Nanopatterning and nanocharge writing in layer-by-layer quinquethiophene/phthalocyanine ultrathin films

Nanometer-scale patterning and charging in layer-by-layer (LbL) ultrathin films of quinquethiophene (5TN)/phthalocyanine (CuPS) provides a novel write-read device using a standard current-sensing atomic force microscopy (CS-AFM). The AFM height images showed dented or raised morphological features that could be selectively manipulated by changing the direction of the bias voltages. The conductivity was repeatedly changed between a conductive and insulating state, originating from an electrochemical charging-discharging effect. This was attributed to electrochemical ion transport and the residual mobile ions present in LbL films. Finally, the nanocharge pattern was written by CS-AFM and read out in a conductivity map image.     

PM-IRRAS mapping of ultrathin molecular films with high spatial resolution

Polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS) is a very sensitive technique to characterize the degree of molecular ordering in thin films on metallic surfaces. This is the first report of the coupling of a PM-IRRAS microscope to a free electron laser (FEL), a light source of highest brilliance. Some FELs emit in the infrared region and permit the mapping of molecular properties at high lateral resolution. We studied the molecular orientation of octadecanephosphonic acid (OPA) attached to a gold surface with microstructured aluminum oxide islands on the gold. The spatial resolution achieved is 12 μm which corresponds to the diffraction limit of the infrared light used in this study. This is a substantial improvement compared to previous studies using a PM-IRRA accessory together with a commercial Fourier transform infrared spectrometer, where the lateral resolution is noise-limited rather than diffraction-limited. The spectral maps reveal that OPA is preferably attached to the aluminum oxide islands via the bidentate binding mode whereas the tridentate mode is dominating in case of OPA attached to the gold areas.     

Alignment of liquid crystals on ultrathin organized molecular films

Liquid crystal (LC) alignment techniques based on various kinds of ultrathin organized molecular films are reviewed. The mechanisms of LC alignment on the organized films are discussed. For the homeotropic alignment of LCs the main anchoring mechanism is due to the dipole–dipole interaction between polar groups of an aligning agent and LC molecules while the homogeneous alignment is mainly attributed to the orientation of polymer chains or polymer aggregates. An experimental system for an anchoring transition induced by a conformation change of aligning molecules is introduced. Finally the AFM experimental observations on the rubbed polymer films and its mechanisms are summarized.     

Gas sensing mechanism in chemiresistive cobalt and metal-free phthalocyanine thin films

The gas sensing behaviors of cobalt phthalocyanine (CoPc) and metal-free phthalocyanine (H2Pc) thin films were investigated with respect to analyte basicity. Chemiresistive sensors were fabricated by deposition of 50 nm thick films on interdigitated gold electrodes via organic molecular beam epitaxy (OMBE). Time-dependent current responses of the films were measured at constant voltage during exposure to analyte vapor doses. The analytes spanned a range of electron donor and hydrogen-bonding strengths. It was found that, when the analyte exceeded a critical base strength, the device responses for CoPc correlated with Lewis basicity, and device responses for H2Pc correlated with hydrogen-bond basicity. This suggests that the analyte-phthalocyanine interaction is dominated by binding to the central cavity of the phthalocyanine with analyte coordination strength governing CoPc sensor responses and analyte hydrogen-bonding ability governing H2Pc sensor responses. The interactions between the phthalocyanine films and analytes were found to follow first-order kinetics. The influence of O2 on the film response was found to significantly affect sensor response and recovery. The increase of resistance generally observed for analyte binding can be attributed to hole destruction in the semiconductor film by oxygen displacement, as well as hole trapping by electron donor ligands.     

Chloroaluminum phthalocyanine thin films: chemical reaction and molecular orientation

The chemical transformation of the polar chloroaluminum phthalocyanine, AlClPc, to μ-(oxo)bis(phthalocyaninato)aluminum(III), (PcAl)₂O, in thin films on indium tin oxide is studied and its influence on the molecular orientation is discussed. The studies were conducted using complementary spectroscopic techniques: Raman spectroscopy, X-ray photoelectron spectroscopy, and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. In addition, density functional theory calculations were performed in order to identify specific vibrations and to monitor the product formation. The thin films of AlClPc were annealed in controlled environmental conditions to obtain (PcAl)₂O. It is shown that the chemical transformation in the thin films can proceed only in the presence of water. The influence of the reaction and the annealing on the molecular orientation was studied with Raman spectroscopy and NEXAFS spectroscopy in total electron yield and partial electron yield modes. The comparison of the results obtained from these techniques allows the determination of the molecular orientation of the film as a function of the probing depth.

Covalent molecular assembly of multilayer dendrimer ultrathin films in supercritical medium

Ultrathin films containing dendrimers are fabricated on amine- and anhydride-derivatized silicon dioxide surface through alternate layer-by-layer (LbL) assembly of pyromellitic dianhydride (PMDA) and poly(amidoamine) (PAMAM) dendrimer in supercritical carbon dioxide (SCCO2) with interlayer linkage established by covalent bonds. X-ray photoelectron and UV-visible absorption spectroscopies, atomic force microscopy (AFM), and ellipsometry were employed to study the interfacial chemistry, growth, morphology, and thickness of the assembled film. XPS analysis suggests that the PMDA/PAMAM interlayer covalent bond is established to completion, and functional surfaces for immobilization of the next layer are available after deposition of each layer. UV-visible absorption and ellipsometry revealed layer-by-layer growth of the film. The functional property film as a porous matrix was manifested in the reduction of the refractive index upon introduction of the dendrimer.     

Tribological properties of nanoparticle-laden ultrathin films formed by covalent molecular assembly

The tribological properties of ultrathin films containing nanoparticles encapsulated in immobilized dendrimers are investigated. The films were formed by covalent molecular assembly in supercritical carbon dioxide, and the Au nanoparticles were formed in aqueous solution. End-capping of the terminal amine groups of the dendrimer by fluorinated species resulted in a reduction in the size of the nanoparticles formed. The resulting film structure displayed a lower coefficient of friction when the nanoparticles were formed after fluorination. The observed improvement in the tribological properties is attributed to the reduction in agglomeration of the nanoparticles due to the presence of the fluorine moieties.     

Complexes of iron tetrasulfonated phthalocyanine with liver apocatalase

Artificial catalase has been prepared with Fe(III) tetrasulfonated phthalocyanine in place of heme and its structure and properties have been investigated by CD and difference spectroscopy, electrophoresis and catalase activity determination.     

Calix[4]phyrin based redox architectures: towards new molecular tools for electrochemical sensing

New redox active molecular macrocyclic architectures characterized by a direct connection between dipyrrin, tripyrrin and ferrocenyl fragments have been synthesized and characterized. Contrarily to fully conjugated porphyrins, in which four pyrrole moieties contribute to the overall aromatic pi-electronic system and behave as a unique electroactive species, calixphyrins can be regarded as an assembly of independent redox active pyrrole and conjugated oligopyrrole fragments linked through sp(3) hybridized meso carbon atoms. The disruption of the conjugation pathway not only multiplies the number of redox centres throughout the molecule but also leads to a large variety of molecular architectures with specific physico-chemical properties. These novel ferrocene containing hybrid macrocycles exhibit especially attractive electronic and structural features suited for use as molecular sensing tools. An efficient voltammetric sensing of exogenic electron rich anionic species could especially be performed using a metallo-calix[4]phyrin-(1.1.1.1) through the displacement of the labile axial binding site, the perturbation of the Fc(0/+) redox couple being directly related to complexed species features.     

Application of direct covalent molecular assembly in the fabrication of polyimide ultrathin films

Ultrathin films were fabricated using synthesized hydroxyl polyimide (HPI) in a layer-by-layer fashion on amine-terminated substrates of silicon, quartz, and gold. The interlayer linkages were established by using terephthaloyl chloride as a bridging agent to form ester groups between HPI layers. Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, UV-vis absorption spectroscopy, atomic force microscopy, ellipsometry, and electrochemical impedance spectroscopy were employed to study the interfacial chemistry, stepwise growth, morphology, thickness, optical property, and insulation behavior of the assembled film. The films show excellent stability and strength, which can be attributed to the covalent interlayer linkage.     

Stability and disintegration of ultrathin heptane films in water: molecular dynamics simulations

Molecular dynamics simulations of ultrathin heptane films (less than 5 nm in thickness) in water were conducted to study their stability and disintegration behavior. The density distributions of heptane and water molecules across the film were determined for different equilibrium film thicknesses ranging from 1.5 to 4 nm. The potential energy of the system was computed as a function of the heptane number fraction, and the results were employed to determine the excess energy of mixing of heptane in water. The diffusion coefficients of heptane and water obtained from the MD simulations were also compared with experimental data. A good agreement was found between the heptane self-diffusivity obtained from the MD simulations and its literature reported value. Following an analysis of the equilibrium properties of the heptane films and associated structures, we performed simulations where the shapes of the heptane films were initially perturbed. Different perturbations of these ultrathin films led to formation of various associated structures, including cylindrical rodlike heptane droplets, films with holes, and intact films. The different shapes are formed in systems with the same heptane/water composition. An analysis of this behavior is presented showing the possibility of multiple associated structures with similar total energy in these highly confined systems.     

Advances in nucleic acid architectures for electrochemical sensing

Nucleic acid–based electrochemical sensors are ideally suited to the detection of molecular targets for which enzymatic detection or direct electrochemical oxidation – reduction reactions are not possible. Moreover, the versatility of nucleic acids in their ability to bind a great variety of target types, from small molecules to single-entity mesoscopic targets, makes them attractive receptors for the development of electrochemical biosensors. In this brief opinion piece, we discuss field advances from the past two years. We hope the works highlighted here will inspire the community to pursue creative designs enabling the detection of larger and more complex targets with a specific focus on analytical validation and translation into preclinical or clinical applications.     

Covalent molecular assembly of oligoimide ultrathin films in supercritical and liquid solvent media

An ultrathin film of oligoimide has been fabricated on amine-modified substrates of silicon and quartz through alternate layer-by-layer (LBL) assembly of pyromellitic dianhydride (PMDA) and diaminodiphenyl ether (DDE), with interlayer links established by covalent bonds. The assembly was formed in supercritical carbon dioxide (SCCO2) and in solution (dimethyl acetamide, DMAc), and the imidization reaction was performed by thermal and chemical methods, in benzene and in the supercritical medium. X-ray photoelectron and UV-visible absorption spectroscopies, atomic force microscopy (AFM), and ellipsometry were employed to study the interfacial chemistry, growth, morphology, and thickness of the assembled film. XPS analysis confirmed the sequential deposition of PMDA and DDE through formation of amic acids. At each deposition step, surface functionalities for the assembly of the next layer were generated. The interfacial chemical reaction was almost complete in the SCF (supercritical fluid) medium, as compared to the conversions observed in conventional assembly. Both the PMDA and DDE molecules were assembled in an organized manner, resulting in uniform surface morphology. Uniform film growth was revealed from the increase of UV absorption intensity and film thickness. The overall growth and quality of the films in SCF medium were greater than that for films formed in DMAc. The results of this novel study show that an environmentally friendly solvent can be used to obtain mechanically robust and thermally stable ultrathin films with little loss of material during the imidization step. In contrast to conventional deposition of the molecular layers that utilizes liquid solvents, use of SCCO(2) avoids solvent effects and posttreatment for solvent removal, while ensuring facile transport during contact.     

Room temperature ppb level Cl2 sensing using sulphonated copper phthalocyanine films

We present room temperature chemiresistive gas sensing characteristics of drop casted sulphonated copper phthalocyanine (CuTsPc) films. It has been demonstrated that these films are highly selective to Cl₂ and the sensitivity in the 5-2000 ppb range varies linearly between 65 and 625%. However, for concentrations ≥2000 ppb, the response becomes irreversible, which is found to be due to the chemical bond formation between Cl₂ and SO₃Na group of CuTsPc films. The X-ray photoelectron spectroscopy (XPS) and Fourier transform infrared (FTIR) data confirms the oxidation of SO₃Na group by Cl₂ gas.     

Self-assembly molecular architectures with novel cyclic dimers

Highly emissive conjugated compounds containing pyridine (or pyrimidine) and cyano ligands have been synthesized by palladium-catalyzed cross-coupling reaction. These ligands readily react with Re(CO)₃(THF)₂Br to form cyclic supramolecules by self-assembly processes. At room temperature these supramolecules are emissive, and the emission is ligand-localized, as evidenced from the Stokes shift and the lifetime data.     

Electrical properties of iron phthalocyanine systems with a mixed valenced central iron atom

Various types of monomeric and polymeric iron phthalocyanines were prepared and treated with atmospheric oxygen. Electrical conductivity tends to increase with polymerization, oxygen inclusion and as the ratio of two valencies shifts towards unity. A pyroelectric effect was noted in the samples, as heating and cooling in the absence of external applied voltage gave rise to significant currents. Chloroferric phthalocyanine with Fe in higher oxidation state has been reported with Cl compensating the extra valence. Use of FeCl₃ instead of FeSO₄ in synthesis does not necessarily give an end product with Fe in (III) oxidation states.     

Mechanically interlocked molecular architectures functionalised with fullerenes

The combination of fullerenes and mechanically interlocked molecular architectures has opened up a new field of research. A selection of representative examples of mechanically interlocked molecules functionalised with fullerenes are discussed here.     

Pyrazine as a building block for molecular architectures with PtII

A series of pyrazine (pz) complexes containing cis-(NH(3))(2)Pt(II), (tmeda)Pt(II) (tmeda = N,N,N',N'-tetramethylethylenediamine), and trans-(NH(3))(2)Pt(II) entities have been prepared and characterized by X-ray crystallography and/or 1H NMR spectroscopy. In these compounds, the pz ligands act as monodentate (1-3) or bidentate bridging ligands (4-7). Three variants of the latter case are described: a dinuclear complex [Pt(II)]2 (4b), a cyclic tetranuclear [Pt(II)](4) complex (5), and a trinuclear mixed-metal complex [Pt2Ag] (7). Mono- and bidentate binding modes are readily differentiated by 1H NMR spectroscopy, and the assignment of pz protons in the case of monodentate coordination is aided by the observation of (195)Pt satellites. Formation of the open molecular box cis-[{(NH3)2Pt(pz)}4](NO3)8.3.67H2O (5) from cis-(NH3)2Pt(II) and pz follows expectations of the "molecular library approach" for the generation of a cyclic tetramer.