2‐[2‐(Pyrrolidin‐2‐yl)propan‐2‐yl]‐1H‐pyrrole and its amide derivative 1‐{2‐[2‐(1H‐pyrrol‐2‐yl)propan‐2‐yl]pyrrolidin‐1‐yl}ethanone

In the title compounds, C₁₁H₁₈N₂, (II), and C₁₃H₂₀N₂O, (III), the pyrrolidine rings have twist conformations. Compound (II) crystallizes with two independent molecules (A and B) in the asymmetric unit. The mean planes of the pyrrole and pyrrolidine rings are inclined to one another by 89.99 (11) and 89.35 (10)° in molecules A and B, respectively. In (III), the amide derivative of (II), the same dihedral angle is much smaller, at only 13.42 (10)°. In the crystal structure of (II), the individual molecules are linked via N—H...N hydrogen bonds to form inversion dimers, each with an R²₂(12) graph‐set motif. In the crystal structure of (III), the molecules are linked via N—H...O hydrogen bonds to form inversion dimers with an R²₂(16) graph‐set motif.     

Hydrogen‐bonded sheets in 2‐(2‐aminophenyl)‐1H‐benzimidazol‐3‐ium dihydrogen phosphate

The title salt, C₁₃H₁₂N₃⁺·H₂PO₄⁻, contains a nonplanar 2‐(2‐aminophenyl)‐1H‐benzimidazol‐3‐ium cation and two different dihydrogen phosphate anions, both situated on twofold rotation axes in the space group C2. The anions are linked by O—H...O hydrogen bonds into chains of R₂²(8) rings. The anion chains are linked by the cations, via hydrogen‐bonding complementarities and electrostatic interactions, giving rise to a sheet structure with alternating rows of organic cations and inorganic anions. Comparison of this structure with that of the pure amine reveals that the two compounds generate characteristically different sheet structures. The anion–anion chain serves as a template for the assembly of the cations, suggesting a possible application in the design of solid‐state materials.     

Synthesis and fluorescent properties of 2‐(1H‐benzimidazol‐2‐yl)‐phenol derivatives

A high yield one pot synthesis of 2‐(2‐hydroxyaryl)‐1H‐benzirrndazole derivatives by 2‐hydroxy aromatic aldehydes with aromatic 1,2‐diamines in the presence of manganese(III) acetate at room temperature was developed. Nine fluorescencers 2‐(2‐hydroxyaryl)‐1H‐benzirrndazoles with substituent(s) X (X = H, CH₃, CH₃O, Cl) and two fluorescencers 2‐(2‐hydroxyaryl)‐1H‐naphth[2,3‐d]imidazoles with substituent of H or Cl were prepared in 38–87% yield and the ultraviolet absorption and fluorescent spectra of the eleven compounds synthesized were measured in methanol. The fluorescent characteristics of the 2‐(2‐hydroxyaryl)benzimidazole derivatives prepared were investigated on the basis of excited‐state intramolecular proton transfer mechanism, Stokes' shift, quantum yield, and the relationship between fluorescent intensity and the substituents were derived.     

Two hydrates of 2,6‐bis­(1H‐benzimidazol‐2‐yl)­pyridine

The structures of the mono‐ and sesquihydrates of 2,6‐bis(1H‐benz­imi­da­zol‐2‐yl)­pyridine (bbip) are reported. Phase (I), C₁₉H₁₃N₅·H₂O, has one water and one bbip mol­ecule in the asymmetric unit, while phase (II), C₁₉H₁₃N₅·1.5H₂O, has three water mol­ecules and two bbip mol­ecules in the asymmetric unit. The compounds exhibit very similar molecular geom­etries but different packing organizations, which result from intricate hydrogen‐bonding schemes.     

Determination of Electrochemical Interaction between 2‐(1H‐benzimidazol‐2‐yl) Phenol and DNA Sequences

A benzimidazole derivate, 2‐(1H‐benzimidazol‐2‐yl) phenol (2‐Bip) and its interaction mechanism with sequence specific DNA was examined with Differential Pulse Voltammetry (DPV). We, for the first time, investigated the effect of 2‐Bip on sequence specific DNA with electrochemical methods by evaluating both guanine and 2‐Bip oxidation signal changes. In the study, probe sequences were immobilized to the surface of the electrodes and then hybridization was achieved by sending the complementary target onto the probe modified electrodes. Following the hybridization, 2‐Bip solution was interacted with probe and hybrid sequences to see the effect of 2‐Bip on different DNA sequences. The binding constant (K), toxicity (S%) and thermodynamic parameters, i. e., Gibbs free energy (ΔG°) of 2‐Bip‐DNA complexes were evaluated. K was calculated as 5×10⁵ and the change in the ΔG° was found as ?32.50 kJ mol^?1, which are consistent well with the literature. Furthermore, S% showed that 2‐Bip is moderately toxic to single stranded DNA (ssDNA) and toxic to double stranded DNA (dsDNA). From our experimental data, we made four conclusions (i) 2‐Bip affects both ssDNA and dsDNA, (ii) 2‐Bip interaction mode with DNA could be non‐covalent interactions, (iii) 2‐Bip could be used as new DNA hybridization indicator due to its distinct effects on ssDNA and dsDNA, (iv) 2‐Bip could be used as a drug molecule for its DNA effect.     

Synthesis of Novel 3‐(3‐(5‐Methylisoxazol‐3‐yl)‐7H‐[1,2,4]Triazolo [3,4‐b][1,3,4]Thiadiazin‐6‐yl)‐2H‐Chromen‐2‐Ones

A novel series of coumarin substituted triazolo‐thiadiazine derivatives were designed and synthesized by using 5‐methyl isoxazole‐3‐carboxylic acid ( 1 ), thiocarbohydrazide ( 2 ), and various substituted 3‐(2‐bromo acetyl) coumarins ( 4a , 4b , 4c , 4e , 4d , 4f , 4g , 4h , 4i , 4j ). Fusion of 5‐methyl isoxazole‐3‐carboxylic acid with thiocarbohydrazide resulted in the formation of the intermediate 4‐amino‐5‐(5‐methylisoxazol‐3‐yl)‐4H‐1,2,4‐triazole‐3‐thiol ( 3 ). This intermediate on further reaction with substituted 3‐(2‐bromo acetyl) coumarins under simple reaction conditions formed the title products 3‐(3‐(5‐methylisoxazol‐3‐yl)‐7H‐[1,2,4]triazolo[3,4‐b][1,3,4]thiadiazin‐6‐yl‐2H‐chromen‐2‐ones ( 5a , 5b , 5c , 5d , 5e , 5f , 5g , 5h , 5i , 5j ) in good to excellent yields. All the synthesized compounds were well characterized by physical, analytical, and spectroscopic techniques.     

Syntheses of N‐[3‐(1‐methyl‐1H‐2‐imidazolyl)propyl]benzamides and N‐[3‐(1‐methyl‐1H‐2‐imidazolyl)propyl]benzenesulfonamides

A series of substituted N‐(4‐substituted‐benzoyl)‐N‐[3‐(1‐methyl‐1H‐imidazol‐2‐yl)propyl]amines ( 13 ) and N‐arylsulfonyl‐N‐[3‐(1‐methyl‐1H‐imidazol‐2‐yl)propyl]amines ( 14 ) were prepared from the reaction of 3‐(1‐methyl‐1H‐imidazol‐2‐yl)propan‐1‐amine ( 7 ) with substituted benzoyl chloride or substituted‐benzene sulfonyl chloride respectively. Compound 7 was prepared by two independent methods.     

Isomeric 3‐ and 4‐chloro‐N‐[1‐(1H‐pyrrol‐2‐yl)ethylidene]aniline

The title isomers, namely 3‐chloro‐N‐[1‐(1H‐pyrrol‐2‐yl)ethylidene]aniline, (I), and 4‐chloro‐N‐[1‐(1H‐pyrrol‐2‐yl)ethylidene]aniline, (II), both C₁₂H₁₁ClN₂, differ in the position of the chlorine substitution. Both compounds have the basic iminopyrrole structure, which shows a planar backbone with similar features. The dihedral angle formed by the planes of the pyrrole and benzene rings is 75.65 (7)° for (I) and 86.56 (8)° for (II). The H atom bound to the pyrrole N atom is positionally disordered and partial protonation occurs at the imino N atom in (I), while this phenomenon is absent from the structure of (II). Packing interactions for both compounds include intermolecular N—H...N hydrogen bonds and C—H...π interactions, forming centrosymmetric dimers for both (I) and (II).     

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile

(Z)‐3‐(1H‐Indol‐3‐yl)‐2‐(3‐thienyl)­acrylo­nitrile, C₁₅H₁₀N₂S, (I), and (Z)‐3‐[1‐(4‐tert‐butyl­benzyl)‐1H‐indol‐3‐yl]‐2‐(3‐thienyl)­acrylo­nitrile, C₂₆H₂₄N₂S, (II), were prepared by base‐catalyzed reactions of the corresponding indole‐3‐carbox­aldehyde with thio­phene‐3‐aceto­nitrile. ¹H/¹³C NMR spectral data and X‐ray crystal structures of compounds (I) and (II) are presented. The olefinic bond connecting the indole and thio­phene moieties has Z geometry in both cases, and the mol­ecules crystallize in space groups P2₁/c and C2/c for (I) and (II), respectively. Slight thienyl ring‐flip disorder (ca 5.6%) was observed and modeled for (I).     

Bis{tris[(1H‐benzimidazol‐3‐ium‐2‐yl)methyl]amine} tetraaquaocta‐μ2‐chlorido‐octachloridopentacadmate(II) monohydrate

The title compound, (C₂₄H₂₄N₇)₂[Cd₅Cl₁₆(H₂O)₄]·H₂O, contains a [Cd₅Cl₁₆(H₂O)₄]⁶⁻ anion, two triply protonated tris[(1H‐benzimidazol‐3‐ium‐2‐yl)methyl]amine cations and one solvent water molecule. The structure of the anion is a novel chloride‐bridged pentanuclear cluster. The five unique Cd^II centres have quite different coordination environments. Two of the central hexacoordinated Cd^II cations have a CdOCl₅ chromophore, in which each Cd^II cation is ligated by four bridging chloride ligands, one terminal chloride ligand and one water molecule, adopting a distorted octahedral environment. The third central Cd^II cation is octahedrally coordinated by four bridging chloride ligands and two water molecules. Finally, the two terminal Cd^II cations are pentacoordinated by two bridging and three terminal chloride ligands and adopt a trigonal–bipyramidal geometry. A three‐dimensional supramolecular network is formed through intra‐ and intermolecular O—H...O, O—H...Cl, N—H...Cl and N—H...O hydrogen bonds and π–π interactions between the cations and anions.<!?tpb=20.6pt>     

1‐Carboxymethyl‐3‐methyl‐1H‐imidazol‐3‐ium chloride 2‐(3‐methyl‐1H‐imidazol‐3‐ium‐1‐yl)acetate monohydrate: a crystal stabilized by imidazolium zwitterions

The title compound, C₆H₉N₂O₂⁺·Cl⁻·C₆H₈N₂O₂·H₂O, contains one 2‐(3‐methyl‐1H‐imidazol‐3‐ium‐1‐yl)acetate inner salt molecule, one 1‐carboxymethyl‐3‐methyl‐1H‐imidazol‐3‐ium cation, one chloride ion and one water molecule. In the extended structure, chloride anions and water molecules are linked via O—H...Cl hydrogen bonds, forming an infinite one‐dimensional chain. The chloride anions are also linked by two weak C—H...Cl interactions to neighbouring methylene groups and imidazole rings. Two imidazolium moieties form a homoconjugated cation through a strong and asymmetric O—H...O hydrogen bond of 2.472 (2) Å. The IR spectrum shows a continuous D‐type absorption in the region below 1300 cm⁻¹ and is different to that of 1‐carboxymethyl‐3‐methylimidazolium chloride [Xuan, Wang & Xue (2012). Spectrochim. Acta Part A, 96 , 436–443].     

A one‐dimensional silver(I) coordination polymer based on the 2‐[2‐(pyridin‐4‐yl)‐1H‐benzimidazol‐1‐ylmethyl]phenol ligand exhibiting photoluminescence

A one‐dimensional Ag^I coordination complex, catena‐poly[[silver(I)‐μ‐{2‐[2‐(pyridin‐4‐yl)‐1H‐benzimidazol‐1‐ylmethyl]phenol‐κ²N²:N³}] perchlorate monohydrate], {[Ag(C₁₉H₁₅N₃O)]ClO₄·H₂O}_n, was synthesized by the reaction of 2‐[2‐(pyridin‐4‐yl)‐1H‐benzimidazol‐1‐ylmethyl]phenol (L) with silver perchlorate. In the complex, the L ligands are arranged alternately and link Ag^I cations through one benzimidazole N atom and the N atom of the pyridine ring, leading to an extended zigzag chain structure. In addition, the one‐dimensional chains are extended into a three‐dimensional supramolecular architecture via O—H...O hydrogen‐bond interactions and π–π stacking interactions. The complex exhibits photoluminescence in acetonitrile solution, with an emission maximum at 390 nm, and investigation of the thermal stability reveals that the network structure is stable up to 650 K.     

(1‐{[2‐(6‐Methoxynaphthalen‐1‐yl)ethyl]amino}ethylidene)oxidanium bromide monohydrate

The title salt, C₁₅H₁₈NO₂⁺·Br⁻·H₂O, is an analogue of the antidepressant drug agomelatine. The cation is protonated at the carbonyl O atom of its amide group. The side chain at the 1‐position adopts an extended conformation, with all non‐H atoms lying in the same plane as the naphthalene ring. This is in contrast with the crystal structures known for three agomelatine polymorphs, and also with two known cocrystals containing agomelatine. The structure displays three types of hydrogen bond, namely C=O—H...O, N—H...Br and O—H...Br, which define a two‐dimensional network parallel to the (100) plane. The naphthalene rings interdigitate in a `zipper‐like' fashion between these hydrogen‐bonded networks, forming an offset arrangement. Direct face‐to‐face π–π contacts between naphthalene rings are not present in the structure.     

A two‐dimensional network formed by self‐associating silver(I) perchlorate with 3‐[4‐(2‐thienyl)‐2H‐cyclopenta[d]pyridazin‐1‐yl]benzonitrile

In the organometallic silver(I) supramolecular complex poly[[silver(I)‐μ₃‐3‐[4‐(2‐thienyl)‐2H‐cyclopenta[d]pyridazin‐1‐yl]benzonitrile] perchlorate methanol solvate], {[Ag(C₁₈H₁₁N₃S)](ClO₄)·CH₃OH}_n, there is only one type of Ag^I center, which lies in an {AgN₂Sπ} coordination environment. Two unsymmetric multidentate 3‐[4‐(2‐thienyl)‐2H‐cyclopenta[d]pyridazin‐1‐yl]benzonitrile (L) ligands link two Ag^I atoms through π–Ag^I interactions into an organometallic box‐like unit, from which two 3‐cyanobenzoyl arms stretch out in opposite directions and bind two Ag^I atoms from neighboring box‐like building blocks. This results in a novel two‐dimensional network extending in the crystallographic bc plane. These two‐dimensional sheets stack together along the crystallographic a axis to generate parallelogram‐like channels. The methanol solvent molecules and the perchlorate counter‐ions are located in the channels, where they are fixed by intermolecular hydrogen‐bonding interactions. This architecture may provide opportunities for host–guest chemistry, such as guest molecule loss and absorption or ion exchange. The new fulvene‐type multidentate ligand L is a good candidate for the preparation of Cp–Ag^I‐containing (Cp is cyclopentadienyl) organometallic coordination polymers or supramolecular complexes.     

Ethyl β‐{2‐[4‐(dimethylamino)phenyliminomethyl]‐1‐(phenylsulfonyl)indol‐3‐yl}acrylate

The title compound, C₂₈H₂₇N₃O₄S, crystallizes in the centrosymmetric space group P2₁/n, with one mol­ecule in the asymmetric unit. In the indole ring, the dihedral angle between the fused rings is 3.6 (1)°. The phenyl ring of the sulfonyl substituent makes a dihedral angle of 79.2 (1)° with the best plane of the indole moiety. The phenyl ring of the di­methyl­amino­phenyl group is orthogonal to the phenyl ring of the phenyl­sulfonyl group. The dihedral angle formed by the weighted least‐squares planes through the pyrrole ring and the phenyl ring of the di­methyl­amino­phenyl group is 7.8 (1)°. The molecular structure is stabilized by C—H?O and C—H?N interactions.     

Stereoselective synthesis of (2E) 3‐amino‐2‐(1H‐benzimidazol‐2‐yl)acrylate and symmetric bisacrylates by transamination reactions

A range of various amines 2(a–i) was tested in transamination reactions using ethyl 2‐(1H‐benzimidazol‐2‐yl)‐3‐dimethylamino‐acrylate 1a. The (E)‐s‐cis/trans conformation of some representative products 4 was analyzed by ¹H and ¹³C NMR spectra. The C‐2/C‐3 bond of the compounds 3(a–i) is strongly polarized by a push‐pull effect. In the same manner, reactions of ethyl 2‐(benzoxazol‐2‐yl)‐3‐dimethylamino‐acrylate 1c with 1,4‐diaminobenzene 2i, ethylenediamine 2i, and 1,5‐diaminomaphthalene 2k have been investigated and gave directly the corresponding symmetric bis‐acrylates 4(a–c) in good yields. © 1999 John Wiley & Sons, Inc. Heteroatom Chem 10: 446–454, 1999     

All Solid State Chromium(III) Selective Potentiometric Sensor Based on 2‐(1‐(2‐((3‐(2‐Hydroxyphenyl)‐1H‐pyrozol‐1‐yl)methyl)benzyl)‐1H‐pyrazol‐3‐yl)phenol

Highly selective all solid state electrochemical sensor based on a synthesized compound i.e. 2‐(1‐(2‐((3‐(2‐hydroxyphenyl)‐1H‐pyrozol‐1‐yl)methyl)benzyl)‐1H‐pyrazol‐3‐yl)phenol (I) as an ionophore has been prepared and investigated for the selective quantification of chromium(III) ions. The effect of various plasticizers, viz. dibutyl phosphonate (DBP), dibutyl(butyl) phosphonate (DBBP), nitrophenyl octyl ether (NPOE), tris‐(2‐ethylhexyl)phosphonate (TEP), tri‐butyl phosphonate (TBP), dioctyl phthalate (DOP), dioctyl sebacate (DOS), benzyl acetate (BA) and acetophenone (AP) along with anion excluders NaTPB (sodium tetraphenyl borate) and KClTPB (potassium(tetrakis‐4‐chlorophenyl)borate was also studied. The optimum composition of the best performing membrane contained (I):KClTPB:NPOE:PVC in the ratio 15 : 3 : 40 : 42 w/w. The sensor exhibited near Nernstian slope of 20.1±0.2 mV/decade of activity in the working concentration range of 1.2×10^?7–1.0×10^?1 M, and in a pH range of 3.8–4.5. The sensor exhibited a fast response time of 10 s and could be used for about 5 months without any considerable divergence in potentials. The proposed sensor showed very good selectivity over most of the common cations including Na⁺, Li⁺, K⁺, Cu²⁺, Sr²⁺, Ni²⁺, Co²⁺, Ba²⁺, Hg²⁺, Pb²⁺, Zn²⁺, Cs⁺, Mg²⁺, Cd²⁺, Al³⁺, Fe³⁺and La³⁺. The activity of Cr(III) ions was successfully determined in the industrial waste samples by using this sensor.     

4‐[1‐(Phenylsulfonyl)indol‐3‐yl]‐3a,4,5,9b‐tetrahydro‐3H‐cyclopenta[c]quinoline

In the title compound, C₂₆H₂₂N₂O₂S, the tetra­hydro­pyridine ring has a conformation intermediate between half‐chair and sofa. The tetrahydroquinoline mean plane makes a dihedral angle of 73.3 (1)° with the cyclopentene ring, which adopts an envelope conformation, and an angle of 45.45 (4)° with the indole best plane. The dihedral angle between the benzene and pyrrole rings is 2.6 (1)°. The orientations of the phenyl ring on the sulfonyl group and of the indole are governed by weak C—H?O interactions. The packing of the mol­ecule in the solid state is stabilized by C—H?O and C—H?N hydrogen bonds.     

Green chemistry synthesis: 2‐amino‐3‐[(E)‐(2‐pyridyl)methylideneamino]but‐2‐enedinitrile monohydrate and 5‐cyano‐2‐(2‐pyridyl)‐1‐(2‐pyridylmethyl)‐1H‐imidazole‐4‐carboxamide

The title compounds, C₁₀H₉N₅O·H₂O (L1·H₂O) and C₁₆H₁₂N₆O (L2), were synthesized by solvent‐free aldol condensation at room temperature. L1, prepared by grinding picolinaldehyde with 2,3‐diamino‐3‐isocyanoacrylonitrile in a 1:1 molar ratio, crystallized as a monohydrate. L2 was prepared by grinding picolinaldehyde with 2,3‐diamino‐3‐isocyanoacrylonitrile in a 2:1 molar ratio. By varying the conditions of crystallization it was possible to obtain two polymorphs, viz. L2‐I and L2‐II; both crystallized in the monoclinic space group P2₁/c. They differ in the orientation of one pyridine ring with respect to the plane of the imidazole ring. In L2‐I, this ring is oriented towards and above the imidazole ring, while in L2‐II it is rotated away from and below the imidazole ring. In all three molecules, there is a short intramolecular N—H...N contact inherent to the planarity of the systems. In L1·H₂O, this involves an amino H atom and the C=N N atom, while in L2 it involves an amino H atom and an imidazole N atom. In the crystal structure of L1·H₂O, there are N—H...O and O—H...O intermolecular hydrogen bonds which link the molecules to form two‐dimensional networks which stack along [001]. These networks are further linked via intermolecular N—H...N(cyano) hydrogen bonds to form an extended three‐dimensional network. In the crystal structure of L2‐I, symmetry‐related molecules are linked via N—H...N hydrogen bonds, leading to the formation of dimers centred about inversion centres. These dimers are further linked via N—H...O hydrogen bonds involving the amide group, also centred about inversion centres, to form a one‐dimensional arrangement propagating in [100]. In the crystal structure of L2‐II, the presence of intermolecular N—H...O hydrogen bonds involving the amide group results in the formation of dimers centred about inversion centres. These are linked via N—H...N hydrogen bonds involving the second amide H atom and the cyano N atom, to form two‐dimensional networks in the bc plane. In L2‐I and L2‐II, C—H...π and π–π interactions are also present.     

1‐Methyl‐1H‐imidazo[4,5‐f]quinolin‐6‐ium chloride monohydrate

The title compound, C₁₁H₁₀N₃⁺·Cl^?·H₂O, belongs to the N1‐methyl‐substituted imidazo­[4,5‐f]­quinoline family, in which the heterocyclic ring is protonated at the pyridine rather than at the imidazole N atom. The mol­ecule as a whole is almost exactly planar. The molecular structure has been compared with that of the 2‐amino analogue described in the literature, and it was found that the extra amino group of the latter is involved in conjugation with the adjacent double bond, i.e. the conjugation does not extend over the entire heterocyclic system. The cation of the title compound forms a strong hydrogen bond with the Cl^? anion and the anions are interconnected by the water solvent mol­ecule.