The vibrational spectra of the boron halides and their molecular complexes. Part 13. Ab initio studies of the complexes of boron trifluoride with formaldehyde and some of its analogs

The structure, the interaction energy, and the vibrational spectrum of the electron donor–acceptor complex formed between boron trifluoride, as a Lewis acid, and formaldehyde, as a Lewis base, have been determined by means of ab initio calculations at the second‐order level of Møller–Plesset perturbation theory, using a triple‐zeta basis set with polarization and diffuse functions on all atoms. The object was to examine the differences in the properties of the complexes formed between boron trifluoride and an oxygen base containing oxygen in the sp² hybrid state with those of some sp³ oxygen bases studied earlier. The investigation has then been extended to include the related bases thioformaldehyde and methanimine, to assess the effect of substituting the oxygen atom by a sulphur atom or an imino group. A further range of formaldehyde analogs, containing one and two methyl groups, one and two fluorine atoms, and one methyl group and one fluorine atom, has also been included. The preferred structure of each complex has been identified. The computed data have been compared, and the complex properties correlated with some relevant physical properties of the bases. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

The vibrational spectra of the boron halides and their molecular complexes Part 10. The complexes of boron trifluoride with ammonia and its methyl derivatives. An ab initio study

Ab initio calculations, at the level of second order M?ller-Plesset perturbation theory, and using a triple-zeta Gaussian basis set with polarization and diffuse functions on all atoms, have been carried out on the donor-acceptor complexes of boron trifluoride with ammonia and its mono-, di- and trimethyl derivatives. The structures, interaction energies and vibrational spectra of the complexes have been determined. An eclipsed and a staggered conformer have been examined for each complex, and the preferred conformer was found to be the staggered species in each case. The computed data have been compared with those for some similar complexes containing boron trifluoride and a series of oxygen and sulphur electron donors (water, hydrogen sulphide, methanol, methanethiol, dimethyl ether and dimethyl sulphide) and the effect of successive methyl substitution in all three series has been investigated.     

The Fourier transform infrared spectrum of the boron trifluoride–nitrous oxide complex

The Fourier transform infrared spectra of boron trifluoride and nitrous oxide, co-deposited in nitrogen and argon matrices at cryogenic temperatures, have been recorded. Concentration and temperature cycling experiments have established the existence of a 1:1 molecular complex, the spectrum of which is consistent with a structure similar to that of BF₃.N₂O in the gas phase. The structure derived from the infrared spectrum is also consistent with the results of a series of ab initio molecular orbital calculations reported by us recently. The experimental wavenumbers and complex-monomer wavenumber shifts compare reasonably well, by and large, with those predicted by the ab initio calculations.     

FTIR, FT-Raman spectra and ab initio DFT vibrational analysis of 2,4-dichloro-6-nitrophenol

The FTIR and FT-Raman spectra of 2,4-dichloro-6-nitrophenol (2,4-DC6NP) has been recorded in the region 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The optimized geometry, frequency and intensity of the vibrational bands of (2,4-DC6NP) were obtained by the ab initio and DFT levels of theory with complete relaxation in the potential energy surface using 6-31G(d,p) and 6-311+G(d,p) basis sets. The harmonic vibrational frequencies were calculated and the scaled values have been compared with experimental FTIR and FT-Raman spectra. The observed and the calculated frequencies are found to be in good agreement. The experimental spectra also coincide satisfactorily with those of theoretically constructed bar type spectrograms.     

The vibrational and NMR spectra,conformations and ab initio calculations of aminomethylene,propanedinitrile and itsN-methyl derivatives

The IR and Raman spectra of aminomethylene propanedinitrile (AM) [H₂N-CH=C(CN)₂], (methylamino)methylene propanedinitrile (MAM) [CH₃NH-CH=C(CN)₂] and (dimethylamino)methylene propanedinitrile (DMAM) [(CH₃)₂N-CH=C(CN)₂] as solids and solutes in various solvents have been recorded in the region 4000-50 cm^–1. AM and DMAM can exist only as one conformer. From the vibrational and NMR spectra of MAM in solutions, the existence of two conformers with the methyl group orientedanti andsyn toward the double C=C bond were confirmed. The enthalpy difference H ⁰ between the conformers was measured to be 3.7±1.4 kJ mol^–1 from the IR spectra in acetonitrile solution and 3.4±1.1 kJ mol^–1 from the NMR spectra in DMSO solution. Semiempirical (AM1, PM3, MNDO, MINDO3) and ab initio SCF calculations using a DZP basis set were carried out for all three compounds. The calculations support the existence of two conformersanti andsyn for MAM, withanti being 7.8 kJ mol^–1 more stable thansyn from ab initio and 8.6, 13.4, 11.6, and 10.8 kJ mor^–1 from AM1, PM3, MNDO, and MINDO3 calculations, respectively. Finally, complete assignments of the vibrational spectra for all three compounds were made with the aid of normal coordinate calculations employing scaled ab initio force constants. The same scale factors were optimized on the experimental frequencies of all three compounds, and a very good agreement between calculated and experimental frequencies was achieved.     

Vibrational spectra of the boron halides and their molecular complexes. Part 11. Complexes of boron trifluoride with phosphine and its methyl derivatives. An ab initio study

Ab initio calculations, at the second-order level of M?ller-Plesset perturbation theory, using a triple-zeta Gaussian basis set with polarization and diffuse functions on all atoms, have been carried out on the donor-acceptor complexes of boron trifluoride with phosphine and its mono-, di-, and trimethyl derivatives. The structures, interaction energies, and vibrational spectra of the complexes were determined. The preferred conformer was found to be the staggered species in each case. The computed data were compared with those for some similar complexes containing boron trifluoride and a series of related oxygen, sulfur, and nitrogen bases, and the effect of successive methyl substitution in each series was investigated.     

Force fields and assignments of the vibrational spectra of acridine and phenazine—an ab initio study

A complete set of force constants and their corresponding scale factors in non-redundant local coordinates were obtained by fitting the in-plane ab initio Hartree–Fock (HF) vibrational frequencies computed using 4-21G and 6-31G^** basis sets to the experimental ones. Using these force constants the potential energy distribution (PED) of the normal modes was obtained and based on the PED the earlier empirical assignments were either confirmed or reassigned for all the in-plane fundamentals. The force constants of acridine and phenazine are compared to those of anthracene to study the similarities and differences. Probable assignment is proposed for the out-of-plane fundamentals of acridine based on Durig's simple scaling of the local force constants.     

Ab initio and DFT studies of the molecular structures and vibrational spectra of succinonitrile

The Molecular structure, conformational stability and vibrational frequencies of succinonitrile NCCH2CH2CN have been investigated with ab initio and density functional theory (DFT) methods implementing the standard 6-311++G* basis set. The potential energy surfaces (PES) have been explored at DFT-B3LYP, HF and MP2 levels of theory. In agreements with previous experimental results, the molecule was predicted to exist in equilibrium mixture of trans and gauche conforms with the trans form being slightly lower in energy. The vibrational frequencies and the corresponding vibrational assignments of succinonitrile in both C2h and C2 symmetry were examined theoretically and the calculated Infrared and Raman spectra of the molecule were plotted. Observed frequencies for normal modes were compared with those calculated from normal mode coordinate analysis carried out on the basis of ab initio and DFT force fields using the standard 6-311++G* basis set of the theoretical optimized geometry. Theoretical IR intensities and Raman activities are reported.     

Raman and infrared spectra, conformational stability, barriers to internal rotation, vibrational assignment, and ab initio calculations of 3-methyl-3-butenenitrile

The Raman (3500-30 cm⁻¹) spectra of liquid and solid and the infrared (3500-40 cm⁻¹) spectra of gaseous and solid 3-methyl-3-butenenitrile, CH₂C(CH₃)CH₂CN, have been recorded. Both cis and gauche conformers have been identified in the fluid phases but only the cis form remains in the solid. Variable temperature (−55 to −100 °C) studies of the infrared spectra of the sample dissolved in liquid xenon have been carried out. From these data, the enthalpy difference has been determined to be 163±16 cm⁻¹ (1.20±0.19 kJ mol⁻¹), with the cis conformer the more stable rotamer. It is estimated that there is 48±2% of the gauche conformer present at  25°C. A complete vibrational assignment is proposed for the cis conformer based on infrared band contours, relative intensities, depolarization ratios and group frequencies. Several of the fundamentals for the gauche conformer have also been identified. The vibrational assignments are supported by normal coordinate calculations utilizing ab initio force constants. Complete equilibrium geometries have been obtained for both rotamers by ab initio calculations employing the 6-31G(d), 6-311G(d,p), 6-311+G(d,p) and 6-311+G(2d,2p) basis sets at the levels of restricted Hartree-Fock (HF) and/or Møller-Plesset perturbation theory to the second order (MP2). Only with the 6-311G(2d,2p) and 6-311G(2df,2pd) basis sets with or without diffuse functions is the cis conformer predicted to be more stable than the gauche form. The potential energy terms for the conformational interchange have been obtained at the MP2(full)/6-311+G(2d,2p) level, and compared to those obtained from the experimental data. The results are discussed and compared to the corresponding quantities obtained for some similar molecules.     

An experimental and theoretical study of molecular structure and vibrational spectra of 2-chloronicotinic acid by density functional theory and ab initio Hartree–Fock calculations

In this work, the Fourier transform Raman and Fourier transform infrared spectra of 2-chloronicotinic acid (2-CNA) are recorded in the solid phase. The molecular geometry, vibrational frequencies, infrared intensities and Raman scattering activities of 2-CNA in ground state have been calculated by using ab initio Hartree–Fock (HF) and density functional (B3LYP and B3PW91) methods with 6-31G(d) and 6-311G(d) basis sets level. On the basis of the comparison between calculated and experimental results and the comparison with related molecule, assignments of fundamental vibrational modes are examined. The optimized geometric parameters (bond lengths and bond angles) obtained by using HF show the best agreement with the experimental values of 2-CNA. Comparison of the observed fundamental vibrational frequencies of 2-CNA and calculated results by density functional (B3LYP and B3PW91) and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock and B3PW91 approach for molecular vibrational problems.     

Raman and infrared spectra, conformational stability, ab initio calculations and vibrational assignments for 2-chloroethyl silane

The infrared (3500–30 cm⁻¹) spectra of gaseous and solid and the Raman (3500–10 cm⁻¹) spectra of liquid with quantitative depolarization ratios and solid 2-chloroethyl silane, ClCH₂CH₂SiH₃, have been recorded. Similar data have been recorded for the Si–d₃ isotopomer. These data indicate that two conformers, trans and gauche, are present in the fluid states but only one conformer, trans, is present in the solid. The mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (−55 to −100°C) has been recorded. The enthalpy difference between the conformers has been determined to be 181±12 cm⁻¹ (2.17±0.14 kJ/mol) with the trans rotamer the more stable form. From the isolated Si–H frequencies from the Si–d₂ isotopomer the r_o Si–H distances of 1.484 and 1.483 Å for the trans and 1.481 for the gauche conformers have been obtained. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G** from which structural parameters and conformational stabilities have been determined. With all the basis sets the trans form is predicted to be the more stable conformer which is consistent with the experimental results. These results are compared to the corresponding quantities for the carbon analogue.     

Molecular structure and vibrational spectra of indole and 5-aminoindole by density functional theory and ab initio Hartree–Fock calculations

The molecular geometry and vibrational frequencies of indole and 5-aminoindole in the ground state have been calculated by using the Hartree–Fock and density functional method with 6-311++G(d,p) basis set. The optimized geometrical parameters obtained by DFT calculations are in good agreement with the experimental values. Comparison of the observed fundamental vibrational frequencies of indole and 5-aminoindole with the calculated results by density functional and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock approach for molecular vibrational problems. The theoretical spectrograms for FT-IR spectrum of 5-aminoindole have been constructed.     

FT-IR, NIR-FT-Raman and gas phase infrared spectra of 3-aminoacetophenone by density functional theory and ab initio Hartree-Fock calculations

The gas phase infrared spectrum of 3-aminoacetophenone (3AAP) was measured in the range 5000-500cm(-1) and with a resolution of 0.5cm(-1). The Fourier transform Raman (FT-Raman) and Fourier transform infrared (FT-IR) spectra of 3AAP were recorded in the solid phase. Geometry optimizations were done without any constraint and several thermodynamic parameters were calculated for the minimum energy conformer at ab initio and density functional theory (DFT) levels invoking 6-311G(2df 2p) basis set and the results are compared with the experimental values. Harmonic-vibrational wavenumber was also calculated for the minimum energy conformer at ab initio and DFT levels using 6-31G(d,p) basis set and the results are compared with related molecules. With the help of specific scaling procedures, the observed vibrational wavenumbers in gas phase, FT-IR and FT-Raman spectra were analyzed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range, the error obtained was in general very low. The appropriate theoretical spectrogram for the FT-IR spectra of the title molecule is also constructed.     

Far infrared spectra, conformational equilibria, vibrational assignments, ab initio calculations and structural parameters for 2-bromoethanol

The far infrared spectrum from 370 to 50 cm⁻¹ of gaseous 2-bromoethanol, BrCH₂CH₂OH, was recorded at a resolution of 0.10 cm⁻¹. The fundamental O–H torsion of the more stable gauche (Gg′) conformer, where the capital G refers to internal rotation around the C–C bond and the lower case g to the internal rotation around the C–O bond, was observed as a series of Q-branch transitions beginning at 340 cm⁻¹. The corresponding O–H torsional modes were observed for two of the other high energy conformers, Tg (285 cm⁻¹) and Tt (234 cm⁻¹). The heavy atom asymmetric torsion (rotation around C–C bond) for the Gg′ conformer has been observed at 140 cm⁻¹. Variable temperature (−63 to −100°C) studies of the infrared spectra (4000–400 cm⁻¹) of the sample dissolved in liquid xenon have been recorded. From these data the enthalpy differences have been determined to be 411±40 cm⁻¹ (4.92±0.48 kJ/mol) for the Gg′/Tt and 315±40 cm⁻¹ (3.76±0.48 kJ/mol) for the Gg′/Tg, with the Gg′ conformer the most stable form. Additionally, the infrared spectrum of the gas, and Raman spectrum of the liquid phase are reported. The structural parameters, conformational stabilities, barriers to internal rotation and fundamental frequencies have been obtained from ab initio calculations utilizing different basis sets at the restricted Hartree–Fock or with full electron correlation by the perturbation method to second order. The theoretical results are compared to the experimental results when appropriate. Combining the ab initio calculations with the microwave rotational constants, r₀ adjusted parameters have been obtained for the three 2-haloethanols (F, Cl and Br) for the Gg′ conformers.     

An ab initio study on the geometries and vibrational frequencies of hydrazoic acid and methyl azide

The geometric parameters for hydrazoic acid and methyl azide were optimized at the HF/6-31G^** and MP2/6-31G^** levels and the vibrational frequencies of the compounds were calculated by use of these optimized geometries. The experimental frequencies are assigned on the basis of the calculated results. The effects of deutero-substitution and substitution of hydrogen in HN₃ by a methyl group are also discussed.     

Theoretical study on the adduct of chlorine trifluoride oxide and boron trifluoride—molecular and crystal structures,vibrational spectrum,and thermodynamic properties

To search for the most stable form and understand the relationship between the structure and property of the adduct of chlorine trifluoride oxide and boron trifluoride, various isomeric structures were constructed and optimized with the first principle methods. The most stable structure of the adduct has an ionic form. The vibrational spectra were calculated and assigned, and used to compute the standard thermodynamic properties. Molecular mechanics method was employed to predict the possible crystal packing of the adduct, and density functional theory method was used to refine the crystal structure and to calculate the energy band. The obtained band gap (3.40 eV) shows that the crystal is insensitive and stable under closed environment as was found experimentally. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

FT-IR, FT-Raman spectra, density functional computations of the vibrational spectra and molecular geometry of biomolecule 5-aminouracil

FT-IR and FT-Raman spectra of the biomolecule 5-aminouracil were recorded in the regions 400–4000 cm⁻¹ and 10–3500 cm⁻¹, respectively. The observed vibrational wavenumbers were analyzed and assigned to different normal modes of vibration of the molecule. Density functional calculations were performed to support wavenumber assignments of the observed bands. A comparison with the molecule of uracil was made, and specific scale factors were employed in the predicted wavenumbers of 5-aminouracil. With the purpose of study the important molecule 5-aminouracil, its equilibrium geometry and harmonic wavenumbers were calculated for the first time by the B3LYP DFT method. The vibrational wavenumbers were compared with IR and Raman experimental data. Also good reproduction of the experimental wavenumbers is obtained and the % error is very small. All the tautomeric forms of 5-aminouracil were determined and optimized. The dimer forms were also simulated. The energy, atomic charges and dipole moments were discussed and several general conclusions were underlined.     

Molecular structure and vibrational spectra of lepidine and 2-chlorolepidine by density functional theory and ab initio Hartree–Fock Calculations

The molecular geometry and vibrational frequencies of lepidine and 2-chlorolepidine in the ground state have been calculated by using the Hartree–Fock and density functional methods (B3LYP) with 6-31G (d) as the basis set. The optimized geometric bond lengths obtained by using B3LYP and bond angles obtained by HF that correspond to the experimental values of 2-cl-lepidine molecule were given. Comparison of the observed fundamental vibrational frequencies of lepidine and 2-chlorolepidine, and calculated results by density functional B3LYP and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock approach for molecular vibrational problems.     

Ab initio prediction of the vibrational spectra of the hydrogen‐bonded complexes between CO and HONO2

The vibrational characteristics (vibrational frequencies and infrared intensities) for free and complexed CO and HONO₂ have been predicted using ab initio calculations at SCF and MP2 levels with different basis sets and B3LYP/6?31G(d,p) calculations. The ab initio calculations show that the complexation between HONO₂ and CO leads to two stable structures: CO … HONO₂ (1A) and OC … HONO₂ (1B). The changes in the vibrational characteristics from free monomers to complexes have been estimated. It was established that the most sensitive to the complexation is the stretching O? H vibration. In agreement with the experiment, its vibrational frequency in the complexes is shifted to lower frequency (Δν = ?123 cm^?1). The magnitude of the wave number shift is indicative of relatively strong hydrogen‐bonded interaction. The ab initio calculations at different levels predict an increase of the infrared intensity of the stretching O? H vibration for structure 1A more than five times and for structure 1B more than nine times. The most consistent agreement between the computed values of the frequency shifts for structure 1B and those experimentally observed suggests that this structure is preferred. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

Experimental infrared spectra of matrix isolated complexes of HCl with 4-substituted pyridines. Evaluation of anharmonicity and matrix effects using data from ab initio calculations

Infrared spectra have been measured for HCl complexes with 4-cyanopyridine, 4-chloropyridine, pyridine and 4-methylpyridine isolated in argon and nitrogen matrices at about 12 K. The experimental spectra are dramatically different from computed MP2/6-31+G(d,p) harmonic spectra, a consequence of the anharmonicity of the potential energy surface in the hydrogen-bonding region. Comparisons of computed and experimental data suggest that the experimental spectra correspond to complexes with HCl distances that are much longer than the computed equilibrium distances. These longer distances, R_cor(HCl), are related to the average HCl distance in the ground vibrational state of the proton-stretching mode. The value of R_cor(HCl) determines values of three effective anharmonic force constants for the HCl stretch, the NH stretch and the coupling between them for each complex. The simulated anharmonic spectra obtained when these anharmonic force constants are used in place of the corresponding harmonic constants show spectral patterns with respect to both frequencies and intensities that are very similar to those observed in the experimental spectra obtained in Ar and N₂ matrices. 1D anharmonic potential curves related to the experimental spectra are presented. They provide insight into anharmonicity of the hydrogen-bonded proton stretch for these systems, and into the sensitivity of the potential energy surface to the environment.