A novel Barton decarboxylation produces a 1,4-phenyl radical rearrangement domino reaction

A novel 1,4-Phenyl radical rearrangement (1,4-PhRR) is described in a typical Barton decarboxylation procedure. While carrying out this reaction in presence of a N,N-disubstituted β-amino acid derivative, the decarboxyphenyl rearranged derivative is obtained, as well as in presence of β-N,N-acylamide. On the other hand, secondary amines give the β-lactam derivative without rearrangement, as well as N-Fmoc derivatives give the normal decarboxylation reaction. In regards of amines which are far away from the carboxylic group, such as δ-amino acid derivatives, the reaction occur through a typical Barton decarboxylation without rearrangement. The diversity of the reaction proves synthetic usefulness paving the way to interesting biologically active compounds.     

Thymol bioactivity: A review focusing on practical applications

Thymol is a natural volatile monoterpenoid phenol that is the main active ingredient of oil extracted from species Thymus vulgaris L., commonly known as thyme, and other plants such as Ocimum gratissimum L., Origanum L., Carum copticum L., different species of the genus Satureja L., Oliveria decumbens Vent, and many others. It is a versatile molecule with a wide variety of practical applications such as medical, dentistry, veterinary, food, and agrochemicals, among others. Its pharmacological applications have been the most investigated and reported, focusing on its prominent antimicrobial, antioxidant, anti-inflammatory, cicatrizing activities. Furthermore, it is noteworthy that the research on its agricultural applications has increased, highlighting its uses as a natural agrochemical and preservative to safeguard foods from pathogenic microorganisms both in sowing and storage, which could have a beneficial effect on human health and the environment. Research has also been reported on its activity as an insecticide, acaricide, and animal repellent. This review summarizes important aspects of thymol such as its bioavailability, synthesis, and biological activities, with special interest in practical applications.     

Anti-Helicobacter pylori Activity of Artemisia ludoviciana subsp. mexicana and Two of Its Bioactive Components,Estafiatin and Eupatilin

Artemisia ludoviciana subsp. mexicana has been traditionally used for the treatment of digestive ailments such as gastritis, whose main etiological agent is Helicobacter pylori. In a previous screening study, the aqueous extract exhibited a good in vitro anti-H. pylori activity. With the aim of determining the efficacy of this species as a treatment for H. pylori related diseases and finding bioactive compounds, its aqueous extract was subjected to solvent partitioning and the fractions obtained were tested for their in vitro anti-H. pylori effect, as well as for their in vivo gastroprotective and anti-inflammatory activities. The aqueous extract showed a MIC = 250 µg/mL. No acute toxicity was induced in mice. A gastroprotection of 69.8 ± 3.8%, as well as anti-inflammatory effects of 47.6 ± 12.4% and 38.8 ± 10.2% (by oral and topical administration, respectively), were attained. Estafiatin and eupatilin were isolated and exhibited anti-H. pylori activity with MBCs of 15.6 and 31.2 µg/mL, respectively. The finding that A. ludoviciana aqueous extract has significant anti-H. pylori, gastroprotective and anti-inflammatory activities is a relevant contribution to the ethnopharmacological knowledge of this species. This work is the first report about the in vivo gastroprotective activity of A. ludoviciana and the anti-H. pylori activity of eupatilin and estafiatin.     

Carboxylic acids as promoters for internucleotide-bond formation via condensation of a nucleoside phosphoramidite and a nucleoside: relationship between the acidity and the activity of the promoter

The relationship between the activity and the acidity of a carboxylic acid as a promoter for condensation of a nucleoside phosphoramidite and a nucleoside was investigated. The investigation revealed that the acid, the pKa value of which in acetonitrile is less than 18, is capable of promoting the condensation reaction, and acid with a pKa value outside of this range does not serve as a promoter. In carboxylic acids serving as promoters, the ones with higher acidity generally show greater activity. In particular, acids with a pKa value less than ca. 16 (measured by a potentiometric method), such as trichloroacetic acid (pKa=10.6), trifluoroacetic acid (pKa=12.7), dichloroacetic acid (pKa=13.2 or 15.8), and 2,4-dinitrobenzoic acid (pKa=16.1), show high levels of activity higher than that of conventionally used 1H-tetrazole. These carboxylic acids generally serve as excellent promoters for both the liquid-phase and the solid-phase synthesis of oligonucleotides via phosphoramidite method.     

The mechanism of N-haloamide promoted electrophilic additions. high regio and stereoselectivity in the conversion of 2-tert-butyl-3,6-dihydro-2H-pyran into bromohydrins and in the opening of the corresponding epoxides

The reactions of cis- and trans-2-tert-butyl-4,5-epoxytetrahydropyran with HBr and with LAH have been examined as a model for the nucleophilic step of the reaction of the corresponding olefin with NBA in aqueous dioxane. A remarkable 90:10 preference for electrophilic attack syn to the tert -butyl group in the NBA reaction is found and shows that the two epoxides, as well as the intermediate epibromonium ions, undergo nucleophilic attack with high preference for diaxial opening, even when this requires reaction at carbon 5, which is more subject than carbon 4 to the unfavourable inductive effect of the pyran ring oxygen. These results constitute a further proof in favour of a mechanism of N-haloamide promoted electrophilic additions in which the electrophilic step is rapidly reversible and product composition is determined during the nucleophilic step.     

Structure and biosynthetic implication of (S)-NHAB, a novel shunt product, from a disruptant of the actVI-ORFA gene for actinorhodin biosynthesis in Streptomyces coelicolor A3(2)

A novel shunt product was isolated from a disruptant of the actVI-ORFA gene involved in the biosynthesis of actinorhodin (ACT) in Streptomyces coelicolor A3(2). Its structure was elucidated as 1,4-naphthoquinone-8-hydroxy-3-[3(S)-acetoxy-butyric acid], (S)-NHAB, based on NMR, MS, and CD spectroscopic data as well as a single crystal X-ray crystallographic analysis. The formation of (S)-NHAB involves a retro-Claisen type C-C bond cleavage of an ACT biosynthetic intermediate. Feeding experiments with [1-¹³C] and [2-¹³C] acetates indicated its biosynthetic origin as a single octaketide chain. The relevant gene product, Act-ORFA, which is a functionally unknown protein, is proposed to play a regulatory role related to the multi-enzymatic steps to ACT production, based on the metabolic profile of its disruptant and the wide distribution of actVI-ORFA homologues in the gene clusters for Streptomyces aromatic polyketides.     

Identification and quantification of 13 components in Angelica sinensis (Danggui) by gas chromatography-mass spectrometry coupled with pressurized liquid extraction

Angelica sinensis (Danggui in Chinese), a well-known traditional Chinese medicine, is also used as a health food product for women's care in Europe and America. Therefore, the demand for Danggui is enormous throughout the world. Due to the shortage of Angelica sinensis, Angelica acutiloba and Angelica gigas are commonly used as the substitutes of Danggui in the market of southeast Asia. However, the three common Angelica roots showed variation in their genetic and chemical composition. Up to date, it is thought that ferulic acid, ligustilide and other phthalides such as butylidenephthalide are the biologically active components of Danggui. In this paper, the contents of 13 compounds including ferulic acid, Z-ligustilide, E-ligustilide, Z-butylidenephthalide, E-butylidenephthalide, 3-butylphthalide, 3-butylidene-4-hydroxyphthalide, senkyunolide A, 6,7-epoxyligustilide, senkyunolide F, senkyunolide H, senkyunolide I, and 6,7-dihydroxyligustilide were determined or estimated by using gas chromatography-mass spectrometry (GC-MS) coupled with pressurized liquid extraction (PLE). The results showed that GC-MS coupled with PLE offered a simple, rapid and high sensitive method to analysis of components in Angelica root. And the contents of investigated compounds in Angelica sinensis, Angelica acutiloba and Angelica gigas, which are used as Danggui in China, Japan and Korea, respectively, were highly variant. It is thought that interaction of multiple chemical compounds contributes to the therapeutic effects of Chinese medicines. However, the overall clinical efficacy of these different Danggui has not been determined. Therefore, comparison of chemical components and pharmacological activities of different Angelica root is helpful to elucidate the mechanism of therapeutic effects of Danggui.     

The structure of low temperature triplet energy traps in organic solids from pmdr spectroscopy 11. 1,3,5-Trichloro and hexachlorobenzenes

The new technique of polarized microwave PMDR spectroscopy is used to determine the structure of the low temperature (1.6 – 4.2°K) triplet energy traps. The structure of 1.3,5-trichlorobenzene (Tri-CB) and hexachlorobenzene (HCB) molecules in hexamethylbenzene (HMB) host as well as in their own neat crystals (present as x-traps) is determined from the linear polarization characteristics of their optically detected microwave zerofield (zf) transitions as well as from the analysis of their phosphorescence emission. The former technique gives the direction of the principal magnetic axes of these trap molecules in the crystal as well as the relative order of their zf levels.ln HMB host, deviation from trigonal symmetry is found to be only slight for HCB and absent for Tri-CB. ln the neat crystals, large deviations from trigonal symmetry are observed for the traps of both HCB and Tri-CB. In HCB x- traps, the HCB molecule is found to be slightly contracted along the CCl axis near parallel to the c′ crystal axes. Deviation From planarity is also strongly suggested by the large value of the zf parameter D. ln addition, the principal magnetic axis of the 2|E| moment for HCB x-traps is found to lie only 5° off the molecular N axis. The |D| + |E| and |D| — |E| moments, however, are 15° away from the A and B molecular axis, respectively.In Tri-CB neat crystal. two traps are observed optically with their phosphorescence origins 10 cm^?1 apart. The zf parameter E is found to have a non-zero value and is opposite in sign for the two traps. If the distortion is to be blamed on pseudo-Jahn-Teller forces, the results lead to the conclusion that the x-(shallow) trap is contracted while the y- (deep) trap is expanded along an in-plane axis going through the CCl bonds near parallel to the a axis of the Tri-CB crystal. The plane containing the |D| + |E| and |D| — |E| moments of the x-trap suffers a rotation around the N-molecular axis, which is almost parallel to the 2|E| moment. Th |D| + |E| moment is 10° off the A axis and the |D| — |E| moment is 10° off the B axis. The 2|E| transition moment of the y-trap lies off the molecular N axis and the plane containing the |D| + |E| and |D| — |E| moments moves upward from theThe results of these and other studies suggest that low temperature trapping in neat crystals of this type results from crystal induced geometrical and orientational changes in the molecules at point defects. The observed traps are those molecules for which the crystal field induced deformation leads to a lowering in their singlet-triplet transition energy as compared with that for the host lattice.     

Chlorine-isotopic exchange between lithium chloride and substituted 2-chloropyridine in homogeneous solution

The kinetics of chlorine-isotopic exchange between lithium chloride-36 and cyano- and nitro- substituted 2-chloropyridines were measured in sulpholane, acetone or methanol solution. Activating effects of ortho-nitro and ortho-azu substitution are compared: a nitro-group is 50 × as activating as the aza-group in the p-nitrochlorobenzene system, where as it is the aza-function which is 3 times as activating as the nitro group in the o-nitrochlorobenzene system. The effect of Me substituents placed ortho to an activating nitro-group was studied by comparing 2-chloro-3-cyano-5-nitropyridine and its 6-methyl- and 4,6-dimethyl-derivatives.     

Interaction of polyelectrolytes with oppositely charged micelles studied by fluorescence and liquid chromatography

It is studied by spectrofluorimetry the association of ionized cationic micelles (cetyltrimethylammonium bromide, CTAB) with oppositely charged polyelectrolyte [sodium poly(styrenesulfonate), PSSNa]. CTAB provokes a change in the fluorescence intensity emitted by PSSNa. The investigated surfactants form micelle-like aggregates before critical micellar concentration (CMC). Two approaches (binding and partition equilibrium) are used to obtain the association constant, K_A, number of CTAB molecules in a binding site, N, and apparent partition coefficient, Γ. Analysis of the parameters as a function of polymer concentration and ionic strength μ is performed. The effect of μ shows an enhancement in association as μ decreases. Furthermore as CMC decreases with μ, experiments have to be performed at rather different CMCs. This causes K_A and Γ to increase with μ. The adsorption of polyelectrolyte on the micelle is also studied at the greatest μ using high-performance liquid chromatography (size-exclusion) for the first time, obtaining results similar to those found using spectrofluorimetry.     

Optical potential calculations for molecular collisions

The Feshbach optical formalism is applied to elastic, nonreactive atom-diatom scattering on a single potential energy surface. The optical potential depends on GQ, the resolvent of E-QHQ, where Q projects onto open as well as closed channels. A method for generating GQ is developed which goes beyond the free-space approximation by partitioning the radial part of the intermolecular separation into a set of intervals, on each of which the projected interaction QVQ is represented by a constant diagonal form. The resulting GQ is used in calculations on a model collinear system. The calculations are carried out with various approximations on the full nonlocal optical potential equation for Pψ Emphasis is placed on two of these, one of which is characterized by a local homogeneous equation for Pψ, and the other by a local inhomogeneous equation for Pψ.     

Eichfunktion und analysenfehler in der spektrochemischen Analytik—I. Regression bei konstanter standardabweichung für die meßgröße

For spectrochemical analyses, calibration is a basic operation generally necessary for quantitative determinations. It yields the calibration function and by inversion the analytical function which is not directly accessible.—In the following, a scheme is developed in order to find-according to different methods of analysis-the respective suitable calibration function: it should give an expectable standard deviation as small as possible for the estimated content, it should, if possible, be linear and it should be applicable in a range of content as large as possible. The condition of Part I of this paper is the constant standard deviation for the measuring quantity in this range.-The scheme is examined by five analytical examples: for trace analyses (OES-ICP and AAS) the simple relationship between the intensity I and the concentration c is linear anyhow and yields a constant absolute standard deviation not dependent on the trace content. For analyses over a large range of concentration, a double-logarithmic transformation leads to linearity and constant relative standard deviation (OES with Laser). If physical matrix effects are existing, for example in surface analysis (ISS) the ‘binary-ratio method’ is recommended; in this case, the relative standard deviation is proportional to (1 - c). For XRF of main and additional components, the non-linear regression of the equation of Beattie and Brissey is to be realized with √I-values.     

miR-98 suppresses melanoma metastasis through a negative feedback loop with its target gene IL-6

Dysregulated microRNA (miRNA) expression has a critical role in tumor development and metastasis. However, the mechanism by which miRNAs control melanoma metastasis is unknown. Here, we report reduced miR-98 expression in melanoma tissues with increasing tumor stage as well as metastasis; its expression is also negatively associated with melanoma patient survival. Furthermore, we demonstrate that miR-98 inhibits melanoma cell migration in vitro as well as metastatic tumor size in vivo. We also found that IL-6 is a target gene of miR-98, and IL-6 represses miR-98 levels via the Stat3-NF-κB-lin28B pathway. In an in vivo melanoma model, we demonstrate that miR-98 reduces melanoma metastasis and increases survival in part by reducing IL-6 levels; it also decreases Stat3 and p65 phosphorylation as well as lin28B mRNA levels. These results suggest that miR-98 inhibits melanoma metastasis in part through a novel miR-98-IL-6-negative feedback loop.     

Evaluation of the In Vitro Antiparasitic Effect of the Essential Oil of Cymbopogon winterianus and Its Chemical Composition Analysis

Cymbopogon winterianus, known as “citronella grass”, is an important aromatic and medicinal tropical herbaceous plant. The essential oil of C. winterianus (EOCw) is popularly used to play an important role in improving human health due to its potential as a bioactive component. The present study aimed to identify the components of the essential oil of C. winterianus and verify its leishmanicidal and trypanocidal potential, as well as the cytotoxicity in mammalian cells, in vitro. The EOCw had geraniol (42.13%), citronellal (17.31%), and citronellol (16.91%) as major constituents. The essential oil only exhibited significant cytotoxicity in mammalian fibroblasts at concentrations greater than 250 μg/mL, while regarding antipromastigote and antiepimastigote activities, they presented values considered clinically relevant, since both had LC₅₀ < 62.5 μg/mL. It can be concluded that this is a pioneer study on the potential of the essential oil of C. winterianus and its use against the parasites T. cruzi and L. brasiliensis, and its importance is also based on this fact. Additionally, according to the results, C. winterianus was effective in presenting values of clinical relevance and low toxicity and, therefore, an indicator of popular use.     

Magnesium-selective test strip

A selective test strip based on an ion-exchange mechanism to determine magnesium is described. This optical and reversible test strip, made on a transparent polyester sheet, has a circular polymeric film of plasticised PVC that contains all of the reagents necessary to produce a response to magnesium, namely, a cation-selective neutral ionophore, 2-amino-N,N′-diheptyl-N,N′-dimethyl-butanediamide, a chromoionophore, N,N-diethyl-5-(octadecanoylimino)-5H-benzo[a]phenoxazine-9-amine, and potassium tetrakis (4-chlorophenyl)borate (TCPB) as a lipophilic salt, which is evaluated by absorbance measurement at 655 nm in a standard photometer. The experimental variables that influence test strip response, especially in terms of selectivity and response time, have been studied. The test strip responded linearly to magnesium between 0.009 and 160 mM in activities. The reproducibility intermembrane at a medium level of the range was 8.0%, as R.S.D., of log aMg2+, and 5.9% as R.S.D. intramembrane. The procedure was applied to the determination of magnesium in different types of waters (tap, well and mineral) validating the results against a reference procedure. This proposed method is quick, inexpensive, selective and sensitive and uses only conventional instrumentation.     

Selected Species of the Cucurbitaceae Family Used in Mexico for the Treatment of Diabetes Mellitus

In Mexico, Diabetes mellitus (DM) is a serious health problem, and although the current pharmacological treatments for DM such as insulin and oral hypoglycemics are available, the Mexican population continues to use medicinal plants in the treatment of DM. The antidiabetic properties of the plant species that belong to the Cucurbitaceae family has already been recognized worldwide. Since Mexico is one of the most important centers of diversity of Cucurbitaceae, the present work contributes to the review of the most used species of Cucurbitaceae in the treatment of DM in Mexico. The reviewed species (Cucurbita ficifolia, C. maxima, C. moschata, C. pepo, Ibervillea sonorae, Sechium edule, Citrullus lanatus, Cucumis melo, and C. sativus) revealed that the antidiabetic effects exerted are effective in a number of mechanisms involved in the complex pathogenesis of DM: hypoglycemic, antioxidant, anti-inflammatory, anti-obesity, protective effects on diverse organs and cells, as well as in the control of dyslipidemias; furthermore, the select species of the Cucurbitaceae family could also be essential components of diets for the control of DM in patients with the disease. Thus, the Cucurbitaceae species selected in the present work represent a source of antidiabetic agents that perhaps establish the bases for novel clinical treatments.     

Monte Carlo simulation for the adsorption of symmetric triblock copolymers I. Configuration distribution and density profiles of adsorbed chains

Monte Carlo simulations for the adsorption of symmetric triblock copolymers from a nonselective solvent at a solid-liquid interface have been performed on a lattice model. In simulations, triblock copolymer molecules are modeled as self-avoiding linear chains composed of m segments of A and n segments of B arranged as A_m/2B_nA_m/2. Either segment A or segment B is attractive, while the other is non-attractive to the surface. The microstructure of the adsorbed layers, including the segment-density profiles and the size distribution of loops, tails and trains are presented. The effect of the adsorption energy, the bulk concentration, the chain composition, as well as the chain length on various adsorption properties has been studied. The results have shown that the size distribution of various configurations is dependent of the adsorption energy, the chain composition and the chain length. The mean length of the loops, trains and tails is insensitive to the bulk concentration. The mean length of the trains increases and that of the tails decreases as the adsorption energy and the length of the attractive segments increase. The mean length of the loops for the end-adsorbed copolymers appears a maximum and that for middle-adsorbed copolymers appears a minimum as the length of attractive segments increases. The length of the non-attractive segments affects mostly the size distribution of the tails. The longer the chain is, the larger the tail appears. The mean length of the tails and loops increases linearly as the length of the non-attractive segments increases, but that of the trains approximately is unchanged.     

Identification,Cloning and Biochemical Characterization of Pseudomonas putida A (ATCC 12633) Monooxygenase Enzyme necessary for the Metabolism of Tetradecyltrimethylammonium Bromide

This study presents the first report of the purification and characterization of a monooxygenase enzyme from Pseudomonas putida A (ATCC 12633) that is responsible for the oxidation of physiologically relevant quaternary ammonium compounds, the tetradecyltrimethylammonium bromide. The degradation of tetradecyltrimethylammonium bromide by P. putida A (ATCC 12633) is initiated by N-dealkylation and catalysed by tetradecyltrimethylammonium monooxygenase (TTABMO), resulting in the formation of tetradecylalkanal and trimethylamine. Based on sequence analysis, the gene for TTABMO (ttbmo) corresponded to an ORF named PP2033 in the genome of P. putida KT2440. Mutation in ttabmo blocked the utilization of tetradecyltrimethylammonium bromide by Pseudomonas putida A (ATCC 12633) as carbon and nitrogen sources. The enzyme can be highly overexpressed in P. putida Δttabmo-T7 in active form and purified as a hexahistidine fusion protein. Like the native enzyme, the his-TTABMO was found to be a monomer with molecular mass of 40 kDa, the isoelectric point 7.3, that catalyses the breakdown of tetradecyltrimethylammonium bromide and utilized NADPH and FAD as cofactor. The biochemical properties and the analysis of the respective protein sequence revealed that TTABMO represents a typical flavoprotein monooxygenase, which is member of a flavoprotein family that is distinct from Baeyer–Villiger monooxygenases.     

Human mitochondrial amidoxime reducing component (mARC): An electrochemical method for identifying new substrates and inhibitors

As recently as 2006 the mitochondrial amidoxime reducing component (mARC) was identified as the fourth and last Mo enzyme present in humans. Its physiological role remains unknown. mARC is capable of reducing a variety of N-hydroxylated compounds such as amidoximes to their corresponding amidine and there is considerable interest in this enzyme from a pharmaceutical perspective. mARC is a target for N-hydroxylated pro-drugs that may be reductively activated intracellularly to release potent drugs such as cationic amidinium ions, which exhibit a broad spectrum of activity as antithrombotics and against various bacteria and parasites. In the quest for a rapid screen of new mARC substrates and inhibitors we present an electrochemical method which utilizes the natural electron partner of mARC, cytochrome b₅, coupled to an electrochemical electrode. Mediated electron transfer from the electrode via cytochrome b₅ to mARC results in a catalytic current in the presence of substrate.