂ bands, centered respectively at 803.249 and 726.268 cm⁻¹, were measured and fitted to rotational and quartic centrifugal distortion parameters. The millimeter-wave spectrum, essentially b-type, was measured between 300 and 370 GHz in the ground state and in the ν₃ excited state for FP³²S and in the ground state for FP³⁴S. The frequencies were fitted to a Watson-type A-reduced Hamiltonian up to sextic distortion terms. High level ab initio calculations with large basis sets were performed on FPS and supported the first identification of its infrared and millimeter wave spectra. The calculated anharmonic force field provided precise ab initio rovibrational α constants which were combined with the experimental molecular parameters to determine an accurate equilibrium structure of the molecule: r_e(PS)=188.86 pm, r_e(PF)=158.70 pm, θ(FPS)=109.28°. The collision-controlled 1/e lifetime measured in a 10-Pa (1 : 20) F₂PSPF₂/Ar mixture was 2 s, more than two orders of magnitude larger than that of FPO under the same experimental conditions.     

The effects of dissolved oxygen upon amide proton relaxation and chemical shift in a perdeuterated protein

The effects of dissolved molecular oxygen upon amide proton ((1)H(N)) longitudinal and transverse relaxation rates and chemical shifts were studied for a small protein domain, the second type 2 module of fibronectin ((2)F2)-isotopically enriched to 99% (2)H, 98% (15)N. Longitudinal relaxation rate enhancements, R(O(2))((1)H(N)), of individual backbone (1)H(N) nuclei varied up to 14 fold between a degassed and oxygenated (1 bar) solution, indicating that the oxygen distribution within the protein is inhomogeneous. On average, smaller relaxation rate enhancements were observed for (1)H(N) nuclei associated with the core of the protein compared to (1)H(N) nuclei closer to the surface, suggesting restricted oxygen accessibility to some regions. In agreement with an O(2)-(1)H(N) hyperfine interaction in the extreme narrowing limit, the (1)H(N) transverse relaxation rates showed no significant change, up to an oxygen pressure of 9.5 bar (the maximum pressure used in this study). For most (1)H(N) resonances, small deltadelta(O(2))((1)H(N)) hyperfine chemical shifts could be detected between oxygen pressures of 1 bar and 9.5 bar.     

IR Spectrum of C8H2: Integrated Band Intensities and Some Observational Implications

Polyynes are of astrophysical interest since they appear to be involved in organic chemistry in very different mediums. In Titan's atmosphere, the lightest polyyne, C₄H₂, was detected by Voyager. Recently C₄H₂ and C₆H₂ have been discovered in a protoplanetary nebula, suggesting polyynes as a possible chemical pathway to PAH (polycyclic aromatic hydrocarbons). Moreover, several experimental simulations and modeling imply their production from the photochemistry of methane and their involvement in the formation of organic aerosols. After the study of C₄H₂ and C₆H₂ spectra in the UV and IR wavelength range, we report here the first spectrum of gaseous C₈H₂ in the range 400–4000 cm⁻¹ at room temperature and low resolution. The task was hardly achieved because of the high instability of this molecule with temperature and pressure. To avoid exothermic polymerization, the compound as mixed with a solvent. We have performed a separate spectroscopic study of the solvent to determine C₈H₂ partial pressure within the mixture. This allowed us to calculate C₈H₂ integrated band intensities. In the studied wavelength range, C₈H₂ presents three main bands similar to those of C₆H₂ in terms of vibrational type, position, and relative intensity. To study the possible identification of these polyynes by spatial observatories (Cassini–Huygens, ISO), we have also measured the C₆H₂ and C₈H₂ infrared spectra in the range 400–1500 cm⁻¹ at 0.35 cm⁻¹ resolution.     

A New Two-Dimensional Pulse Sequence for T2* Measurements of Protons in C Isotopomers

A new two-dimensional pulse sequence for T₂* measurement of protons directly coupled to ¹³C spins is proposed. The sequence measures the tranverse relaxation time of heteronuclear proton single-quantum coherence under conditions of free precession and is therefore well suited to evaluate relaxation losses of proton magnetization during preparation delays of heteronuclear pulse experiments in analytical NMR. The relevant part of the pulse sequence can be inserted as a “building block” into any direct or inverse detecting H,C correlation pulse sequence if proton spin–spin relaxation is to be investigated. In this contribution, the building block is inserted into a HETCOR as well as into a HMQC pulse sequence. Experimental results for the HETCOR-based sequence are given.     

The Lattice Solid Model to Simulate the Physics of Rocks and Earthquakes: Incorporation of Friction

The particle-based lattice solid model developed to study the physics of rocks and the nonlinear dynamics of earthquakes is refined by incorporating intrinsic friction between particles. The model provides a means for studying the causes of seismic wave attenuation, as well as frictional heat generation, fault zone evolution, and localisation phenomena. A modified velocity–Verlat scheme that allows friction to be precisely modelled is developed. This is a difficult computational problem given that a discontinuity must be accurately simulated by the numerical approach (i.e., the transition from static to dynamical frictional behaviour). This is achieved using a half time step integration scheme. At each half time step, a nonlinear system is solved to compute the static frictional forces and states of touching particle-pairs. Improved efficiency is achieved by adaptively adjusting the time step increment, depending on the particle velocities in the system. The total energy is calculated and verified to remain constant to a high precision during simulations. Numerical experiments show that the model can be applied to the study of earthquake dynamics, the stick–slip instability, heat generation, and fault zone evolution. Such experiments may lead to a conclusive resolution of the heat flow paradox and improved understanding of earthquake precursory phenomena and dynamics.     

The First in Vivo Observation of C–N Coupling in Mammalian Brain

[5-¹³C,¹⁵N]Glutamine, with ¹J(¹³C–¹⁵N) of 16 Hz, was observed in vivo in the brain of spontaneously breathing rats by ¹³C MRS at 4.7 T. The brain [5-¹³C]glutamine peak consisted of the doublet from [5-¹³C,¹⁵N]glutamine and the center [5-¹³C,¹⁴N]glutamine peak, resulting in an apparent triplet with a separation of 8 Hz. The time course of formation of brain [5-¹³C,¹⁵N]glutamine was monitored in vivo with a time resolution of 20–35 min. This [5-¹³C,¹⁵N]glutamine was formed by glial uptake of released neurotransmitter [5-¹³C]glutamate and its reaction with ¹⁵NH₃ catalyzed by the glia-specific glutamine synthetase. The neurotransmitter glutamate C5 was selectively¹³C-enriched by intravenous [2,5-¹³C]glucose infusion to ¹³C-label whole-brain glutamate C5, followed by [¹²C]glucose infusion to chase ¹³C from the small and rapidly turning-over glial glutamate pool, leaving ¹³C mainly in the neurotransmitter [5-¹³C]glutamate pool, which is sequestered in vesicles until release. Hence, the observed [5-¹³C,¹⁵N]glutamine arises from a coupling between ¹³C of neuronal origin and ¹⁵N of glial origin. Measurement of the rate of brain [5-¹³C,¹⁵N]glutamine formation provides a novel noninvasive method of studying the kinetics of neurotransmitter uptake into glia in vivo, a process that is crucial for protecting the brain from glutamate excitotoxicity.     

An Efficient Finite Element Method for Computing Spectra of Photonic and Acoustic Band-Gap Materials: I. Scalar Case

The paper describes an efficient finite element method for computing spectra of photonic and acoustic band-gap materials. In the photonic case only the scalar models are treated. The full vector model will be considered in the next publication.     

3D Analysis of Crystal/Melt Interface Shape and Marangoni Flow Instability in Solidifying Liquid Bridges

Solidification of gallium (Pr=0.02) in liquid bridges in zero-gravity conditions is investigated by numerical solutions of the three-dimensional and time-dependent flow-field equations. A single region (continuum) formulation based on the enthalpy method is adopted to model the phase-change problem. This paper analyzes the influence of the azimuthally asymmetric and steady first bifurcation of the Marangoni flow on the shape of the solid/melt interface during the crystal growth process. The numerical results show that this interface is distorted in the azimuthal direction. The distortion is related to the sinusoidal three-dimensional temperature disturbances due to the instability of the Marangoni flow. The three-dimensional flow field organization, related to the wave number, changes during the solidification process; this behavior is explained according to the variation of the aspect ratio of the solidifying liquid bridge. A correlation law is found for the azimuthal wave number of the instability as function of the melt zone aspect ratio.     

Measurement of Small One-Bond Proton–Carbon Residual Dipolar Coupling Constants in Partially Oriented C Natural Abundance Oligosaccharide Samples: Analysis of Heteronuclear JCH-Modulated Spectra with the BIRD Inversion Pulse

Two 2D J-modulated HSQC-based experiments were designed for precise determination of small residual dipolar one-bond carbon–proton coupling constants in ¹³C natural abundance carbohydrates. Crucial to the precision of a few hundredths of Hz achieved by these methods was the use of long modulation intervals and BIRD pulses, which acted as semiselective inversion pulses. The BIRD pulses eliminated effective evolution of all but ¹J_CH couplings, resulting in signal modulation that can be described by simple modulation functions. A thorough analysis of such modulation functions for a typical four-spin carbohydrate spin system was performed for both experiments. The results showed that the evolution of the ¹H–¹H and long-range ¹H–¹³C couplings during the BIRD pulses did not necessitate the introduction of more complicated modulation functions. The effects of pulse imperfections were also inspected. While weakly coupled spin systems can be analyzed by simple fitting of cross peak intensities, in strongly coupled spin systems the evolution of the density matrix needs to be considered in order to analyse data accurately. However, if strong coupling effects are modest the errors in coupling constants determined by the “weak coupling” analysis are of similar magnitudes in oriented and isotropic samples and are partially cancelled during dipolar coupling calculation. Simple criteria have been established as to when the strong coupling treatment needs to be invoked.     

Obtaining molecular and structural information from 13C-14N systems with 13C FIREMAT experiments

The effect of dipolar coupling to 14N on 13C FIREMAT (five pi replicated magic angle turning) experiments is investigated. A method is developed for fitting the 13C FIREMAT FID employing the full theory to extract the 13C-14N dipolar and 13C chemical shift tensor information. The analysis requires prior knowledge of the electric field gradient (EFG) tensor at the 14N nucleus. In order to validate the method the analysis is done for the amino acids alpha-glycine, gamma-glycine, l-alanine, l-asparagine, and l-histidine on FIREMAT FIDs recorded at 13C frequencies of 50 and 100 MHz. The dipolar and chemical shift data obtained with this analysis are in very good agreement with the previous single-crystal 13C NMR results and neutron diffraction data on alpha-glycine, l-alanine, and l-asparagine. The values for gamma-glycine and l-histidine obtained with this new method are reported for the first time. The uncertainties in the EFG tensor on the resultant 13C chemical shift and dipolar tensor values are assessed.