Theoretical surface-enhanced Raman spectra study of substituted benzenes II. Density functional theoretical SERS modelling of o-, m-, and p-methoxybenzonitrile

The SERS modelling of o-, m-, and p-methoxybenzonitrile has been performed following the same methodology that in Part I. Optimized structure obtained from DFT calculations in a B3LYP-LANL2DZ level of calculation shows different tilted positions for the isomers under study. From correlations obtained by comparison of Raman and SERS spectra concerning geometrical parameters, frequency shifting, change in band intensity, and force constants is possible to give insight about the different effect of the metal surface on these molecules and the structural reasons of this behaviour. Frontier orbital analysis gives further information and reveals a ligand to metal charge transfer mechanism for all isomers, as well as its relative importance.     

Density functional theory study of Fourier transform infrared and Raman spectra of 2-amino-5-chloro benzonitrile

The vibrational spectra of 2-amino-5-chloro benzonitrile (ACB) have been obtained by density functional theory (DFT) calculations. Normal coordinate analysis has been carried out to support the vibrational analysis. The results were compared with the experimental values. With the help of scaling procedures, the observed FTIR and FT Raman vibrational frequencies were analysed and compared with the theoretically predicted vibrational spectra. The assignments of bands to various normal modes of the molecules were also carried out.     

Density functional theoretical investigation of the aromatic nature of BN substituted benzene and four ring polyaromatic hydrocarbons

We have studied the topological and local aromaticity of BN-substituted benzene, pyrene, chrysene, triphenylene and tetracene molecules. The nucleus-independent chemical shielding (NICS), harmonic oscillator model of aromaticity (HOMA), para-delocalization index (PDI) and aromatic fluctuation index (FLU) have been calculated to quantify aromaticity in terms of magnetic and structural criteria. We find that charge separations due to the introduction of heteroatoms largely affect both the local and topological aromaticity of these molecules. Our studies show that the presence of any kind of heteroatom in the ring not only reduces the local delocalization in the six membered ring, but also affects strongly the topological aromaticity. In fact, the relative orders of the topological and local aromaticity depend strongly on the position of the heteroatoms in the structure. In general, more ring shared BN containing molecules are less aromatic than the less ring shared BN molecules. In addition our results provide evidence that the structural stability of the molecule is dominated by the σ bond rather than the π bond.     

Signature of nanodiamond in Raman spectra: a density functional theoretical study

Nanocrystalline diamond (NCD) has attracted great attention both experimentally and theoretically in the past few years. The identification of the presence and the amount of NCD in amorphous carbon film has been a challenging issue. Although Raman spectroscopy has become a standard tool for the characterization of various carbon phases, a simple criterion for identifying NCD has not yet been well-established. In the present work, a theoretical study of the Raman spectra of the model compounds of NCD is presented on the basis of the density functional calculations. The reliability of the computational approach has been tested by comparing the predicated Raman spectra of several reference molecules to those obtained experimentally. To show the unique Raman spectrum of a NCD phase, a series of the model compounds of various carbon materials including tetrahedral and hexagonal clusters, and trans-polyacetylene fragments, were considered, and subsequently their Raman spectra below 2000 cm(-1) were calculated and compared with each other. The calculated results indicate that the relatively stronger broad peak at about 480 cm(-1) could be used as the signature of a NCD phase in the sample.     

Effect of silver nanowires on the surface-enhanced Raman spectra (SERS) of the RNA bases

RNA bases have a great importance in the biological and genetics applications. The surface-enhanced Raman scattering (SERS) was used to study the orientation and adsorption structure of RNA bases adsorbed on the surface of silver nanowires (Ag NWs). The Ag NWs were prepared and its UV-vis spectra were recorded. The RNA bases oriented perpendicularly on the surface of Ag NWs, as the coverage area decreases. Consequently, the in-plane bands were enhanced according to the SERS selection rule. Many bands were red shifted due to the chemisorption of RNA bases on the Ag NWs surface. New bands corresponding to the base-surface bond were appeared in the SERS spectra.     

Density functional theory study on surface-enhanced Raman scattering of 4,4′-azopyridine on silver

Surface-enhanced Raman scattering (SERS) of 4,4′-azopyridine (AZPY) on silver foil substrate was measured under 1064 nm excitation lines. Density-functional theory (DFT) methods were used to calculate the structure and vibrational spectra of models such as Ag–AZPY, Ag₄–AZPY and Ag₆–AZPY complexes with B3LYP/6-31++G(d,p)(C,H,N)/Lanl2dz(Ag) basis set. The Raman bands of AZPY were identified on the ground of analog computation of potential energy distribution. The calculated spectra of Ag₄–AZPY and Ag₆–AZPY models were much approximated to the experimental results than that of Ag–AZPY model. The DFT results showed that the angles between two pyridyl rings keep 0° from AZPY to Ag–AZPY, Ag₄–AZPY and Ag₆–AZPY model. The energy gaps between the HOMO and LUMO changed from 363 to 1140 nm for AZPY-Ag complexes according to the DFT results. An conclusion was conceived that chemical enhancement mechanism may play an important role in the SERS of AZPY on silver substrate.     

Variable electronegativity SCF-MO calculations on the electronic structure and spectra of some substituted benzenes I. Monosubstitutions

π-electron SCF-MO theory in its variable electronegativity formalism has been applied to some monosubstituted benzenes. Calculated charge densities and bond orders for the ground and the first excited electronic states are correlated with chemical reactivity and the changes in molecular geometry on electronic excitation. The calculated results for spectra are compared with those obtained using the PPP method and also with the available experimental data.     

Raman and surface-enhanced Raman spectra of chrysin,apigenin and luteolin

The FT-Raman and surface-enhanced Raman (SER) spectra of three flavonoids, namely chrysin, apigenin and luteolin, have been obtained. The SERS spectra were obtained on citrate reduced Ag colloids. Assignments of the experimentally obtained normal vibrational modes were aided by density functional theory (DFT) calculations using the B3LYP functional and the 6-31+G* basis set. Excellent fits were obtained for the observed spectra with little or no scaling. The most intense lines in the three flavonoids SERS spectra are those in the CO stretching region and around 1250 cm^?1. The first ones are often weakened by proximity of the metal surface, whereas the latter are not affected by the Ag. On the other hand, the lines at lower wavenumbers, assigned to in-plane ring deformation, are strongly enhanced by the surface, indicating a perpendicular orientation of the flavonoids on the Ag surface. The spectra of the flavonoids are compared, and a case study of application to detect weld, a mixture of apigenin and luteolin, in a textile is presented.     

Density functional theory and surface-enhanced Raman spectroscopy studies on endocrine-disrupting chemical,dimethyl phthalate

A method to monitor endocrine-disrupting chemical contamination phthalate esters (PAEs) by surface-enhanced Raman scattering (SERS) spectroscopy has been investigated. The molecular structure and assignment of the vibrations of dimethyl phthalate (DMP), forming short chains in PAEs, has been studied by density functional theory (DFT) calculations. The structure of DMP with the dihedral angles of 1C-6C-11C-13O and 4C-5C-18C-20O being 133.78° and −24.00°, respectively, has the lowest energy. Theoretical vibrational frequencies using B3LYP/6-31 + G(d) (after scaling) show excellent agreement with the experimental normal Raman spectrum. In the region 200–1800 cm⁻¹, SERS spectra of DMP were measured using ordered gold nanosubstrates. All except the weak signals in the normal Raman spectrum of DMP were successfully enhanced. These results demonstrate that SERS technology could be developed as a rapid method for screening of DMP.     

Raman and surface-enhanced Raman study of insecticide cyromazine

Surface-enhanced Raman scattering (SERS) spectroscopy is applied to the study of the adsorption of the insecticide cyromazine on Ag colloid. The influence of pH and the aggregation inductors, sodium chloride, potassium nitrate and sodium hydroxide on the adsorption mechanism was investigated. Two different adsorption mechanisms are deduced depending on the experimental conditions: via the N atom bounded to the cyclopropyl (cP) group or through an ionic pairing of protonated amino groups with the chloride adsorbed on the metal. An important contribution of the chemical mechanism was inferred when the interaction with the metal occurs through the N lone pair.     

IR, Raman and SERS spectra of 2-phenoxymethylbenzothiazole

The FT-IR and FT-Raman spectra of 2-phenoxymethylbenzothiazole were recorded and analyzed. The surface enhanced Raman scattering (SERS) spectrum was recorded in a silver colloid. The vibrational wavenumbers of the compound have been computed using the Hartree–Fock/6-31G* basis and compared with the experimental values. The appearance of the Ag–O stretching mode at 237 cm⁻¹ in the SERS spectrum along with theoretically calculated atomic charge density, leads us to suggest that the molecule is adsorbed through the oxygen atom with the molecular plane tilted on the colloidal silver surface. The direction of charge transfer contribution to SERS has been discussed from the frontier orbital theory.     

IR, Raman and SERS spectra of disodium terephthalate

The IR and Raman spectra of disodium terephthalate were recorded and analysed. Surface enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wavenumber of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values. SERS studies suggest a flat orientation of the molecule at the metal surface.     

Absorption and surface-enhanced Raman spectra of silver organosols in ethanol

Colloidal silver, dispersed in ethanol and stabilized by adsorbed polymer, shows enhanced Raman scattering of the chromophore dabsyl (N-4-dimethylaminoazobenzene-4′-sulfonyl)aspartate, DABS ASP, in the presence of excess base. The requirement of the base appears linked to the adsorption of the dabsyl aspartate by interaction with the polymer and/or promotion of growth and aggregation of the silver particles. The latter conditions are indicated by changes in the absorption spectrum of the sol upon addition of base. The enhancement is comparable to that observed earlier for DABS ASP on colloidal silver in aqueous medium.     

The electronic structure of substituted benzenes: ab initio calculations and photoelectron spectra for benzonitrile,the tolunitriles,fluorobenzonitriles, dicyanobenzenes and ethynylbenzene

The photoelectron spectra of the title compounds have been investigated by He(I) and He(II) photoelectron spectroscopy and by ab initio MO calculations. The spectra are assigned in some detail, on the basis of their relationship to the corresponding IP's in benzene, and are compared with those of other substituted benzenes.     

Density functional theory studies on the Raman and IR spectra of meso-tetraphenylporphyrin diacid

The vibrational spectra of meso-tetraphenylporphyrin diacid (H4TPP2+) have been studied with the density functional theory. Raman and IR spectra of H4TPP2+ and its N-deuterated analogue (D4TPP2+) are measured and compared with the computational results. Complete assignments of observed IR and Raman bands were proposed on the bases of calculation results. The DFT calculations reproduce 140 observed fundamentals with the RMS 8.6 cm-1. The computational as well as the experimental results reveal that the saddle-distortion of porphyrin macrocycle for the diacid leads to a significant effect on its vibrational spectra. Especially, several out-of-plane skeletal modes, which were either unobserved or very weak in the Raman spectra of CuTPP and H2TPP, are activated in the Raman spectra of the diacids. In addition, enhancement for the Raman bands of phenyl CC stretching modes were observed and attributed to the conjugation effect of pi-systems of the phenyl and the porphyrinato macrocycles.     

Theoretical studies on the electronic structures and absorption spectra of substituted benzenes with one- and two-dimensional charge transfer character

The electronic structures and absorption spectra of one- and two-dimensional charge transfer (CT) molecules based on para-nitroaniline (pNA) and 1,3-diamino-4,6-dinitro- benzene (DADB) have been studied theoretically via semi-empirical and ab initio methods. It is found that the behaviors of optical absorption are strongly influenced by the dimension of CT. Different from the well-known one-dimensional CT molecule of pNA, which shows one intense absorption related to the π → π^* CT transition, two-dimensional CT molecule of DADB exhibits more absorption peaks associated with various low-lying CT transitions in near ultraviolet range. In addition, the relative orientations of transition dipole moment and ground state dipole moment in one- and two-dimensional charge transfer molecules were also discussed.     

Density functional theoretical study on enantiomerization of 2,2'-biphenol

The S-R enantiomerization processes of 2,2'-biphenol (biphenol) have been investigated using density functional theory (DFT). Five isomers for biphenol were identified: I0, which is the most stable isomer; I1a and I1b, which are formed by a restricted rotation of one OH group; and I2a and I2b, which are formed by a restricted rotation of the two OH groups where a and b denote cis and trans configurations, respectively. Each isomer has R- and S-enantiomers. The energies relative to the most stable isomer I0 are 1.6, 3.3, 5.3, and 5.5 kcal mol(-1) for I1a, I1b, I2a, and I2b, respectively. The direct enantiomerization of I0, in which the phenol-ring rotation is considered to be the reaction coordinate while the OH rotations are frozen, is forbidden because of the repulsion between the two OH groups. The transition states for isomerizations of I0 to other isomers (I1a, I1b, I2a, or I2b) were calculated as well as those for the other direct enantiomerizations except for that of I0. From the viewpoint of the least number of the transition states and their low energy levels, the probable S-R enantiomerization of I0 is expressed as a sequential process of isomerization: I0,S --> I1a,S, a direct enantiomerization induced by one of the two OH rotations, I1a,S --> I1a,R, and another isomerization, I1a,R --> I0,R, that is, I0,S --> I1a,S --> I1a,R --> I0,R as the whole process. This process is effective in quantum control of the enantiomerization of biphenol and can be carried out by a sequence of a pump-dump IR laser-pulse scheme.     

Density functional theory study of the Fourier transform infrared and Raman spectra of Cu(II) bis-acetylacetone

Fourier transform infrared and Fourier transform Raman spectra of Cu(II) bis-acetylacetone have been obtained. The geometry, frequency and intensity of the vibrational bands of this compound and its 1,5-(13)C(2), 3-(13)C, 1,3,5-(13)C(3), 2,4-(13)C(2), (18)O(2) and 2,4-(13)C(2)-(18)O(2) derivatives were obtained by the density functional theory (DFT) with the B3LYP functional and using the 6-31G(*) and 3-21G(*) basis sets. The calculated frequencies are compared with the solid infrared and Raman spectra. All the measured infrared and Raman bands were interpreted in terms of the calculated vibrational modes. The percentage of deviation of the bond lengths and bond angles gives a good picture of the normal modes, and serves as a basis for the assignment of the wavenumbers. Most computed bands are predicted to be at higher wavenumbers than the experimental bands. The calculated geometrical parameters show slight differences compared with the experimental results. These differences can be explained by the different physical state of Cu(II) bis-acetylacetone. The DFT-B3LYP calculations assumed a free molecule in the gas phase. Analysis of the vibrational spectra indicates a strong coupling between the chelated ring modes.