Methyl 1‐(4‐chloro­benzyl)‐2‐(4‐methyl­piperazin‐1‐yl)‐1H‐benz­imidazole‐5‐carboxyl­ate hemihydrate

The title compound, C₂₁H₂₃ClN₄O₂·0.5H₂O, contains two independent mol­ecules in the asymmetric unit. In each mol­ecule the piperazine ring adopts a chair conformation; the deviations of the piperazine N atoms from the best plane through the remaining four C atoms are ?0.678 (3) and 0.662 (3) Å in mol­ecule A, and 0.687 (3) and ?0.700 (3) Å in mol­ecule B. The mol­ecules are linked by two hydrogen bonds of the O—H?N type involving the O atom of the water mol­ecule of crystallization.     

Supramolecular structures of 5‐[3‐(4‐methyl­phenyl)‐ and 5‐[3‐(4‐chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione

2,2‐Di­methyl‐5‐[3‐(4‐methyl­phenyl)‐2‐propenyl­idene]‐1,3‐di­ox­ane‐4,6‐dione, C₁₆H₁₆O₄, crystallizes in the triclinic space group , with two mol­ecules in the asymmetric unit. These mol­ecules and a centrosymmetrically related pair, linked together by weak C—H?O hydrogen bonds, form a tetramer. 5‐[3‐(4‐Chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione, C₁₅H₁₃ClO₄, also crystallizes in the triclinic space group , with one mol­ecule in the asymmetric unit. Centrosymmetrically related mol­ecules are linked together by weak C—H?O hydrogen bonds to form dimers which are further linked by yet another pair of centrosymmetrically related C—H?O hydrogen bonds to form a tube which runs parallel to the a axis.     

4‐(4‐Hydro­xy­benzyl­idene­amino)‐4H‐1,2,4‐triazole hemihydrate

In the title compound, 4‐(4H‐1,2,4‐triazol‐4‐yl­imino­methyl)­phenol hemi­hydrate, C₉H₈N₄O·0.5H₂O or (I)·0.5H₂O, mol­ecules of (I) are arranged as layers running along the b axis through intermolecular O—H?N and C—H?O hydrogen bonds. These layers are stabilized by hydrogen‐bonded water mol­ecules to form three‐dimensional networks.     

3,4‐Di­hydro‐6‐methyl‐3‐β‐d‐ribo­furan­osyl‐4,5′‐cyclo‐9H‐imidazo[1,2‐a]­purin‐9‐one hydrate

In the title compound, C₁₃H₁₃N₅O₄·H₂O (4,5′‐cyclo­wyosine·H₂O), the cyclization forces a syn arrangement of the aglycon with respect to the sugar moiety. The ribo­furan­ose part of the mol­ecule displays a β‐d configuration with an envelope C1′‐endo pucker. The mol­ecules are arranged in columns along the short a axis and are linked to water mol­ecules through O—H?O and O—H?N hydrogen bonds.     

The new chiral ligand 3‐ethoxy‐4‐[(1R,2S)‐(2‐hydroxy‐1,2‐di­phenyl­ethyl)­amino]‐3‐cyclo­butene‐1,2‐dione

The asymmetric unit of C₂₀H₁₉NO₄ contains two mol­ecules with slightly different conformations. In the crystal, the mol­ecules are linked by O—H?O and N—H?O hydrogen bonds [O?O 2.764 (3) and 2.811 (3) Å; N?O 2.907 (3) and 2.968 (3) Å] to form a two‐dimensional network.     

N‐(2‐Amino‐1,6‐di­hydro‐5‐nitro­so‐6‐oxopyrimidin‐4‐yl)‐l‐isoleucine–water (4/1): interplay of molecular and supramolecular structures

In the title compound, 2C₁₀H₁₅N₅O₄·0.5H₂O, there are two independent mol­ecules of the pyrimidinyl­isoleucine in general positions and a water mol­ecule lying on a twofold rotation axis. The bond lengths within the organic moieties demonstrate significant polarization of the electronic structure. Each of the organic mol­ecules participates in 12 intermolecular hydrogen bonds, of O—H?O and N—H?O types, while the water mol­ecule acts as a double donor and as a double acceptor of O—H?O hydrogen bonds. The organic components are linked by the hydrogen bonds into a single three‐dimensional framework, reinforced by the water mol­ecules.     

(+)‐3‐Oxo‐4‐pregnene‐20β‐carboxyl­ic acid: catemeric hydrogen bonding in a steroidal keto acid

The title keto acid, (+)‐23,24‐dinor‐3‐oxo­chol‐4‐en‐22‐oic acid, C₂₂H₃₂O₃, forms carboxyl‐to‐ketone hydrogen‐bonding catemers [O?O = 2.699 (4) Å and O—H?O = 173°], linking mol­ecules screw‐related in b. The four mol­ecules in the cell form two parallel counter‐directional chains, screw‐related in a. Intermolecular C—H?O=C close contacts to different neighboring mol­ecules were found for the ketone and the acid.     

Hydro­gen‐bonded molecular ladders in trans‐1,2‐bis(2‐nitro­anilino)­cyclo­hexane

Crystals of the title compound, C₁₈H₂₀N₄O₄, contain equal numbers of (R,R) and (S,S) mol­ecules, but these are not precise enantiomorphs, neither are they related by crystallographic symmetry; in addition, each mol­ecule exhibits approximate, but not exact, twofold rotational symmetry. There are intramolecular N—H?O hydrogen bonds [N?O 2.609 (4)–2.638 (5) Å; N—H?O 125–132°] and the mol­ecules are linked into molecular ladders by C—H?O hydrogen bonds [C?O 3.306 (6)–3.386 (6) Å; C—H?O 146–160°].     

tert‐Butyl (3S,6R,9R)‐(5‐oxo‐3‐{[1(R)‐phenyl­ethyl]­carbamoyl}‐1,2,3,5,6,7,8,8a‐octa­hydro­indolizin‐6‐yl)­carbamate monohydrate at 95 K

The asymmetric unit of the title compound, C₂₂H₃₁N₃O₄·H₂O, incorporates one water mol­ecule, which is hydrogen bonded to the 3‐oxo O atom of the indolizidinone system. The two rings of the peptidomimetic mol­ecule are trans‐fused, with the six‐membered ring having a slightly distorted half‐chair conformation and the five‐membered ring having a perfect envelope conformation. The structure is stabilized by intermolecular O—H?O interactions between the water and adjacent peptide mol­ecules, and by N—H?O interactions between the peptide mol­ecules, which link the mol­ecules into infinite chains.     

7‐Methoxy‐3‐(salicyl­idene­amino)­coumarin

The title compound, C₁₇H₁₃NO₄, exists as a planar mol­ecule; adjacent mol­ecules are linked by electrostatic C—H?O [C?O = 3.318 (4) and 3.455 (4) Å] interactions into a linear chain.     

2,2′‐Methyl­enebis(3‐hydroxy‐2‐cyclo­hexen‐1‐one)

In the title compound, C₁₃H₁₆O₄, the cyclo­hexene rings adopt a sofa conformation. Adjacent mol­ecules are connected by C—H?O intermolecular interactions. Each mol­ecule is characterized by O—H?O intramolecular hydrogen bonds. The anti arrangement of the enolic OH group and the carbonyl O atom in the solid state is similar to the anti arrangement of the NH and carbonyl groups in indigo.     

Model porphyrin precursors: 1,2,4,5‐tetrakis(cyanomethyl)­benzene,methyl 3,4,5‐triacetoxy­benzoate and 2‐(N‐phthalimidomethyl)benzoic acid

In the crystalline state, the centrosymmetric mol­ecule 1,2,4,5‐tetrakis­(cyano­methyl)­benzene, C₁₄H₁₀N₄, has one cyano­methyl group in the benzene plane and one cyano­methyl group rotated 67.2 (2)° out of the benzene plane. Molecules of methyl 3,4,5‐tri­acetoxy­benzoate, C₁₄H₁₄O₈, form chains with each mol­ecule twisted 89.6 (1)° from the preceding mol­ecule. In this orientation, a close C—H?O contact is formed, with an H?O distance of 2.34 Å. The structure of 2‐(N‐phthalimido­methyl)­benzoic acid, C₁₆H₁₁NO₄, reveals hydrogen‐bonded dimers linked by the carboxyl groups of adjacent mol­ecules. The O4?O3 distance is 2.636 (2) Å and the O4—H?O3 angle is 171 (2)°.     

Adducts of 1,1,1‐tris(4‐hydroxy­phenyl)­ethane with 1,2‐bis(4‐pyridyl)­ethane and 1,2‐bis(4‐pyridyl)­ethene: continuously interwoven structures in three dimensions

In the adduct 1,2‐bis(4‐pyridyl)­ethane–1,1,1‐tris(4‐hydroxy­phenyl)­ethane (1/2), C₁₂H₁₂N₂·2C₂₀H₁₈O₃, the bipyridyl component lies across an inversion centre in P. The tris‐phenol mol­ecules [systematic name: 4,4′,4′′‐(ethane‐1,1,1‐triyl)­triphenol] are linked by O—H?O hydrogen bonds to form sheets built from R(38) rings, and symmetry‐related pairs of sheets are linked by the bipyridyl mol­ecules via O—H?N hydrogen bonds to form open bilayers. Each bilayer is interwoven with two adjacent bilayers, forming a continuous three‐dimensional structure. In the adduct 1,2‐bis(4‐pyridyl)­ethene–1,1,1‐tris(4‐hydroxy­phenyl)­ethane–methanol (1/1/1), C₁₂H₁₀N₂·C₂₀H₁₈O₃·CH₄O, the mol­ecules are linked by O—H?O and O—H?N hydrogen bonds into three interwoven three‐dimensional frameworks, generated by single spiral chains along [010] and [001] and a triple‐helical spiral along [100].     

Precursor of a β‐lactamase inhibitor: allyl (4S,8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.03,8]­undec‐2‐ene‐2‐carboxyl­ate

The molecular structure of the title tricyclic compound, C₁₇H₂₁NO₄, which is the immediate precursor of a potent synthetic inhibitor {Lek157: sodium (8S,9R)‐10‐[(E)‐ethyl­idene]‐4‐methoxy‐11‐oxo‐1‐aza­tri­cyclo­[7.2.0.0^3,8]­undec‐2‐ene‐2‐carboxyl­ate} with remarkable potency, provides experimental evidence for the previously modelled relative position of the fused cyclo­hexyl ring and the carbonyl group of the β‐lactam ring, which takes part in the formation of the initial tetrahedral acyl–enzyme complex. In this hydro­phobic mol­ecule, the overall geometry is influenced by C—H?O intramolecular hydrogen bonds [3.046 (4) and 3.538 (6) Å, with corresponding normalized H?O distances of 2.30 and 2.46 Å], whereas the mol­ecules are interconnected through intermolecular C—H?O hydrogen bonds [3.335 (4)–3.575 (5) Å].     

7‐Phenyl‐1‐oxa‐4‐thiaspiro[4.5]decan‐7‐ol stereoisomers

The stereoisomers of 7‐phenyl‐1‐oxa‐4‐thia­spiro­[4.5]­decan‐7‐ol, C₁₄H₁₈O₂S, have the same stereochemistry at the C atom bearing an OH group, i.e. axial OH and equatorial phenyl groups. However, the acetal S and O atoms are axial and equatorial, respectively, in one isomer and reversed in the second. Furthermore, the crystals of one isomer are composed of hydrogen‐bonded mol­ecules involving the hydroxyl H atom and the O atom of the five‐membered heterocyclic ring, with an O?O distance of 2.962 (3) Å, forming a polymeric chain along the b axis. The asymmetric unit of the other isomer is composed of two mol­ecules, wherein hydroxyl H atoms and the O atoms of the five‐membered heterocyclic rings display intramolecular O—H?O hydrogen bonds with O?O separations of 2.820 (2) and 2.834 (2) Å.     

Hydrogen bonding in C‐substituted nitroanilines: molecular ladders in 2‐trifluoromethyl‐4‐nitroaniline and sheets of R(12) and R(32) rings in 3‐trifluoromethyl‐4‐nitroaniline

In 2‐tri­fluoro­methyl‐4‐nitro­aniline, C₇H₅F₃N₂O₂, (I), the mol­ecules lie across a mirror plane in space group Pnma. The mol­ecules are linked by paired N—H?O hydrogen bonds to form a C(8)[R(6)] chain of rings, pairs of which are linked into a molecular ladder by a single C—H?O hydrogen bond. The isomeric 3‐tri­fluoro­methyl‐4‐nitro­aniline, (II), has Z′ = 2 in space group P2₁/c. Each mol­ecule is linked to four others by N—H?O hydrogen bonds to form sheets built from alternating R(12) and R(32) rings.     

5‐Fluoro­indoline‐2,3‐dione

In the title compound (5‐fluoro­isatin), C₈H₄FNO₂, the N atom of one mol­ecule is linked to the amido‐O atom of an adjacent mol­ecule across a center of symmetry by a cyclic hydrogen bond [N?O = 2.888 (4) Å].     

Methyl {1‐[2,3‐O‐iso­propyl­idene‐5‐O‐(4‐nitro­benzoyl)‐α‐d‐ribo­furan­osyl]‐4‐methoxy­carbonyl‐1H‐1,2,3‐triazol‐5‐yl}acetate

In the title compound, C₂₂H₂₄N₄O₁₁, the N‐glycosidic torsion angles O′—C′—N—C and O′—C′—N—N are ?34.1 (6) and 148.8 (3)°, respectively. The mol­ecule displays an α‐d configuration with the ribo­furan­ose moiety in an O′‐exo–C′‐endo pucker. There are only weak C—H?O and C—H?N intra‐ and intermolecular interactions.     

Aquabromo(6‐carboxypyridine‐2‐carboxylato‐O,N,O′)mercury(II)

The title compound, [HgBr(C₇H₄NO₄)(H₂O)], was obtained by the reaction of an aqueous solution of mercury(II) bromide and pyridine‐2,6‐di­carboxylic acid (picolinic acid, dipicH₂). The shortest bond distances to Hg are Hg—Br 2.412 (1) Å and Hg—N 2.208 (5) Å; the corresponding N—Hg—Br angle of 169.6 (1)° corresponds to a slightly distorted linear coordination. There are also four longer Hg—O interactions, three from dipicH^? [2.425 (4) and 2.599 (4) Å within the asymmetric unit, and 2.837 (4) Å from a symmetry‐related mol­ecule] and one from the bonded water mol­ecule [2.634 (4) Å]. The effective coordination of Hg can thus be described as 2+4. The mol­ecules are connected to form double‐layer chains parallel to the y axis by strong O—H?O hydrogen bonds between carboxylic acid groups of neighbouring mol­ecules, and by weaker hydrogen bonds involving both H atoms of the water mol­ecule and the O atoms of the carboxylic acid groups.     

(1S,2R,2′S)‐ and (1S,2S,2′S)‐1‐phenyl‐2‐phenyl­thio‐2‐(tetra­hydro­pyran‐2′‐yl­thio)­ethanol diastereoisomers at 193 K

In the synthesis of 1‐phenyl‐2‐phenyl­thio‐2‐(tetra­hydro­pyran‐2‐yl­thio)­ethanol, C₁₉H₂₂O₂S₂, four diastereoisomers are formed. Two non‐centrosymmetric enantiomeric forms which crystallize in space groups P2₁2₁2₁ and Pna2₁ are presented. The former has an intramolecular hydrogen bond between the hydroxyl group and the O atom of the tetra­hydro­pyran ring. In the latter isomer, the hydroxyl group forms an intermolecular hydrogen bond to the O atom of the tetra­hydro­pyran­yl group of a neighbouring mol­ecule, joining the mol­ecules into chains in the c‐axis direction; the O?O distances are 2.962 (4) and 2.764 (3) Å, respectively. The tetra­hydro­pyran rings are in chair conformations in both isomers and the S side chain has an equatorial orientation in the former, but an axial orientation in the latter mol­ecule.