Complete assignment of 1H and 13C NMR data of pravastatin derivatives

The complete ¹H and ¹³C NMR data of 27 pravastatin derivatives are presented. Assignment was achieved by use of 1D and 2D NMR experiments (selective 1D NOE, COSY, NOESY, HSQC, HMBC). Copyright © 2008 John Wiley & Sons, Ltd.     

NMR Studies of a Series of Shikimic Acid Derivatives

The investigations of the ¹H and ¹³C resonances of a series of 9 shikimic acid derivatives were carried out using one‐ and two‐dimensional methods. ¹H and ¹³C spectral data were assigned by DEPT, ¹H‐¹H COSY, HSQC, HMBC, and the stereo configuration was confirmed by 1D selective NOESY experiments.     

Structure elucidation and total assignment of 1H and 13C NMR data for a new bisdesmoside saponin from Cordia piauhiensis

Extensive 1D (¹H NMR, HBBD‐¹³C NMR, DEPT‐¹³C NMR) and 2D (COSY, TOCSY, NOESY, HMQC and HMBC) NMR analysis was used to characterize the structure of a new bisdesmoside saponin isolated from the methanol extract of stems of Cordia piauhiensis Fresen as 3β‐O‐[α‐L ‐rhamnopyranosyl‐(1 → 2)‐β‐D ‐glucopyranosyl]ursolic acid 28‐O‐[β‐D ‐glucopyranosyl‐(1 → 6)‐β‐D ‐glucopyranosyl] ester. Copyright © 2003 John Wiley & Sons, Ltd.     

1H and 13C NMR assignments of abietane diterpenes from Aegiphila lhotzkyana

An NMR study of one new and several known abietane diterpenes isolated from the roots of Aegiphila lhotzkyana is described. In addition to 1D NMR, several 2D shift‐correlated NMR pulse sequences (¹H–¹H‐COSY, NOESY, HMQC and HMBC) were used to establish all the structures, and unambiguously perform the ¹H and ¹³C chemical shift assignments of the new natural diterpene and three derivatives, the NMR data for which have not been reported previously. Revision of current data assignment for teuvincenone H is also suggested. Copyright © 2003 John Wiley & Sons, Ltd.     

Influence of NMR Data Completeness on Structure Determinations of Homodimeric Proteins

The structure determination of homodimeric proteins by NMR using conventional NOESY experiments is still challenging due to the degeneracy of the chemical shifts in the identical monomers, which causes ambiguity in the NOE assignments. Residues involved in the interface between two monomers provide essential intermolecular NOEs for the structure determinations of homodimeric proteins. Hence NMR data, such as NOE peak lists and chemical shift assignments of these interface residues, play a crucial role for the successful structure determination of homodimeric proteins. This paper extends our previous report (Lin, Y.‐J.; Kirchner, D. K.; Güntert, P. J. Magn. Reson.­ 2012 , 222, 96) and investigates the influence of incomplete NOESY peak lists combined with incomplete ¹H chemical shift assignments of the interface residues on the structure determination of homodimeric proteins using the program CYANA. Data incompleteness was simulated by random omission of both NOESY cross peaks and interface ¹H chemical shifts. Our results for three proteins with different percentages of interface residues reveal that the algorithm can tolerate about 40–50% NOESY peak omission with complete interface chemical shift assignments, which indicates that partial NOESY peak omission does not cause severe problems when the interface chemical shifts are completely assigned. Combining NOESY peak omission with incomplete interface chemical shift assignments, the tolerance for interface chemical shift omission decreases with the extent of omitted NOESY peaks. The tolerance for unassigned interface side chain, methyl and aromatic chemical shifts is affected more strongly by NOESY peak omission than that for the omission of general interface ¹H chemical shifts including the backbone. In general about 10–30% peaks omission is tolerated in conjunction with missing chemical shift assignments. If more NOESY peaks are omitted calculations gradually become unstable and tend not to tolerate any missing interface chemical shifts. A large amount of omitted NOESY peaks, for instance 30% omission in our calculations, could decrease the tolerance for missing aromatic or methyl interface ¹H chemical shifts to as few as 2–4 missing chemical shifts, suggesting that complete aromatic and methyl ¹H chemical shift assignments are important when the NOESY peak data is significantly incomplete. Finally, for homodimeric proteins with a low percentage of interface residues, our results reveal that the omission of NOESY peaks, even at an extent of only 10%, can result in no tolerance against the omission of interface ¹H chemical shifts, suggesting that the completeness of both interface ¹H chemical shift assignments and NOESY peaks are important for the successful structure determination of proteins with a small homodimer interface.     

Head-to-tail Aggregates of Sulfonatomethylated Calix[4]resorcinarene in Aqueous Solutions

Two amphiphilic water-soluble sulfonatomethylated calix[4]resorcinarene derivatives were studied by various ¹H NMR techniques (¹H NMR titration, 2D NOESY, NMR diffusion measurements). The derivative with methyl moieties at the lower rim (1) was found to be non-aggregated in the range 0–10 mM in aqueous solutions. Lengthening of the lower rim substituent to pentyl (2) results in self-aggregation of 2 in aqueous solutions with the aggregation number varying from 3 at 1 mM to 20 at 10 mM. The 2D NOESY ¹H NMR spectroscopy data reveal an unusual head-to-tail packing mode in aqueous solutions, resulting from the cooperative effect of weak hydrophobic interactions. Binding of guests (tetramethylammonium and N-methylpyridinium) results in additional stabilization of the aggregates whilst the head-to-tail packing mode of the aggregate is retained.     

Stacking Structure of Confined 1‐Butanol in SBA‐15 Investigated by Solid‐State NMR Spectroscopy

Understanding the complex thermodynamic behavior of confined amphiphilic molecules in biological or mesoporous hosts requires detailed knowledge of the stacking structures. Here, we present detailed solid‐state NMR spectroscopic investigations on 1‐butanol molecules confined in the hydrophilic mesoporous SBA‐15 host. A range of NMR spectroscopic measurements comprising of ¹H spin–lattice (T₁), spin–spin (T₂) relaxation, ¹³C cross‐polarization (CP), and ¹H,¹H two‐dimensional nuclear Overhauser enhancement spectroscopy (¹H,¹H 2D NOESY) with the magic angle spinning (MAS) technique as well as static wide‐line ²H NMR spectra have been used to investigate the dynamics and to observe the stacking structure of confined 1‐butanol in SBA‐15. The results suggest that not only the molecular reorientation but also the exchange motions of confined molecules of 1‐butanol are extremely restricted in the confined space of the SBA‐15 pores. The dynamics of the confined molecules of 1‐butanol imply that the ¹H,¹H 2D NOESY should be an appropriate technique to observe the stacking structure of confined amphiphilc molecules. This study is the first to observe that a significant part of confined 1‐butanol molecules are orientated as tilted bilayered structures on the surface of the host SBA‐15 pores in a time‐average state by solid‐state NMR spectroscopy with the ¹H,¹H 2D NOESY technique.     

HOBS methods for enhancing resolution and sensitivity in small DNA oligonucleotide NMR studies

¹H NMR spectra from biopolymers give chemical shifts classified according to proton type and often suffer from signal degeneracy. Data from nucleic acids are particularly prone to this failing. Recent developments in proton broadband decoupling techniques with the promise of enhanced resolution at full sensitivity have allowed us to investigate the application of homonuclear band‐selective (HOBS) decoupling to the study of small synthetic DNA molecules and to compare these with results from classical and pure shift techniques. Improved signal resolution at full sensitivity in both HOBS‐1D ¹H and HOBS‐2D [¹H, ¹H] NOESY NMR data is reported for three example small DNA molecules. Comparisons of ¹H T₁ and integrals of signals from HOBS‐1D ¹H and HOBS‐2D [¹H, ¹H] NOESY NMR data with those of standard data collection methods are also reported. The results show that homonuclear HOBS‐NOESY data are useful for data assignment purposes and have some merit for quantification purposes. In general, we show that resolution and sensitivity enhancement of ¹H NMR data for small DNA samples may be achieved without recourse to higher magnetic field strength at full sensitivity in a band‐selected manner. Copyright © 2014 John Wiley & Sons, Ltd.     

Complete assignments of 1H and 13C NMR data for two new sesquiterpenes from Cyperus rotundus L.

Two new sesquiterpenes, epi‐guaidiol A (1) and sugebiol (3), together with four known sesquiterpenes, guaidiol A(2), sugetriol triacetate (4), cyperenoic acid (5), and cyperotundone (6) were isolated from the rhizomes of Cyperus rotundus L. Their structures were identified by MS and NMR experiments, and the complete assignments of ¹H and ¹³C NMR data for two new sesquiterpenes were obtained by the aid of two‐dimensional (2D) NMR techniques, including HSQC, HMBC, ¹H‐¹HCOSY and nuclear overhauser enhancement spectroscopy(NOESY). Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis of novel steroids bearing a spirochromene side chain by BF3·Et2O catalyzed aldol condensation of spirostane sapogenins and salicylaldehyde

Treatment of a CH₂Cl₂ solution of sarsasapogenin acetate with salicylaldehyde and BF₃·Et₂O afforded a mixture of two C-22 epimeric steroids bearing a spirochromene moiety in the side chain. The elucidation of the structures of the new compounds were carried out employing a combination of 1D and 2D NMR techniques that includes ¹H, ¹³C, HSQC, HMBC, COSY and NOESY.     

Structural elucidation of four new furostanol saponins from Tupistra chinensis by 1D and 2D NMR spectroscopy

Four new furostanol saponins (1–4), two pairs of diastereoisomers, were isolated from methanolic extracts of Tupistra chinensis rhizomes and their structures were assigned from ¹H and ¹³C NMR spectra, DEPT, and by 2D COSY, NOESY, HMQC, and HMBC experiments. Copyright © 2008 John Wiley & Sons, Ltd.     

Structural elucidation and NMR assignments of four aromatic lactones from a mangrove endophytic fungus (No. GX4‐1B)

Two new aromatic lactones, 6‐hydroxy‐4‐hydroxymethyl‐8‐methoxy‐3‐ methylisocoumarin (1) and 1,10‐dihydroxy‐8‐methyl‐dibenz[b, e]oxepin‐6,11‐dione (2), together with two known compounds, 1,10‐dihydroxy‐dibenz[b, e]oxepin‐6,11‐dione (3) and 3‐hydroxymethyl‐6,8‐dimethoxycoumarin (4), were isolated from a mangrove endophytic fungus (No. GX4‐1B) collected from the South China Sea. Their structures were elucidated and the data of ¹H and ¹³C NMR were assigned completely by HREIMS, 1D and 2D NMR experiments including HMQC, HMBC and NOESY. Copyright © 2010 John Wiley & Sons, Ltd.     

Homonuclear Selective One-Dimensional Gradient NMR Experiments in the Structure Determination of Natural Diterpene Derivatives

Summary.  The solution structure of two natural diterpene derivatives, the secondary metabolites esulatin-A and esulatin-B of Euphorbia esula, was investigated by homonuclear NMR experiments. Since the spectral dispersion of the ¹H NMR spectra at 500 MHz was sufficient to separate several skeletal protons of the title compounds, they were selectively excited with a double pulsed field gradient spin-echo (DPFGSE) sequence using 180°Gaussian pulses sandwiched between sine shaped gradients. With the use of selective excitation, scalar as well as dipolar interactions of the selected spins were monitored through one-dimensional (1D) COSY, TOCSY, and NOESY experiments. The chemical shifts of the coupling partners could be accurately extracted from the 1D COSY and TOCSY spectra recorded with high digital resolution. The selective TOCSY experiment provided an excellent opportunity to identify spins belonging to the same scalarly coupled spin system. The solution state conformation was investigated by selective gradient enhanced NOESY experiments. Proton–proton distances were evaluated from the cross-relaxation rates obtained from a quantitative analysis of the NOESY spectra recorded with different mixing times. The NMR derived distances were compared to the results of solid state X-ray diffraction measurements. Corresponding author. E-mail: pforgo@chem.u-szeged.hu Received November 21, 2001. Accepted (revised) January 9, 2002     

2D F/F NOESY for the assignment of NMR spectra of fluorochemicals

Two-dimensional (2D) NMR is an invaluable technique for the complete analysis and assignment of chemical structures. Although ¹⁹F/¹⁹F COSY experiments are routinely used for assignments in perfluorochemicals, interpretation can be difficult because four-bond (⁴J_FF) coupling constants are typically 5-10-fold larger than vicinal (³J_FF) coupling constants. Furthermore, the dependence of long range coupling constants on stereochemistry is not always known. Fluorine-fluorine NOESY correlations represent an enhancement in the arsenal of 2D ¹⁹F NMR experiments. The NOESY and COSY spectra of 2,2,3,3,4,4,4-heptafluorobutanol and a telomeric perfluorochemical iodide show that COSY identifies the 1,4-fluorine interactions whereas NOESY identifies the vicinal fluorine atoms. The combined experiments have been used to unambiguously assign all of the fluorines in a mixture of cis- and trans-perfluoro-1,3-dimethylcyclohexane and in a substituted perfluorotetrahydrofuran.     

Structural determination and complete NMR spectral assignments of a new bufadienolide glycoside

The structure of a new bufadienolide glycoside, cinobufagin 3‐O‐β‐D ‐glucoside, was determined by extensive 1D and 2D NMR techniques (¹H, ¹³C, DEPT, COSY, HSQC, g‐HMBC and NOESY). The complete assignments of the ¹³C and ¹H spectral data were also carried out. Copyright © 2002 John Wiley & Sons, Ltd.     

Complete assignments of 1H and 13C NMR resonances of oleanolic acid, 18α‐oleanolic acid,ursolic acid and their 11‐oxo derivatives

Complete assignments of ¹H and ¹³C NMR chemical shifts for oleanolic acid, 18α‐oleanolic acid, ursolic acid and their 11‐oxo derivatives based on ¹H, ¹³C, 2D DQF‐COSY, NOESY, HSQC, HMBC and HSQC‐TOCSY experiments were achieved. Copyright © 2003 John Wiley & Sons, Ltd.     

Interaction in Binary Mixtures of Gemini Surfactant G12-6-12 and CTAB by NMR

The interaction between N, N′-bis（dimethyldodecyl）-1,6-hexanediammoniumdibromide （G12-6-12） and cetyltrimethylammonium bromide （CTAB） in D20 aqueous medium has been investigated by NMR at 298 K. The G12-6-12 and CTAB are about 0.773 and measured critical micelle concentration （cmc） of 0.668 mmol/L, respectively. The cmc^＊ （cmc of mixture） values are less than CMC^＊ （cmc of ideally mixed solution） in the mixed system, and the interaction parameter βM〈0 at different molar fractions α of G12-6-12 in the mixed systems, but just when α≤0.3, cmc^＊ values are much smaller than CMC^＊, and βM satisfies the relation of ｜βM｜〉｜ln（cmc1/cmc2）｜ （cmcl： cmc of pure G12-6-12 and cmc2： cmc Of pure CTAB）. The results indicate that there exists synergism between G12-6-12 and CTAB, and they can form mixed micelles, which is further proven by 2D NOESY and self-diffusion coefficient D experiments. There are intermolecular cross peaks between G12-6-12 and CTAB in 2D NOESY, and the radius of micelles in mixed solution is bigger than that in G12-6-12 pure solution in D experiments, indicating there are mixed micelles. However, when α〉0.3, we find that cmc^＊≈CMC^＊, βM≈0, obviously, the two surfactants are almost ideal mixing fitting the pseudo-phase separation model and regular solution theory.     

Dynamic NMR: A new procedure for the estimation of mixing times in the 2D EXSY experiments. A four-site exchange system studied by 1D and 2D EXSY spectroscopy

A procedure for the estimation of the mixing time between the last two 90° pulses in the classic three-pulse sequence NOESY/EXSY is proposed and tested and some considerations for the treatment of the two-dimensional (2D) ¹H NMR exchange spectra are given. The rate constants are thus obtained with reasonable precision. This procedure was followed to obtain the 2D spectra of the model compound α-[bis(dimethylamino)methylene]-4-nitrophenylacetonitrile, which represents a four-site exchange system. The barriers to restricted rotations found in this compound were also determined from one-dimensional (1D) ¹H NMR spectra, which were processed with the iterative complete lineshape analysis (CLSA) method. The double-fit approach was incorporated in the CLSA method. It is shown that the results from the 2D dynamic NMR spectral studies corroborate those obtained by the CLSA double-fit method.     

Complete assignments of the 1H and 13C NMR spectra of five rearranged abietane diterpenoids

An NMR study of five highly functionalized and rearranged abietane diterpenoids is described. In addition to 1D NMR methods, including 1D NOESY spectra, 2D shift‐correlated experiments [¹H, ¹³C‐gHSQC‐¹J (C,H) and ¹H, ¹³C‐gHMBC‐ⁿJ (C,H) (n = 2 and 3)] were used for the complete and unambiguous ¹H and ¹³C chemical shift assignments of these substances. Copyright © 2002 John Wiley & Sons, Ltd.     

1H, 13C and 15N NMR assignments for N6‐isopentenyladenosine/inosine analogues

The complete ¹H, ¹³C and ¹⁵N NMR signals assignments of some new isopentenyladenosine analogues were achieved using one‐ and two‐dimensional experiments (gs‐NOESY, gs‐HMQC and gs‐HMBC). Copyright © 2010 John Wiley & Sons, Ltd.