Application of the TORO technique of 1H NMR to the structural analysis of cyclic peptide isomers having a slightly distorted symmetry from C2

The extended TORO technique was applied to the structural analysis of endo-D-Tyr-gramicidin S, cyclo(-Val-Orn-Leu-D-Phe-D-Tyr-Pro-Val-Orn-Leu-D-Phe-Pro-), which has a slightly distorted symmetry from C2, by the insertion of D-Tyr and equivalent alpha-proton chemical shifts in the 1H NMR spectrum. All NMR signals of the two dominant isomers of this antibiotic with trans-trans prolines were determined by using the extended TORO technique with TOCSY and ROESY spectra. This technique is generally applicable for distinguishing overlapped signals of alpha- and amide protons from the main chains of peptides.     

Improved resolution in two-dimensional 1H NMR spectra of peptides by band-selective, homonuclear decoupling during both the evolution and acquisition periods: application to characterization of the binding of peptides by heparin

Two-dimensional 1H NMR experiments that achieve band-selective, homonuclear decoupling in both the indirectly detected F1 and directly detected F2 dimensions were used to assign the highly overlapped 1H NMR spectrum of the peptide Ac-SRGKARVRAKVKDQTK-NH2, both free in solution and bound to heparin. Band-selective, homonuclear decoupling during the evolution period was achieved using a double pulsed field gradient spin-echo (DPFGSE) with semi-selective shaped pulses; band-selective, homonuclear decoupling during the acquisition period was achieved by time-shared semi-selective shaped pulse decoupling. Regular TOCSY, ROESY and NOESY spectra and TOCSY, ROESY and NOESY spectra measured with band-selective, homonuclear decoupling in the evolution (F1) dimension (BASHD-TOCSY, ROESY and NOESY spectra) and with band-selective, homonuclear decoupling in both the F1 and F2 dimensions (D-(or Double)-BASHD-TOCSY, ROESY and NOESY spectra) are reported and compared for the peptide and its heparin complex. Complete assignment of the 1H-NMR spectra of the free and heparin-complexed peptide was achieved with the high resolution of the D-BASHD-TOCSY, ROESY and NOESY spectra. Characterization of the heparin-complexed peptide is of interest because of the ability of the peptide to neutralize the anticoagulant activity of heparin.     

Construction of Chemical‐Responsive Supramolecular Hydrogels from Guest‐Modified Cyclodextrins

A methodology for preparing supramolecular hydrogels from guest‐modified cyclodextrins (CDs) based on the host–guest and hydrogen‐bonding interactions of CDs is presented. Four types of modified CDs were synthesized to understand better the gelation mechanism. The 2D ROESY NMR spectrum of β‐CD‐AmTNB (Am=amino, TNB=trinitrobenzene) reveals that the TNB group was included in the β‐CD cavity. Pulsed field gradient NMR (PFG NMR) spectroscopy and AFM show that β‐CD‐AmTNB formed a supramolecular polymer in aqueous solution through head‐to‐tail stacking. Although β‐CD‐AmTNB did not produce a hydrogel due to insufficient growth of supramolecular polymers, β‐CD‐CiAmTNB (Ci=cinnamoyl) formed supramolecular fibrils through host–guest interactions. Hydrogen bonds between the cross‐linked fibrils resulted in the hydrogel, which displayed excellent chemical‐responsive properties. Gel‐to‐sol transitions occurred by adding 1‐adamantane carboxylic acid (AdCA) or urea. ¹H NMR and induced circular dichroism (ICD) spectra reveal that AdCA released the guest parts from the CD cavity and that urea acts as a denaturing agent to break the hydrogen bonds between CDs. The hydrogel was also destroyed by adding β‐CD, which acts as the competitive host to reduce the fibrils. Furthermore, the gel changed to a sol by adding methyl orange (MO) as a guest compound, but the gel reappeared upon addition of α‐CD, which is a stronger host for MO.     

Modified,pulse field gradient‐enhanced inverse‐detected HOESY pulse sequence for reduction of t1 spectral artifacts

A modified pulse field gradient (PFG)‐enhanced inverse (¹H)‐detected 2D heteronuclear Overhauser effect spectroscopy (HOESY) pulse sequence is demonstrated for the acquisition of ¹H–⁷Li heteronuclear correlations. In practice, t₁ noise artifacts were observed using the original PFG‐enhanced inverse‐detected HOESY pulse sequence, which degraded the ability to detect accurately weak heteronuclear Overhauser signals. Experimentally it is shown that a simple modification of the PFG‐enhanced inverse‐detected HOESY pulse sequence greatly reduces the t₁ noise that may result from variations in magnetic susceptibility, and allows improved detection of weak ¹H–⁷Li correlations. Copyright © 2002 John Wiley & Sons, Ltd.     

Real‐time homonuclear broadband and band‐selective decoupled pure‐shift ROESY

Unambiguous spectral assignments in ¹H solution‐state NMR are central, for accurate structural elucidation of complex molecules, which is often hampered by signal overlap, primarily because of scalar coupling multiplets, even at typical high magnetic fields. The recent advances in homodecoupling methods have shown powerful means of achieving high resolution pure‐shift ¹H spectra in 1D and also in 2D J‐correlated experiments, by effectively collapsing the multiplet structures. The present work extends these decoupling strategies to through‐space correlation experiments as well and describes two new pure‐shift ROESY pulse schemes with homodecoupling during acquisition, viz., homodecoupled broadband (HOBB)‐ROESY and homodecoupled band‐selective (HOBS)‐ROESY. Furthermore, the ROESY blocks suppress the undesired interferences of TOCSY cross peaks and other offsets. Despite the reduced signal sensitivity and prolonged experimental times, the HOBB‐ROESY is particularly useful for molecules that exhibit an extensive scalar coupling network spread over the entire ¹H chemical shift range, such as natural/synthetic organic molecules. On the other hand, the HOBS‐ROESY is useful for molecules that exhibit well‐separated chemical shift regions such as peptides (NH, Hα and side‐chain protons). The HOBS‐ROESY sensitivities are comparable with the conventional ROESY, thereby saves the experimental time significantly. The power of these pure‐shift ROESY sequences is demonstrated for two different organic molecules, wherein complex conventional ROE cross peaks are greatly simplified with high resolution and sensitivity. The enhanced resolution allows deriving possibly more numbers of ROEs with better accuracy, thereby facilitating superior means of structural characterization of medium‐size molecules. Copyright © 2014 John Wiley & Sons, Ltd.     

Characterization of three saponins from a fraction using 1D DOSY as a solvent signal suppression tool. Agabrittonosides E–F. Furostane Saponins from Agave brittoniana Trel. spp. Brachypus

A careful NMR analysis, especially by 1D TOCSY and 1D ROESY, of a refined saponin fraction allowed us to determine the structure of three saponins from a polar extract of Agave brittoniana Trel. spp. Brachypus leaves. The use of 1D DOSY for the suppression of the solvent signal was useful to obtain the chemical shifts of anomeric signals. A full assignment of the ¹H and ¹³C spectral data for the new saponins, agabrittonosides E–F (1–2) and the well‐known Karatavioside C (3) and their methoxyl derivatives, is reported. The structures were established using a combination of 1D and 2D (¹H, ¹H‐COSY, TOCSY, ROESY, g‐HSQC, g‐HMBC and g‐HSQC‐TOCSY) NMR techniques and ESI–MS. In addition, the methoxylation of these furostane saponins in the presence of MeOH was studied. Copyright © 2010 John Wiley & Sons, Ltd.     

Improvement of double pulsed field gradient spin‐echo ROESY experiments for identification of bound waters

A novel pulse sequence incorporating the double pulsed field gradient spin‐echo (DPFGSE) and the gradient‐tailored excitation WATERGATE techniques is presented that has particular use for identifying bound waters in ¹⁵N‐labeled macromolecules. This sequence, DPFGSE–ROESY–HSQC, affords greater spectral sensitivity than the DPFGSE–ROESY–HMQC experiment which was previously presented and is consequently useful for rapidly obtaining reliable information for characterizing macromolecular bound water molecules. A significant enhancement in the sensitivity is achieved by using the gradient‐tailored excitation WATERGATE sequence in the reverse INEPT step as it allows the use of much higher receiver gains. Since coherence selection is not used, the sequence has improved sensitivity together with less spectral artifacts. The advantage of this pulse sequence is illustrated using ¹⁵N‐labeled ribonuclease T₁. Copyright © 2003 John Wiley & Sons, Ltd.     

1H and 13C spectral assignment of naphtho[2′,1′:5,6]‐naphtho[2′,1′:4,5]thieno[2,3‐c]quinoline using the IDR‐GHSQC‐TOCSY experiment

The assignment of the NMR spectra of the polynuclear heteroaromatic naphtho[2′,1′:5,6]naphtho‐[2′,1′:4,5]thieno[2,3‐c]quinoline is reported. The analysis was based on the homonuclear ROESY, heteronuclear direct GHSQC, IDR‐GHSQC‐TOCSY, and long‐range GHMBC experiments. The complete ¹H and ¹³C shift assignments are reported.     

Giant macrolactams based on β-sheet peptides

This paper reports the use of natural amino acids, the tripeptide β-strand mimic Hao, and the β-turn mimic δ-linked ornithine to generate water-soluble 54-, 78-, and 102-membered-ring macrolactams. These giant macrocycles were efficiently prepared by synthesis of the corresponding protected linear peptides, followed by solution-phase cyclization and deprotection. The protected linear peptide precursors were synthesized on 2-chlorotrityl chloride resin by conventional Fmoc-based solid-phase peptide synthesis. Macrocyclization was typically performed using HCTU and N,N-diisopropylethylamine in DMF at ca. 0.5 mM concentration. The macrocycles were isolated in 13-45% overall yield after HPLC purification and lyophilization. 1D, 2D TOCSY, and 2D ROESY (1)H NMR studies of the 54- and 78-membered-ring macrolactams establish that these compounds fold to form β-sheet structures in aqueous solutions.     

Three New Pregnane Glycosides from Marsdenia tinctoria

Three new pregnane glycosides, tinctorosides A–C ( 1 – 3 , resp.), together with one known pregnane glycoside, stephanoside B ( 4 ), were isolated from the stems of Marsdenia tinctoria R. Br . (Asclepiadaceae). Their structures were elucidated by extensive spectral methods, especially 2D‐NMR experiments (¹H,¹H‐COSY, HSQC, HMBC, TOCSY, HSQC‐TOCSY, and ROESY), and chemical evidence.     

2D Selective‐TOCSY‐DQFCOSY Experiment for Identification of Individual Sugar Components in Oligosaccharides

In this paper, we describe an improved 2D selective‐TOCSY‐COSY experiment for the unambiguous assignment of an individual sugar component in oligosaccharides. We used a DQFCOSY with a pulsed‐field gradient instead of a conventional COSY in this improved experiment. The network of proton signals for a selected sugar in an oligosaccharide is observed as the diagonal peaks in the 2D spectrum by use of the first TOCSY period, and the correlation signals between J‐coupled neighboring protons are clearly observed as the cross peak, including the signals observed close to the diagonal peaks by the second DQFCOSY development. Even when the signals do not appear in a well‐separated form of a 1D spectrum, unambiguous sequential assignment of the proton signals of individual sugar components in an oligosaccharide is achieved by this method.     

Assignment of pH‐dependent NMR spectra of the scorpiand macrocycle: an application of titration profiles and spectral linewidths

Routine homo‐ and heteronuclear 2D NMR experiments (COSY, HMQC, TOCSY and ROESY) were performed for the complex macrocyclic pentaamine ligand 1‐(2′‐aminoethyl)‐1,4,8,11‐tetraazacyclotetradecane ( 1 , scorpiand), derived from 1,4,8,11‐tetraazacyclotetradecane (cyclam). However, some its ¹³C and ¹H resonances were distinguished only based on the similarity between profiles of relevant pH–chemical shift plots and/or linewidth considerations. Following this empirical method relying on the assumption that titration curves of nuclei in comparable chemical environments have comparable shapes, it was possible to assign all chemical shifts (¹³C, pH 0.25–13.4; ¹H, pH 10–11.5) for some different protonated species H_n 1 ⁿ⁺. A multiple experimental approach used for recognizing their NMR signals is offered as a general assignment procedure in the case of polyazamacrocycles. Copyright © 2002 John Wiley & Sons, Ltd.     

NMR studies on 1,2‐dihydro‐2‐(4‐aminophenyl)‐4‐[4‐(4‐aminophenoxy)‐4‐phenyl]‐(2H)phthalazin‐1‐one

An unsymmetrical heterocyclic diamine, 1,2‐dihydro‐2‐(4‐aminophenyl)‐4‐[4‐(4‐aminophenoxy)‐4‐phenyl]‐(2H)phthalazin‐1‐one, was synthesized. Its ¹H and ¹³C NMR spectra were completely assigned by utilizing the two‐dimensional heteronuclear ¹³C–¹H multiple‐bond coherence (HMBC) spectroscopy, and heteronuclear ¹³C–¹H one‐bond correlation spectroscopy, homonuclear shift correlation spectroscopy (H,H‐COSY) and rotating frame Overhauser enhancement spectroscopy (ROESY). The structure of the compound was shown to be the phthalazinone rather than the phthalazine ether from cross peaks and chemical shifts of the protons. Copyright © 2002 John Wiley & Sons, Ltd.     

Can the Theoretical Fitting of the Proton‐Nuclear‐Magnetic‐Relaxation‐Dispersion (Proton NMRD) Curves of Paramagnetic Complexes Be Improved by Independent Measurement of Their Self‐Diffusion Coefficients?

The self‐diffusion (D_c) coefficients of various lanthanum(III) diamagnetic analogues of open‐chain and macrocyclic complexes of gadolinium used as MRI contrast agents were determined in dilute aqueous solutions (3–31 mM ) by pulsed‐field‐gradient (PFG) high‐resolution ¹H‐NMR spectroscopy. The self‐diffusion coefficient of H₂O (D_w) was obtained for the same samples to derive the relative diffusion constant, a parameter involved in the outersphere paramagnetic‐relaxation mechanism. The results agree with an averaged relative diffusion constant of 2.5 (±0.1)×10^?9 and of 3.3 (±0.1)×10^?9 m² s^?1 at 25 and 37°, respectively, for 'small' contrast agents (M_r 500–750 g/mol), and with the value of bulk H₂O (2.2×10^?9 and 2.9×10^?9 m² s^?1 at 25° and at 37°, respectively) for larger complexes. The use of the measured values of D_c for the theoretical fitting of proton NMRD curves of gadolinium complexes shows that the rotational correlation times (τ_R) are very close to those already reported. However, differences in the electronic relaxation time (τ_SO) at very low field and in the correlation time (τ_V) related to electronic relaxation were found.     

Spectroscopic separation of 13C NMR spectra of complex isomeric mixtures by the CSSF‐TOCSY‐INEPT experiment

Isomeric mixtures from synthetic or natural origins can pose fundamental challenges for their chromatographic separation and spectroscopic identification. A novel 1D selective NMR experiment, chemical shift selective filter (CSSF)‐TOCSY‐INEPT, is presented that allows the extraction of ¹³C NMR subspectra of discrete isomers in complex mixtures without physical separation. This is achieved via CSS excitation of proton signals in the ¹H NMR mixture spectrum, propagation of the selectivity by polarization transfer within coupled ¹H spins, and subsequent relaying of the magnetization from ¹H to ¹³C by direct INEPT transfer to generate ¹³C NMR subspectra. Simple consolidation of the subspectra yields ¹³C NMR spectra for individual isomers. Alternatively, CSSF‐INEPT with heteronuclear long‐range transfer can correlate the isolated networks of coupled spins and therefore facilitate the reconstruction of the ¹³C NMR spectra for isomers containing multiple spin systems. A proof‐of‐principle validation of the CSSF‐TOCSY‐INEPT experiment is demonstrated on three mixtures with different spectral and structural complexities. The results show that CSSF‐TOCSY‐INEPT is a versatile, powerful tool for deconvoluting isomeric mixtures within the NMR tube with unprecedented resolution and offers unique, unambiguous spectral information for structure elucidation. Copyright © 2014 John Wiley & Sons, Ltd.     

Co‐Micellization Investigated by Pulsed Field Gradient‐NMR Spectroscopy

Summary: Pulse field gradient‐NMR (PFG‐NMR) spectroscopy is determined to be a more suitable method for the investigation of self‐association processes in multi‐component (co)polymer systems than light scattering methods. Here the co‐micellization of mixtures of the diblock copolymer polystyrene‐block‐(hydrogenated polyisoprene) (PS‐HPI) and the triblock copolymer polystyrene‐block‐(hydrogenated polybutadiene)‐block‐polystyrene (PS‐HPB‐PS) in decane is investigated by PFG‐NMR spectroscopy and the results compared to those experimentally determined by static (SLS) and dynamic (DLS) light scattering. As expected, diffusion coefficients determined by PFG‐NMR spectroscopy are systematically lower than those from DLS. The PFG‐NMR measurements provided higher values of cequation/tex2gif-stack-1.gif(X)/c_tot than the model calculations, illustrating that the basic assumption used in the calculations, i.e., that the number concentration of co‐micelles in mixed solutions follows the dilution with a triblock copolymer solution, 1 − X, is not fully valid at high X (weight fraction of PS‐HPB) values.

Comparison of PFG‐NMR spectroscopy and SLS (cequation/tex2gif-stack-2.gif/c_tot = equilibrium concentration of free PS‐HPB‐PS over the total concentration of copolymers in solution, X = weight fraction of PS‐HPB).     

Structure elucidation of [1,3]oxazolo[4,5‐e][2,1]benzisoxazole and naphtho[1,2‐d][1,3]‐ and phenanthro[9,10‐d]oxazoles using gradient selected gHMBC,gHMQC and gHMQC‐TOCSY NMR techniques

Structure elucidation of compounds in the benzisoxazole series ( 1 – 6 ) and naphtho[1,2‐d][1,3]‐ ( 7 – 10 ) and phenanthro[9,10‐d][1,3]oxazole ( 11 – 14 ) series was accomplished using extensive 2D NMR spectroscopic studies including ¹H–¹H COSY, long‐ range ¹H–¹H COSY, ¹H–¹³C COSY, gHMQC, gHMBC and gHMQC‐TOCSY experiments. The distinction between oxazole and isoxazole rings was made on the basis of the magnitude of heteronuclear one‐bond ¹J_{C2, H2} (or ¹J_{C3, H3}) coupling constants. Complete analysis of the ¹H NMR spectra of 11 – 14 was achieved by iterative calculations. Gradient selected gHMQC‐TOCSY spectra of phenanthro[9,10‐d][1,3]oxazoles 11 – 14 were obtained at different mixing times (12, 24, 36, 48 and 80 ms) to identify the spin system where the protons of phenanthrene ring at H‐5, H‐6 and at H‐9 and H‐7 and H‐8 were highly overlapping. Copyright © 2003 John Wiley & Sons, Ltd.     

Self‐diffusion in a hyaluronic acid–albumin–water system as studied by NMR

Hyaluronic acid (HA) is an anionic biopolymer that is present in many tissues and can be involved in cancerous neoformations. HA can form complexes with proteins (particularly, serum albumin) in the body. However, HA structures and processes involving HA have not been extensively studied by NMR because the molecule's rigid structure makes these studies problematic. In the current work, self‐diffusion of HA and bovine serum albumin (BSA), and water in solutions was measured by ¹H pulsed field gradient NMR (PFG NMR) with a focus on the HA‐BSA‐D₂O systems at various concentrations of BSA and HA. It was shown that in the presence of even a small amount of HA, the self‐diffusion coefficient (SDC) of BSA decreases. To explain this fact, three hypotheses were proposed and analyzed. The first one was based on the effect of slowing down of water mobility in the presence of HA. The second hypothesis suggested an effect of mechanical collisions of BSA with HA molecules. The third hypothesized that BSA and HA molecules form a complex where BSA molecules reduced in mobility. It was shown that the third mechanism is the most likely. The state of the BSA molecules in the BSA‐HA‐D₂O system corresponds to a ‘fast exchange’ condition from the NMR point of view: BSA molecules reside in the ‘free’ and ‘bound’ (with HA) states for much shorter time than the diffusion time of the PFG NMR experiment, 7 ms. The fractions of ‘bound’ BSA molecules in the BSA‐HA complex were estimated. Copyright © 2012 John Wiley & Sons, Ltd.     

Band‐selective excited ultrahigh resolution PSYCHE‐TOCSY: fast screening of organic molecules and complex mixtures

Precise assignments of ¹H atomic sites and establishment of their through‐bond COSY or TOCSY connectivity are crucial for molecular structural characterization by using ¹H NMR spectroscopy. However, this exercise is often hampered by signal overlap, primarily because of ¹H–¹H scalar coupling multiplets, even at typical high magnetic fields. The recent developments in homodecoupling strategies for effectively suppressing the coupling multiplets into nice singlets (pure‐shift), particularly, Morris's advanced broadband pure‐shift yielded by chirp excitation (PSYCHE) decoupling and ultrahigh resolution PSYCHE‐TOCSY schemes, have shown new possibilities for unambiguous structural elucidation of complex organic molecules. The superior broadband PSYCHE‐TOCSY exhibits enhanced performance over the earlier TOCSY methods, which however warrants prolonged experimental times due to the requirement of large number of dwell increments along the indirect dimension. Herein, we present fast and band‐selective analog of the broadband PSYCHE‐TOCSY, which is useful for analyzing complex organic molecules that exhibit characteristic yet crowded spectral regions. The simple pulse scheme relies on band‐selective excitation (BSE) followed by PSYCHE homodecoupling in the indirect dimension. The BSE‐PSYCHE‐TOCSY has been exemplified for Estradiol and a complex carbohydrate mixture comprised of six constituents of closely comparable molecular weights. The experimental times are greatly reduced viz., ~20 fold for Estradiol and ~10 fold for carbohydrate mixture, with respect to the broadband PSYCHE‐TOCSY. Furthermore, unlike the earlier homonuclear band‐selective decoupling, the BSE‐PSYCHE‐decoupling provides fully decoupled pure‐shift spectra for all the individual chemical sites within the excited band. The BSE‐PSYCHE‐TOCSY is expected to have significant potential for quick screening of complex organic molecules and mixtures at ultrahigh resolution. Copyright © 2015 John Wiley & Sons, Ltd.     

Petrorhagiosides A – D,New γ‐Pyrone Derivatives from Petrorhagia saxifraga Link

Four novel γ‐pyrone (=4H‐pyran‐4‐one) metabolites, petrorhagiosides A–D, along with four known analogs, have been isolated from the MeOH extract of Petrorhagia saxifraga, a perennial herbaceous plant typical of Mediterranean vegetation. The structures of the new compounds were established on the basis of extensive spectroscopic analyses including 1D‐ an 2D‐NMR (¹H,¹H‐DQ‐COSY, TOCSY, HSQC, CIGAR‐HMBC, and HSQC‐TOCSY) experiments.