19F n.m.r spectra of polyfluoroquinolines. Long range inter-ring 19F?19F coupling constants and 19F chemical shifts

The signs and magnitudes of every fluorine–fluorine coupling constant in perfluoroquinoline ( 1 ), 2,4-dichloropentafluoroquinoline ( 2 ) and 2-bromohexafluoroquinoline ( 3 ) have been determined by ¹⁹F n.m.r. These provide an unambiguous assignment of the spectrum of the first compound and its derivatives. Inter-ring fluorine–fluorine coupling constants were found to be positive over an odd number of bonds and negative over an even number of bonds, similar to that observed in proton–proton coupling constants in multicyclic systems. The ¹⁹F chemical shifts of perfluoroquinoline and its protonated salt are reported and directly correlated with SCF MO calculated π-electron densities at both fluorine and bonded carbon atoms.     

The 1H NMR spectra of quinoline,quinoline N-oxide,the quinolinium ion and of their monomethyl derivatives

¹H chemical shifts of quinoline, quinoline N-oxide and the quinolinium ion were obtained by complete analysis of their NMR spectra and interpreted critically in an attempt to quantify the possible different effects acting on the shielding constant of protons in these systems. Semi-empirical SCF calculations of electron charge densities and ring current contributions were also performed. It was found that the same effects that act on the shielding of protons directly bonded to the heterocyclic system also act, in an attenuated form, on the proton chemical shift of methyl groups in monomethyl derivatives. Vicinal coupling constants were rationalised in terms of π-electron bond order and electro-negativity of neighbouring atoms.     

13C NMR study of some polychloro-isobutane and -isobutene compounds

The ¹³C chemical shifts and the carbon–proton coupling constants have been determined for some chlorinated isobutane and isobutene compounds. The one-bond coupling constants in isobutane derivatives showed a regular increase with an increasing number of γ-chlorine substituents. The three-bond coupling constant of the methyl carbon decreased from 4.2 to 2.0 Hz as the number of chlorine substituents in the γ-position increased. In the isobutene compounds, the vicinal coupling of C-1 was larger to protons in a group that is trans with respect to a chlorine substituent on C-1 than to those in the corresponding group cis to the chlorine. The vicinal coupling constants between atoms in geminal groups (on C-2) seem to be affected by the orientation of the chlorine substituent on C-1.     

Nuclear spin–spin coupling and nuclear motion

The vibration and rotation of molecules affects nuclear spin–spin coupling constants. This manifests itself as a temperature dependence of the coupling and also as an isotope effect (after allowing, where necessary, for differing magnetogyric ratios of the two nuclei involved in the isotopic substitution). Within the Born–Oppenheimer approximation, a nuclear spin–spin coupling surface can be defined for each pair of coupled nuclei. This surface is sampled by the nuclei as they undergo the excursions about equilibrium geometry that are governed by the force field. An accurate ab initio carbon–proton spin–spin coupling surface for the methane molecule has been calculated. This was obtained by summing the surfaces for each of the four contributions—Fermi contact, spin–dipolar, orbital paramagnetic, and orbital diamagnetic—expressed as power series in terms of symmetry coordinates. Preliminary calculations for ¹³CH₄ and ¹³CD₄ give a difference of only 6% between the calculated and observed nuclear motion contributions. The observed temperature dependence is also accounted for by the calculations. For these isotopomers, bond stretching plays the dominant role. © 1994 John Wiley & Sons, Inc.     

Theoretical analysis of proton relays in electrochemical proton-coupled electron transfer

The coupling of long-range electron transfer to proton transport over multiple sites plays a vital role in many biological and chemical processes. Recently the concerted proton-coupled electron transfer (PCET) reaction in a molecule with a hydrogen-bond relay inserted between the proton donor and acceptor sites was studied electrochemically. The standard rate constants and kinetic isotope effects (KIEs) were measured experimentally for this double proton transfer system and a related single proton transfer system. In the present paper, these systems are studied theoretically using vibronically nonadiabatic rate constant expressions for electrochemical PCET. Application of this approach to proton relays requires the calculation of multidimensional proton vibrational wave functions and the incorporation of multiple proton donor-acceptor motions. The decrease in proton donor-acceptor distances due to thermal fluctuations and the contributions from excited electron-proton vibronic states play important roles in these systems. The calculated KIEs and the ratio of the standard rate constants for the single and double proton transfer systems are in agreement with the experimental data. The calculations indicate that the standard PCET rate constant is lower for the double proton transfer system because of the smaller overlap integral between the ground state reduced and oxidized proton vibrational wave functions, resulting in greater contributions from excited electron-proton vibronic states with higher free energy barriers. The theory predicts that this rate constant may be increased by modifying the molecule in a manner that decreases the equilibrium proton donor-acceptor distances or alters the molecular thermal motions to facilitate the concurrent decrease of these distances. These insights may guide the design of more efficient catalysts for energy conversion devices.     

The proton spectrum including 13C-satellites of π-benzenechromium tricarbonyl in a nematic solvent

The proton spectrum of π-benzenechromium tricarbonyl with ¹³C-satellites due to ring- and carbonyl-carbons at natural abundance has been investigated in a nematic solvent. The structural data are found to be in agreement with those from electron and neutron diffraction measurements. The proton–proton indirect coupling constants have also been determined.     

Size- and shape-dependent activity of metal nanoparticles as hydrogen-evolution catalysts: mechanistic insights into photocatalytic hydrogen evolution

The catalytic activity of Pt nanoparticles (PtNPs) with different sizes and shapes was investigated in a photocatalytic hydrogen‐evolution system composed of the 9‐mesityl‐10‐methylacridinium ion (Acr⁺–Mes: photocatalyst) and dihydronicotinamide adenine dinucleotide (NADH: electron donor), based on rates of hydrogen evolution and electron transfer from one‐electron‐reduced species of Acr⁺–Mes (Acr^.–Mes) to PtNPs. Cubic PtNPs with a diameter of (6.3±0.6) nm exhibited the maximum catalytic activity. The observed hydrogen‐evolution rate was virtually the same as the rate of electron transfer from Acr^.–Mes to PtNPs. The rate constant of electron transfer (k_et) increased linearly with increasing proton concentration. When H⁺ was replaced by D⁺, the inverse kinetic isotope effect was observed for the electron‐transfer rate constant (k_et(H)/k_et(D)=0.47). The linear dependence of k_et on proton concentration together with the observed inverse kinetic isotope effect suggests that proton‐coupled electron transfer from Acr^.–Mes to PtNPs to form the Pt? H bond is the rate‐determining step for catalytic hydrogen evolution. When FeNPs were used instead of PtNPs, hydrogen evolution was also observed, although the hydrogen‐evolution efficiency was significantly lower than that of PtNPs because of the much slower electron transfer from Acr^.–Mes to FeNPs.     

Investigation of the resonance‐assisted hydrogen bond in model β‐diketones through localized molecular orbital analysis of the spin–spin coupling constants related to the O–H · · · O hydrogen bond

The resonance‐assisted hydrogen bond (HB) phenomenon has been studied theoretically by a localized molecular orbital (LMO) decomposition of the spin–spin coupling constants between atoms either involved or close to the O–H · · · O system of some β‐diketones and their saturated counterparts. The analysis, carried out at the level of the second‐order polarization propagator approximation, shows that the contributions in terms of LMO to the paramagnetic spin orbital and the spin dipolar Ramsey terms proof the importance of the delocalized π‐electron structure supporting the idea of the existence of the resonance‐assisted HB phenomenon phenomenon. The LMO contributions to the Fermi contact term indicate mainly the presence of the HB that may or not be linked to the π‐electrons. Copyright © 2014 John Wiley & Sons, Ltd.     

Structural trends of 29Si–1H spin–spin coupling constants across double bond

The calculations of geminal and vicinal ²⁹Si–¹H spin–spin coupling constants across double bond in 15 alkenylmethylsilanes and alkenylchlorosilanes were carried out at the second‐order polarization propagator approach level in a good agreement with experiment. Two structural trends, namely, (i) the geometry of the coupling pathway and (ii) the effect of the electrowithdrawing substituent, have been interpreted in terms of the natural J‐coupling analysis within the framework of the natural bond orbital approach. Thus, the marked difference between cisoidal and transoidal ²⁹Si–¹H spin–spin coupling constants across double bond was accounted for the delocalization contributions including bonding and antibonding Si–C and C–H orbitals, whereas the chlorine effect was explained in terms of the steric contributions including bonding Si–Cl orbitals. Copyright © 2012 John Wiley & Sons, Ltd.     

Electron bridging dihydrogen bond in the imidazole-contained anion derivatives

The large contact distance of electron bridging dihydrogen bond (EBDB), which is over 2.4 A, is the most prominent characteristic for the imidazole-contained anion derivatives. The elongation of N-H bond and the shortening of H...H distance can be observed upon hydration and hydrogenation. Transformation from EBDB to dissociative H2 is convenient upon sequential hydrogenation. The H...H distance decreases with the enhancement of the electronegativity of the heavy atom which contacts directly with one of these two hydrogen atoms. NMR shielding of the bonding N varies significantly upon hydration and hydrogenation. The spin-spin coupling constants, 1J(H-H), is dominated predominantly by the paramagnetic spin-orbit and diamagnetic spin-orbit contributions instead of the Fermi-contact term. Enhancement of electronegativity of the heavy atom leads to the increase of 1J(H-H) coupling constants. The stabilization is enhanced upon hydration predominantly for the formation of O-H...N H bond, while it is reversed upon hydrogenation for the cleavage of big pi bond, Pi5(6). Enhancement of the stability is demonstrated by the increase of stabilization energy and vertical electron detachment energy with the electronegativity of the heavy atom. The dominant contributions for the formation of such electron bridging dihydrogen bond are the high polarity of each fragment, large electron density between two fragments, and strong bonding interaction of the bridging electron with H(N) atoms. The H...H interaction can be formed by X-Hdelta+ and Hdelta- -Y polar molecules in Hdelta+...Hdelta- and Hdelta+...e...Hdelta+ of two forms.     

Determination of the 1H—31P coupling parameters in triphenylphosphine

From the single and double resonance ¹H NMR spectra of triphenylphosphine, magnitudes and relative signs of the proton–proton and proton–phosphorus spin coupling constants were calculated. The values of these parameters were found to be nearly equal to those of the respective ¹H—¹H couplings in benzene. Results show that inter-ring proton–proton couplings are negligibly small.     

Deuterium N.M.R. of liquid crystal solutions with proton–proton dipolar decoupling

Abstract

Deuterium N.M.R. of solute molecules in liquid crystal solutions with the removal of proton–proton dipolar coupling has been explored. The deuterium N.M.R. spectrum of a partially deuterated compound dissolved in a liquid crystal solvent is usually complex or unresolved because of proton–deuterium coupling and extensive proton–proton dipolar coupling. When the latter is removed by a special dipolar decoupling sequence, the deuterium N.M.R. spectrum becomes first order, and deuterium–proton dipolar coupling constants can be readily obtained from the spectrum. Results of monodeuterated hexanes and heptanes dissolved in ZLI 2142 are reported.     

Theoretical studies of nuclear magnetic resonance parameters for the proton-exchange pathways in porphyrin and porphycene

The nuclear magnetic resonance (NMR) parameters in porphyrin and porphycene have been calculated to investigate their changes during the process of proton exchange, using density-functional theory (DFT) for both the spin-spin coupling constants and the shielding constants. In addition, in calculations on the smaller 1,3-bis(arylimino)isoindoline molecule, we have tested the performance of our computational approach against experimental data. The calculated nuclear spin-spin coupling constants and shielding constants have been analyzed as functions of the progress of the proton transfer between two nitrogen atoms. The one-bond couplings between proton and nitrogen, dominated by the Fermi-contact term, decay steeply as the internuclear distance increases. The small changes in the intramolecular J(HH) coupling between two inner protons are mainly determined by the sum of relatively large spin-orbit terms. The isotropic shielding constant shows a strong deshielding of the nitrogen nuclei as the proton migrates away. Both the isotropic shielding of the exchanged protons and the shielding anisotropy exhibit a minimum close to the transition states.     

Ascorbigen A—NMR identification

The connectivities of all atoms in ascorbigen A, an important metabolite, were determined unambiguously for the first time. The connectivity between carbon atoms was established by 2D INADEQUATE, and one-bond ¹³C–¹³C coupling constants were determined for all pairs of directly connected carbon atoms except for two strongly coupled carbon pairs. The ¹³C–¹³C coupling in one of the pairs was proved by a modification of standard INADEQUATE; however, the signals from the other pair were too weak to be observed. The connectivity within the two strongly coupled C–C pairs was confirmed by a combination of COSY and gHSQC; the latter experiment also identified all C–H bonds. The proton nuclear magnetic resonance (¹H NMR) spectra in dry dimethyl sulfoxide allowed identification and assignment of the signals due to NH and OH protons. The derived structure, 3-((1H-indol-3-yl)methyl)-3,3a,6-trihydroxytetrahydrofuro[3,2-b]furan-2(5H)-one, agrees with the structure suggested for ascorbigen A in 1966. The density functional theory (DFT) calculations showed that among 16 possible stereoisomers, only two complied with the almost zero value of the measured ³J(H6–H6a). Of the two stereoisomers, 3S,3aS,6S,6aR and 3R,3aR,6R,6aS, the latter was excluded on synthetic grounds. The nuclear Overhauser effect measurements unveiled close proximity between H2′ proton of the indole and the H6a proton of the tetrahydrofuro[3,2-b]furan part. Detailed structural interpretation of the measured NMR parameters by means of DFT NMR was hampered by rotational flexibility of the indole and tetrahydrofuro[3,2-b]furan parts and inadequacy of Polarizable Continuum Model (PCM) solvent model.     

Conformational analysis of trinucleotides containing a single abasic residue; mimics of DNA damage

The conformations of three deoxytrinucleotide analogues [d(TpXpT), where X = T, tetrahydrofuran (THF) or propyl (Pr)] were investigated using ¹H NMR spectroscopy as part of our studies of DNA‐base damage. The phosphorus‐decoupled ¹H NMR spectrum of each compound was simulated and values for the vicinal proton–proton coupling constants of the sugar ring hydrogens were extracted at several different temperatures, for use in conformational analyses. It was found that the south‐pucker preference of the sugar 3′ to the modification is increased whereas that of the 5′ is decreased relative to the puckers observed for the non‐modified system. The conformational change is <25%. This subtle effect may be sufficient for recognition by DNA repair enzymes. Copyright © 2003 John Wiley & Sons, Ltd.     

300 Mhz 1H NMR spectra and conformations of biotin and related hexahydrothienoimidazolone derivatives

¹H NMR spectra of biotin and four related hexahydrothienoimidazolones in which the endo pentanoate side chain of biotin is replaced by another endo or exo substituent, and the urea nitrogen atoms are substituted with benzyl groups, have been obtained at 300 MHz. Vicinal coupling constants differentiate cis and trans proton pairs. The generalized Karplus equation was utilized to calculate dihedral angles from vicinal proton-proton coupling constants. The conformation of biotin in solution, calculated from coupling constants, is in good agreement with solid state X-ray crystallographic data.     

Covalent attachments of boron nitride nanotubes through a carboxylic linker: Density functional studies

Properties of attached boron nitride (BN) nanotubes based on linking two zigzag nanotubes through a carboxylic (–(CO)O–) linker were investigated by performing density functional theory (DFT) calculations. The linking boron and nitrogen atoms at the edges of two zigzag BN nanotubes were linked to the –(C]O)O– linker to make possible the attachments of two BN nanotubes together. Total energies, energy gaps, dipole moments, linking bond lengths and angles, and quadrupole coupling constants were obtained for the optimized structures to determine the properties of the attached BN nanotubes. The results indicated that different properties could be seen for the investigated models based on their linking status. For quadrupole coupling constants, the most significant changes of parameters were observed for the linking atoms among the investigated models of attached BN nanotubes.     

Two-dimensional (2D) pulsed electron paramagnetic resonance study of VO(2+)-triphosphate interactions: evidence for tridentate triphosphate coordination, and relevance to bone uptake and insulin enhancement by vanadium pharmaceuticals

Two- and four-pulse electron spin echo envelope modulation (ESEEM) and four-pulse two-dimensional hyperfine sublevel correlation (HYSCORE) spectroscopies have been used to determine the solution structure of a 3:1 triphosphate:vanadyl solution at pH 5.0. Limited quantitative data were extracted from the two pulse spectra; however, HYSCORE proved to be more useful in the detection and interpretation of the (31)P and (1)H couplings. Three sets of cross-peaks were observed for each nucleus. For the (31)P couplings, three sets of cross-peaks were observed in the HYSCORE spectrum, and contour line shape analysis yielded coupling constants of approximately 15, 9, and 1 MHz. HYSCORE cross-peaks in the proton region were partially overlapping; however, interpretation of the proton coupling was simplified through the use of one-dimensional four-pulse ESEEM and subsequent analysis of the sum combination peaks. Comparison of the derived isotropic and anisotropic coupling constants with results from earlier ESEEM and electron nuclear double resonance (ENDOR) studies was consistent with the presence of at least one, and most likely two, water molecules coordinated in the equatorial plane of the vanadyl cation. The vanadyl-triphosphate system was shown to be an accurate model of the in vivo vanadyl-phosphate coupling constants determined in an earlier study (Dikanov, S. A.; Liboiron, B. D.; Thompson, K. H.; Vera, E.; Yuen, V. G.; McNeill, J. H.; Orvig, C. J. Am. Chem. Soc. 1999, 121, 11004.) Comparison of these values to those found in previous spectroscopic studies of vanadyl-triphosphate interactions, along with a detailed structural interpretation, are presented. This work represents the first detection of tridentate polyphosphate coordination to the vanadyl ion, and the first observation of an axial phosphate interaction not previously reported in earlier ENDOR and pulsed electron paramagnetic resonance studies.     

Basis set error estimation for DFT calculations of electronic g‐tensors for transition metal complexes

We present a detailed study of the basis set dependence of electronic g‐tensors for transition metal complexes calculated using Kohn–Sham density functional theory. Focus is on the use of locally dense basis set schemes where the metal is treated using either the same or a more flexible basis set than used for the ligand sphere. The performance of all basis set schemes is compared to the extrapolated complete basis set limit results. Furthermore, we test the performance of the aug‐cc‐pVTZ‐J basis set developed for calculations of NMR spin‐spin and electron paramagnetic resonance hyperfine coupling constants. Our results show that reasonable results can be obtain when using small basis sets for the ligand sphere, and very accurate results are obtained when an aug‐cc‐pVTZ basis set or similar is used for all atoms in the complex. © 2014 Wiley Periodicals, Inc.