Protonation and conformational dynamics of GFP mutants by two-photon excitation fluorescence correlation spectroscopy

GFP mutants are known to display fluorescence flickering, a process that occurs in a wide time range. Because serine 65, threonine 203, glutamate 222, and histidine 148 have been indicated as key residues in determining the GFP fluorescence photodynamics, we have focused here on the role of histidine 148 and glutamate 222 by studying the fluorescence dynamics of GFPmut2 (S65A, V68L, and S72A GFP) and its H148G (Mut2G) and E222Q (Mut2Q) mutants. Two relaxation components are found in the fluorescence autocorrelation functions of GFPmut2: a 10-100 micros pH-dependent component and a 100-500 micros laser-power-dependent component. The comparison of these three mutants shows that the mutation of histidine 148 to glycine induces a 3-fold increase in the protonation rate, thereby indicating that the protonation-deprotonation of the chromophore occurs via a proton exchange with the solution mediated by the histidine 148 residue. The power-dependent but pH-independent relaxation mode, which is not affected by the E222Q and H148G mutations, is due to an excited-state process that is probably related to conformational rearrangements of the chromophore after the photoexcitation, more than to the chromophore excited-state proton transfer.     

Enhancement of the fluorescence of the blue fluorescent proteins by high pressure or low temperature

Green fluorescent proteins bearing the Y66H mutation exhibit strongly blue-shifted fluorescence excitation and emission spectra. However, these blue fluorescent proteins (BFPs) have lower quantum yields of fluorescence (Phi(f) approximately 0.20), which is believed to stem from the increased conformational freedom of the smaller chromophore. We demonstrate that suppression of chromophore mobility by increasing hydrostatic pressure or by decreasing temperature can enhance the fluorescence quantum yield of these proteins without significantly affecting their absorption properties or the shape of the fluorescence spectra. Analysis of the fluorescence lifetimes in the picosecond and nanosecond regimes reveals that the enhancement of the fluorescence quantum yield is due to the inhibition of fast quenching processes. Temperature-dependent fluorescence measurements reveal two barriers ( approximately 19 and 3 kJ/mol, respectively) for the transition into nonfluorescing states. These steps are probably linked with dissociation of the hydrogen bond between the chromophore and His148 or an intervening water molecule and to the barrier for chromophore twisting in the excited state, respectively. The chromophore's hydrogen-bond equilibrium at room temperature is dominated by entropic effects, while below approximately 200 K the balance is enthalpy-driven.     

An alternate proton acceptor for excited-state proton transfer in green fluorescent protein: rewiring GFP

The neutral form of the chromophore in wild-type green fluorescent protein (wtGFP) undergoes excited-state proton transfer (ESPT) upon excitation, resulting in characteristic green (508 nm) fluorescence. This ESPT reaction involves a proton relay from the phenol hydroxyl of the chromophore to the ionized side chain of E222, and results in formation of the anionic chromophore in a protein environment optimized for the neutral species (the I* state). Reorientation or replacement of E222, as occurs in the S65T and E222Q GFP mutants, disables the ESPT reaction and results in loss of green emission following excitation of the neutral chromophore. Previously, it has been shown that the introduction of a second mutation (H148D) into S65T GFP allows the recovery of green emission, implying that ESPT is again possible. A similar recovery of green fluorescence is also observed for the E222Q/H148D mutant, suggesting that D148 is the proton acceptor for the ESPT reaction in both double mutants. The mechanism of fluorescence emission following excitation of the neutral chromophore in S65T/H148D and E222Q/H148D has been explored through the use of steady state and ultrafast time-resolved fluorescence and vibrational spectroscopy. The data are contrasted with those of the single mutant S65T GFP. Time-resolved fluorescence studies indicate very rapid (< 1 ps) formation of I* in the double mutants, followed by vibrational cooling on the picosecond time scale. The time-resolved IR difference spectra are markedly different to those of wtGFP or its anionic mutants. In particular, no spectral signatures are apparent in the picosecond IR difference spectra that would correspond to alteration in the ionization state of D148, leading to the proposal that a low-barrier hydrogen bond (LBHB) is present between the phenol hydroxyl of the chromophore and the side chain of D148, with different potential energy surfaces for the ground and excited states. This model is consistent with recent high-resolution structural data in which the distance between the donor and acceptor oxygen atoms is < or = 2.4 A. Importantly, these studies indicate that the hydrogen-bond network in wtGFP can be replaced by a single residue, an observation which, when fully explored, will add to our understanding of the various requirements for proton-transfer reactions within proteins.     

Theoretical Computer‐Aided Mutagenic Study on the Triple Green Fluorescent Protein Mutant S65T/H148D/Y145F

Green fluorescent protein (GFP) mutant S65T/H148D has been proposed to host a photocycle that involves an excited‐state proton transfer between the chromophore (Cro) and the Asp148 residue and takes place in less than 50 fs without a measurable kinetic isotope effect. It has been suggested that the interaction between the unsuspected Tyr145 residue and the chromophore is needed for the ultrafast sub‐50 fs rise in fluorescence. To verify this, we have performed a computer‐aided mutagenic study to introduce the additional mutation Y145F, which eliminates this interaction. By means of QM/MM molecular dynamics simulations and time‐dependent density functional theory studies, we have assessed the importance of the Cro–Tyr145 interaction and the solvation of Asp148 and shown that in the triple mutant S65T/H148D/Y145F a significant loss in the ultrafast rise of the Stokes‐shifted fluorescence should be expected.     

TIME-RESOLVED FLUORESCENCE OF NITROBENZOXADIAZOLE-AMINOHEXANOIC ACID: EFFECT OF INTERMOLECULAR HYDROGEN-BONDING ON NON-RADIATIVE DECAY

The fluorescence kinetics of the nitrobenzoxadiazole (NBD) chromophore were studied at low concentrations in solvents with varying polarity and hydrogen-bonding donor strength. The emission decay was essentially single exponential in all solvents studied. While the absorption and fluorescence solvatochromism is determined largely by the solvent polarity, the S1 state decay kinetics are strongly modulated by the solvent H-bonding capacity. The NBD emission lifetime, generally approximately 7-10 ns in the aprotic solvents, is reduced to 0.933 ns in water. The solvent deuterium isotope effect on the fluorescence decay is substantial in D2O and in methanol-d4, but is insignificant in DMSO-d6. These results are consistent with acceleration of S1----S0 internal conversion through an accepting vibrational mode created by intermolecular hydrogen-bonding of the NBD chromophore to an H atom-donating solvent. This work bears on the practically of using NBD as a fluorophore in assays for estrogen and progesterone receptors.     

pH and thermo responsive aliphatic tertiary amine chromophore hyperbranched poly(amino ether ester)s from oxa-Michael addition polymerization

In this research, we developed a novel and facile strategy to prepare aliphatic tertiary amine chromophore hyperbranched poly(amino ether ester)s with pH and thermo responsiveness via phosphazene base (t-BuP₂) catalyzed oxa-Michael addition polymerization of triethanolamine with ethylene glycol diacrylate at room temperature. UV–vis and fluorescence analyses results showed that the tertiary amine at branching point for hyperbranched poly(amino ether ester)s is very important to retain strong blue fluorescence of tertiary amine chromophore. Moreover, the hyperbranched poly(amino ether ester)s exhibit an aggregation caused quenching (ACQ) fluorescence, solvent induced red-shifted emission, molecular weight, and temperature dependent emission characters. More interestingly, the hyperbranched poly(amino ether ester)s show extreme acid induced quenching fluorescence phenomenon, and also display good water solubility, specific recognition of Fe³⁺ ion, low cytotoxicity, and bright cell imaging, which could serve as a microenvironment-responding fluorescent probe for application in chemical sensing, cell imaging, drug delivery, or disease diagnostics. This research provides a versatile method for the preparation of stimuli-responsive aliphatic tertiary amine chromophore polymers, and supplies ideas for researchers to explore other unconventional fluorescent polymers for application.     

Kinetics of switchable proton escape from a proton-wire within green fluorescence protein

The emission from the acidic form of the green fluorescence protein (GFP) changes with increasing time and temperature from t-1/2 to t-3/2 asymptotics. It is shown that a model of proton diffusion along a one-dimensional hydrogen-bond network within the protein, with a switch (Thr203) allowing for proton escape, explains the data quantitatively. From a comparison of the model with experiment, we obtain the rate parameters for proton dissociation from the chromophore (showing an inverse temperature effect), the ratio of the proton association constant squared to its diffusion constant (exhibiting no temperature effect), and the time constant for switch opening (with a significant Arrhenius dependence). Thus, proton dissociation has a small negative activation energy (assigned to a complex of the anionic chromophore with H3O+), whereas the switch has a large positive activation energy (assigned to Thr203 side-chain rotation). Proton migration is possibly the outcome of the concerted motion of several protons within GFP.     

Study of the absorption and emission spectroscopy of "A-B" type photosensitive compounds including two-photon chromophore and benzophenone moiety

"A-B" type photosensitive compounds including two-photon chromophore and benzophenone moiety have been designed, synthesized and characterized. The UV-vis absorption and fluorescence emission of the compounds have been extensively studied in various solvents. The results show that the absorption of "A-B" type compounds displays obvious double absorption bands, one of which at short-wavelength is related to the benzophenone moiety, the other at long-wavelength is mainly contributed by chromophore. The emission of "A-B" type compounds at 500-700nm shows an "unexpected" blue-shift comparing with that of the sole chromophore. The photosensitive compounds with amino group display strong emission in apolar solvents and have a low fluorescence quantum yields in polar solvents. In contrast, the compounds without amino group exhibit strong fluorescence emission in polar solvents, and low fluorescence quantum yields in apolar solvents. The fluorescence quantum yields of "A-B" type compounds are higher than those of the sole chromophore. The discoveries suggest that charge redistribution induced by the introduction of benzophenone moiety plays a key role on the absorption and emission spectroscopy.     

Ultrafast relaxation dynamics of a biologically relevant probe dansyl at the micellar surface

We report picosecond-resolved measurement of the fluorescence of a well-known biologically relevant probe, dansyl chromophore at the surface of a cationic micelle (cetyltrimethylammonium bromide, CTAB). The dansyl chromophore has environmentally sensitive fluorescence quantum yields and emission maxima, along with large Stokes shift. In order to study the solvation dynamics of the micellar environment, we measured the fluorescence of dansyl chromophore attached to the micellar surface. The fluorescence transients were observed to decay (with time constant approximately 350 ps) in the blue end and rise with similar timescale in the red end, indicative of solvation dynamics of the environment. The solvation correlation function is measured to decay with time constant 338 ps, which is much slower than that of ordinary bulk water. Time-resolved anisotropy of the dansyl chromophore shows a bi-exponential decay with time constants 413 ps (23%) and 1.3 ns (77%), which is considerably slower than that in free solvents revealing the rigidity of the dansyl-micelle complex. Time-resolved area-normalized emission spectroscopic (TRANES) analysis of the time dependent emission spectra of the dansyl chromophore in the micellar environment shows an isoemissive point at 21066 cm-1. This indicates the fluorescence of the chromophore contains emission from two kinds of excited states namely locally excited state (prior to charge transfer) and charge transfer state. The nature of the solvation dynamics in the micellar environments is therefore explored from the time-resolved anisotropy measurement coupled with the TRANES analysis of the fluorescence transients. The time scale of the solvation is important for the mechanism of molecular recognition.     

Ultrafast dynamics in multibranched structures with enhanced two-photon absorption

The understanding of the mechanism of the enhanced two-photon absorption (TPA) in multibranched chromophore systems is of importance to the design of materials with the large TPA cross-sections and for future applications. In this communication, the mechanism of enhanced TPA properties is investigated. For a dendritic model system, the excited-state dynamics for both population (T1-process) and phase relaxation (T2-process) processes involved are investigated by a combination of time-resolved spectroscopic techniques. The results of time-resolved fluorescence anisotropy are compared with previous results obtained from other branched chromophore systems. It is found that the PRL-701 trimer system, which possesses the large enhancement of two-photon absorption cross-section, gives a faster anisotropy decay (fluorescence upconversion and transient absorption), a longer population relaxation time (fluorescence lifetime), and a weaker coupling to the solvent (a larger photon echo peak shift initial value). New strategies for rational design of large TPA materials can be achieved based on a better understanding of the mechanism of the enhancement.     

Time-Resolved Emission Spectra of Green Fluorescent Protein

The time-resolved emission spectra of wild-type green fluorescent protein (wtGFP) and the T203V GFP mutant have been recorded with picosecond time resolution, allowing the separate characterization of the two spectral components associated with the neutral and anionic forms of the GFP chromophore. Significantly, neither component shifts as a function of time. It is suggested that the absence of spectral shift is a result of highly restricted movement of the protein residues in the vicinity of the chromophore. The shapes of the separated spectra are discussed and their relative ratio analyzed in a steady-state analysis.     

Development of a quinoxaline-based fluorescent probe for quantitative estimation of protein binding site polarity

The compound 2-[(1E)-2-(1H-pyrrol-2-yl)ethenyl]-quinoxaline (PQX) is a promising fluorescent chromophore for the estimation of protein binding site polarity, due to its full-color solvatochromic fluorescence. A linear relationship was obtained between the peak emission wavenumber and E(T)(N) (normalized solvent polarity). The BSA binding site polarity was estimated from the solvatochromic plot.     

Concerted Asynchronous Hula‐Twist Photoisomerization in the S65T/H148D Mutant of Green Fluorescent Protein

Fluorescence emission of wild‐type green fluorescent protein (GFP) is lost in the S65T mutant, but partly recovered in the S65T/H148D double mutant. These experimental findings are rationalized by a combined quantum mechanics/molecular mechanics (QM/MM) study at the QM(CASPT2//CASSCF)/AMBER level. A barrierless excited‐state proton transfer, which is exclusively driven by the Asp148 residue introduced in the double mutant, is responsible for the ultrafast formation of the anionic fluorescent state, which can be deactivated through a concerted asynchronous hula‐twist photoisomerization. This causes the lower fluorescence quantum yield in S65T/H148D compared to wild‐type GFP. Hydrogen out‐of‐plane motion plays an important role in the deactivation of the S65T/H148D fluorescent state.     

Nonexponential Fluorescence Decay of 7-Azatryptophan Induced in a Peptide Environment

7-Azatryptophan is an alternative to tryptophan as an optical probe of protein structure and dynamics. 7-Azatryptophan is synthetically incorporated into an octapeptide (NAc-Lys-Ala-Cys-Pro-7-azatryptophan-Asn-Cys-Asp-NH₂) that mimics the active site of potato chymotrypsin inhibitor II, which is known to be a strong inhibitor of α-chymotrypsin. The synthetic octapeptide retains some of this inhibitory activity. This is the first compound containing the 7-azaindole chromophore to display a nonexponential fluorescence decay (well fit to two exponentials) in water when fluorescence is collected over the entire emission band. The effect of external quenchers on the fluorescence decay is monitored and seen to differ markedly for the two components. These results are discussed in terms of the solvation of the 7-azaindole chromophore itself, which promotes or impedes excited-state tautomerization. The fluorescence quenching of free indole and 7-azaindole are compared. The fluorescence quenching of octapeptides containing both chromophores is also compared. It is the thesis of this article that the nonexponential fluorescence decay of the 7-azatryptophan-containing octapeptide is a consequence of excited-state tautomerization of the 7-azaindole chromophore. This tautomerization is suggested to be promoted by solvent reorganization induced by the peptide backbone or by direct interactions of the 7-azaindole with neighboring amino acid side chains.     

Fluorescence properties of recombinant tropomyosin containing tryptophan, 5-hydroxytryptophan and 7-azatryptophan

Tropomyosin mutants containing either tryptophan (122W), 5-hydroxytryptophan (5OH122W) or 7-azatryptophan (7N122W) have been expressed in Escherichia coli and their fluorescence properties studied. The fluorescent amino acids were located at position 122 of the tropomyosin primary sequence, corresponding to a solvent-exposed position c of the coiled-coil heptapeptide repeat. The emission spectrum of the probe in each mutant is blue-shifted slightly with respect to that of the probe in water. The fluorescence anisotropy decays are single exponential, with a time constant of 2-3 ns while the fluorescence lifetimes of the probes incorporated into the proteins, in water, are nonexponential. Because tryptophan in water has an intrinsic nonexponential fluorescence decay, it is not surprising that the fluorescence decay of 122W is well described by a triple exponential. The fluorescence decays in water of the nonnatural amino acids 5-hydroxytryptophan and 7-azatryptophan (when emission is collected from the entire band) are single exponential. Incorporation into tropomyosin induces triple-exponential fluorescence decay in 5-hydroxytryptophan and double-exponential fluorescence decay in 7-azatryptophan. The range of lifetimes observed for 5-hydroxyindole and 5-hydroxytryptophan at high pH and in the nonaqueous solvents were used as a base with which to interpret the lifetimes observed for the 5OH122W and indicate that the chromophore exists in several solvent environments in both its protonated and unprotonated forms in 5OH122W.     

Synthesis and property of solvatochromic fluorophore based on D-π-A molecular system: 2-{[3-Cyano-4-(N-ethyl-N-(2-hydroxyethyl)amino)styryl]-5,5-dimethylfuran-2(5H)-ylidene}malononitrile dye

2-{[3-Cyano-4-(N-ethyl-N-(2-hydroxyethyl)amino)styryl]-5,5-dimethylfuran-2(5H)-ylidene}malononitrile styryl dye was prepared by the condensation of 4-[(2-hydroxy-ethyl)-methyl-amino]-benzaldehyde (donor moiety) with 2-cyanomethylene-3-cyano-4,5,5-trimethyl-2,5-dihydrofuran (acceptor moiety). The corresponding design, synthesis and solvatochromic characteristics of the intramolecular charge-transfer (ICT) dye chromophore were discussed and determined. Optical properties such as absorption and fluorescence emission spectra were monitored in several solvent media with different polarity. In this determination, the prepared dye chromophore showed positive solvatochromism effect and the resulting solvatochromic characteristics were studied with semiempirical calculations. The energy potentials of this dye chromophore such as HOMO and LUMO values were calculated by computational simulation approaches using Material Studio 4.3. Furthermore, the functions as a molecular switching sensor with pH stimulation of alkali–acid addition were determined in DMSO, which was operated by deprotonation/protonation effects based on intramolecular charge-transfer system.     

Photophysical properties of octupolar chromophore based on triazine core and fluorene divinylene conjugated bridge

A novel octupolar chromophore with 1,3,5-triazine as core,2,7-divinylene-9,9-dimethylfluorene as extendedπ-conjugated bridge,triarylamine as the electron-donating end-groups was successfully synthesized and characterized.Their linear photophysical and two-photon absorption(TPA) properties were investigated by UV absorption,excited fluorescence(SPEF) spectra and nonlinear transmission method,respectively.The absorption cut-off of the chromophore is below 520 nm and it has stronger fluorescence emission in a nonpolar solvent.In addition,the chromophore exhibits larger TPA cross-section(226.0 GM) in the femtosecond regime at 800 nm.     

LIGHT-INDUCED EFFECTS ON A FLAVOPROTEIN, D-AMINO-ACID OXIDASE

Abstract— Upon irradiation of D-amino-acid oxidase-benzoate complex with monochromatic light, an increase is observed in fluorescence emission and in transient absorption, whilst no variation is detected in optical absorption. The phenomenon is discussed in terms of a flavin-adenine-dinucleotide release from the apoprotein, possibly followed by chromophore photodegradation.     

New Ru(II) chromophores with extended excited-state lifetimes

We describe the synthesis, electrochemical, and photophysical properties of two new luminescent Ru(II) diimine complexes covalently attached to one and three 4-piperidinyl-1,8-naphthalimide (PNI) chromophores, [Ru(bpy)(2)(PNI-phen)](PF(6))(2) and [Ru(PNI-phen)(3)](PF(6))(2), respectively. These compounds represent a new class of visible light-harvesting Ru(II) chromophores that exhibit greatly enhanced room-temperature metal-to-ligand charge transfer (MLCT) emission lifetimes as a result of intervening intraligand triplet states ((3)IL) present on the pendant naphthalimide chromophore(s). In both Ru(II) complexes, the intense singlet fluorescence of the pendant PNI chromophore(s) is nearly quantitatively quenched and was found to sensitize the MLCT-based photoluminescence. Excitation into either the (1)IL or (1)MLCT absorption bands results in the formation of both (3)MLCT and (3)IL excited states, conveniently monitored by transient absorption and fluorescence spectroscopy. The relative energy ordering of these triplet states was determined using time-resolved emission spectra at 77 K in an EtOH/MeOH glass where dual emission from both Ru(II) complexes was observed. Here, the shorter-lived higher energy emission has a spectral profile consistent with that typically observed from (3)MLCT excited states, whereas the millisecond lifetime lower energy band was attributed to (3)IL phosphorescence of the PNI chromophore. At room temperature the data are consistent with an excited-state equilibrium between the higher energy (3)MLCT states and the lower energy (3)PNI states. Both complexes display MLCT-based emission with room-temperature lifetimes that range from 16 to 115 micros depending upon solvent and the number of PNI chromophores present. At 77 K it is apparent that the two triplet states are no longer in thermal equilibrium and independently decay to the ground state.     

Extreme fluorescence sensitivity of some aniline derivatives to aqueous and nonaqueous environments: mechanistic study and its implication as a fluorescent probe

Effects of solvent water on the photophysical properties of a series of meta- and para-substituted anilines have been investigated by means of time-resolved fluorescence, transient absorption, and photoacoustic measurements. Some aniline derivatives exhibit extremely short fluorescence lifetime (tau(f)) and small quantum yield (Phi(f)) in water (e.g., tau(f) = 45 ps and Phi(f) = 0.0019 for m-cyanoaniline (m-ANCN) in H(2)O), which is in marked contrast with their much larger values in nonaqueous solvents (tau(f) = 7.3 ns and Phi(f) = 0.14 for m-ANCN in acetonitrile). Photoacoustic and transient absorption measurements show that the remarkable fluorescence quenching of m-ANCN in water is attributed almost exclusively to fast internal conversion. The lifetime measurements of m-ANCN in H(2)O/acetonitrile binary solvent mixtures reveal that the quenching is related to variation of hydrogen-bonding interactions between the amino group and water molecules and the conformational change of the amino group upon electronic excitation. Similar fluorescence quenching due to solvent water is also found for N-alkylated m-ANCNs. The drastic differences in the fluorescence intensity and lifetime of m-ANCNs under hydrophobic and hydrophilic environments and also the large solvent polarity dependence of the fluorescence band position suggest the possibility that they can be utilized as fluorescent probes for investigating the microenvironment of biological systems. In suspensions of human serum albumin (HSA) in water, remarkable enhancement of the fluorescence intensity and lifetime is observed for m-ANCN and its N-alkylated derivatives, demonstrating that m-ANCNs can be a candidate for novel fluorescent probe with small molecular size.