Can Helical Peptides Unwind One Turn at a Time? ‐ Controlled Conformational Transitions in α,β2,3‐Hybrid Peptides

Unfolding of helical trans‐β^2,3‐hybrid peptides with (α–β)_nα composition, when executed by increasing solvent polarity or temperature, proceeded in a systematic manner with the turns unwinding sequentially; C‐terminal region of these peptides were first to unwind and the process propagated towards N terminus with more and more β residues equilibrating from the gauche to the anti rotameric state across C_α?C_β. This is evidenced by clear change in their C_βH signal splitting, ³J_CαH–CβH values, and sequential disappearance of i,i+2 NOEs.     

Stereospecific control of peptide gas‐phase ion chemistry with cis and trans cyclo ornithine residues

We report non‐chiral amino acid residues cis‐ and trans‐1,4‐diaminocyclohexane‐1‐carboxylic acid (cyclo‐ornithine, cO) that exhibit unprecedented stereospecific control of backbone dissociations of singly charged peptide cations and hydrogen‐rich cation radicals produced by electron‐transfer dissociation. Upon collision‐induced dissociation (CID) in the slow heating regime, peptide cations containing trans‐cO residues undergo facile backbone cleavages of amide bonds C‐terminal to trans‐cO. By contrast, peptides with cis‐cO residues undergo dissociations at several amide bonds along the peptide ion backbone. Diastereoisomeric cO‐containing peptides thus provide remarkably distinct tandem mass spectra. The stereospecific effect in CID of the trans‐cO residue is explained by syn‐facially directed proton transfer from the 4‐ammonium group at cO to the C‐terminal amide followed by neighboring group participation in the cleavage of the CO―NH bond, analogous to the aspartic acid and ornithine effects. Backbone dissociations of diastereoisomeric cO‐containing peptide ions generate distinct [b_n]⁺‐type fragment ions that were characterized by CID‐MS³ spectra. Stereospecific control is also reported for electron‐transfer dissociation of cis‐ and trans‐cO containing doubly charged peptide ions. The stereospecific effect upon electron transfer is related to the different conformations of doubly charged peptide ions that affect the electron attachment sites and ensuing N―C_α bond dissociations.     

Arginine‐Facilitated α‐ and π‐Radical Migrations in Glycylarginyltryptophan Radical Cations

We have used model tripeptides GXW (with X being one of the amino acid residues glycine (G), alanine (A), leucine (L), phenylalanine (F), glutamic acid (E), histidine (H), lysine (K), or arginine (R)) to study the effects of the basicity of the amino acid residue on the radical migrations and dissociations of odd‐electron molecular peptide radical cations M^.+ in the gas phase. Low‐energy collision‐induced dissociation (CID) experiments revealed that the interconvertibility of the isomers [G^.XW]⁺ (radical centered on the N‐terminal α‐carbon atom) and [GXW]^.+ (radical centered on the π system of the indolyl ring) generally increased upon increasing the proton affinity of residue X. When X was arginine, the most basic amino acid, the two isomers were fully interconvertible and produced almost identical CID spectra despite the different locations of their initial radical sites. The presence of the very basic arginine residue allowed radical migrations to proceed readily among the [G^.RW]⁺ and [GRW]^.+ isomers prior to their dissociations. Density functional theory calculations revealed that the energy barriers for isomerizations among the α‐carbon‐centered radical [G^.RW]⁺, the π‐centered radical [GRW]^.+, and the β‐carbon‐centered radical [GRW_β^.]⁺ (ca. 32–36 kcal mol⁻¹) were comparable with those for their dissociations (ca. 32–34 kcal mol⁻¹). The arginine residue in these GRW radical cations tightly sequesters the proton, thereby resulting in minimal changes in the chemical environment during the radical migrations, in contrast to the situation for the analogous GGW system, in which the proton is inefficiently stabilized during the course of radical migration.     

Differentiation of Positional Isomers of Hybrid Peptides Containing Repeats of β-Nucleoside Derived Amino Acid (β-Nda-) and L-Amino Acids by Positive and Negative Ion Electrospray Ionization Tandem Mass Spectrometry (ESI-MS<Superscript><Emphasis Type="Italic">n</Emphasis></Superscript>)

A new class of positional isomeric pairs of -Boc protected oligopeptides comprised of alternating nucleoside derived β-amino acid (β-Nda-) and L-amino acid residues (alanine, valine, and phenylalanine) have been differentiated by both positive and negative ion electrospray ionization ion-trap tandem mass spectrometry (ESI-MS ⁿ ). The protonated dipeptide positional isomers with β-Nda- at the N-terminus lose CH₃OH, NH₃, and C₂H₄O₂, whereas these processes are absent for the peptides with L-amino acids at the N-terminus. Instead, the presence of L-amino acids at the N-terminus results in characteristic retro-Mannich reaction involving elimination of imine. A good correlation has been observed between the conformational structure of the peptides and the abundance of y_n⁺ and b_n⁺ ions in MS ⁿ spectra. In the case of tetrapeptide isomers that are reported to form helical structures in solution phase, no y_n⁺ and b_n⁺ ions are observed when the corresponding amide -NH- participates in the helical structures. In contrast, significant y_n⁺ and b_n⁺ ions are formed when the amide -NH- is not involved in the H-bonding. In the case of tetra- and hexapeptides, it is observed that abundant b_n⁺ ions are formed, presumably with stable oxazolone structures when the C-terminus of the b_n⁺ ions possessed L-amino acid and the β-Nda- at the C-terminus appears to prevent the cyclization process leading to the absence of corresponding b_n⁺ ions.     

Characterization of N‐Boc/Fmoc/Z‐N′‐formyl‐gem‐diaminoalkyl derivatives using electrospray ionization multi‐stage mass spectrometry

N‐Boc/Fmoc/Z‐N′‐formyl‐gem‐diaminoalkyl derivatives, intermediates particularly useful in the synthesis of partially modified retro‐inverso peptides, have been characterized by both positive and negative ion electrospray ionization (ESI) ion‐trap multi‐stage mass spectrometry (MSⁿ). The MS² collision induced dissociation (CID) spectra of the sodium adduct of the formamides derived from the corresponding N‐Fmoc/Z‐amino acids, dipeptide and tripeptide acids show the [M + Na‐NH₂CHO]⁺ ion, arising from the loss of formamide, as the base peak. Differently, the MS² CID spectra of [M + Na]⁺ ion of all the N‐Boc derivatives yield the abundant [M + Na‐C₄H₈]⁺ and [M + Na‐Boc + H]⁺ ions because of the loss of isobutylene and CO₂ from the Boc protecting function. Useful information on the type of amino acids and their sequence in the N‐protected dipeptidyl and tripeptidyl‐N′‐formamides is provided by MS² and subsequent MSⁿ experiments on the respective precursor ions. The negative ion ESI mass spectra of these oligomers show, in addition to [M‐H]^?, [M + HCOO]^? and [M + Cl]^? ions, the presence of in‐source CID fragment ions deriving from the involvement of the N‐protecting group. Furthermore, MSⁿ spectra of [M + Cl]^? ion of N‐protected dipeptide and tripeptide derivatives show characteristic fragmentations that are useful for determining the nature of the C‐terminal gem‐diamino residue. The present paper represents an initial attempt to study the ESI‐MS behavior of these important intermediates and lays the groundwork for structural‐based studies on more complex partially modified retro‐inverso peptides. Copyright © 2013 John Wiley & Sons, Ltd.     

β‐Turn Analogues in Model αβ‐Hybrid Peptides: Structural Characterization of Peptides Containing β2,2Ac6c and β3,3Ac6c Residues

The effect of gem‐dialkyl substituents on the backbone conformations of β‐amino acid residues in peptides has been investigated by using four model peptides: Boc‐Xxx‐β^2,2Ac₆c(1‐aminomethylcyclohexanecarboxylic acid)‐NHMe (Xxx=Leu ( 1 ), Phe ( 2 ); Boc=tert‐butyloxycarbonyl) and Boc‐Xxx‐β^3,3Ac₆c(1‐aminocyclohexaneacetic acid)‐NHMe (Xxx=Leu ( 3 ), Phe ( 4 )). Tetrasubstituted carbon atoms restrict the ranges of stereochemically allowed conformations about flanking single bonds. The crystal structure of Boc‐Leu‐β^2,2Ac₆c‐NHMe ( 1 ) established a C₁₁ hydrogen‐bonded turn in the αβ‐hybrid sequence. The observed torsion angles (α(?≈?60°, ψ≈?30°), β(?≈?90°, θ≈60°, ψ≈?90°)) corresponded to a C₁₁ helical turn, which was a backbone‐expanded analogue of the type III β turn in αα sequences. The crystal structure of the peptide Boc‐Phe‐β^3,3Ac₆c‐NHMe ( 4 ) established a C₁₁ hydrogen‐bonded turn with distinctly different backbone torsion angles (α(?≈?60°, ψ≈120°), β(?≈60°, θ≈60°, ψ≈?60°)), which corresponded to a backbone‐expanded analogue of the type II β turn observed in αα sequences. In peptide 4 , the two molecules in the asymmetric unit adopted backbone torsion angles of opposite signs. In one of the molecules, the Phe residue adopted an unfavorable backbone conformation, with the energetic penalty being offset by a favorable aromatic interaction between proximal molecules in the crystal. NMR spectroscopy studies provided evidence for the maintenance of folded structures in solution in these αβ‐hybrid sequences.     

Influence of basic residues on dissociation kinetics and dynamics of singly protonated peptides: time‐resolved photodissociation study

Product ion yields in postsource decay and time‐resolved photodissociation at 193 and 266 nm were measured for some peptide ions with lysine ([KF₆ + H]⁺, [F₆K + H]⁺, and [F₃KF₃ + H]⁺) formed by matrix‐assisted laser desorption ionization. The critical energy (E₀) and entropy (ΔS^?) were determined by RRKM fitting of the data. The results were similar to those found previously for peptide ions with histidine. To summarize, the presence of a basic residue, histidine or lysine, inside a peptide ion retarded its dissociation by lowering ΔS^?. On the basis of highly negative ΔS^?, presence of intramolecular interaction involving a basic group in the transition structure was proposed. Copyright © 2009 John Wiley & Sons, Ltd.     

Anion Recognition by Aliphatic Helical Oligoureas

Anion binding properties of neutral helical foldamers consisting of urea type units in their backbone have been investigated. ¹H NMR titration studies in various organic solvents including DMSO suggest that the interaction between aliphatic oligoureas and anions (CH₃COO^?, H₂PO₄^?, Cl^?) is site‐specific, as it largely involves the urea NHs located at the terminal end of the helix (positive pole of the helix), which do not participate to the helical intramolecular hydrogen‐bonding network. This mode of binding parallels that found in proteins in which anion‐binding sites are frequently found at the N‐terminus of an α‐helix. ¹H NMR studies suggest that the helix of oligoureas remains largely folded upon anion binding, even in the presence of a large excess of the anion. This study points to potentially useful applications of oligourea helices for the selective recognition of small guest molecules.     

Polyaniline‐Modified Silver and Binary Silver‐Cobalt Catalysts for Oxygen Reduction Reaction

Novel dendrite‐like silver particles were electrodeposited on Ti substrates from a supporting electrolyte‐free 30 mmol L^?1 Ag(NH₃)₂⁺ solution, to synthesize the den‐Ag/Ti electrode. Binary Ag_xCo_y/Ti electrodes with different Ag:Co atomic ratios were further obtained by electrodeposition of Co particles on the den‐Ag/Ti electrode. Polyaniline (PANI) modified den‐Ag/Ti and Ag_xCo_y/Ti electrodes, PANI(n)‐den‐Ag/Ti and PANI(n)‐Ag_xCo_y/Ti, were also obtained by cyclic voltammetry at different numbers of cycles (n) in acidic and alkaline solutions containing aniline, respectively. All these electrodes exhibit high electroactivity for oxygen reduction reaction (ORR) in alkaline solution and their electroactivities follow the order: PANI(15)‐Ag₃₁Co₆₉/Ti>Ag₃₁Co₆₉/Ti>PANI(20)‐den‐Ag/Ti>den‐Ag/Ti. Among them, PANI(15)‐Ag₃₁Co₆₉/Ti displays the highest electrocatalytic activity for ORR with a much positive onset potential of 0 V (vs. Ag/AgCl) and a high ORR current density of 1.2 mA cm^?2 at ?0.12 V (vs. Ag/AgCl). The electrocatalysts are electrochemically insensitive to methanol and ethanol oxidation, and, as cathode electrocatalysts of direct alcohol fuel cells, can resist poisoning by the possible alcohol crossover from the anode.     

Changes in Dissociation Efficiency and Kinetics of Peptide Ions Induced by Basic Residues and Their Mechanistic Implication

With matrix-assisted laser desorption ionization (MALDI) time-of-flight (TOF) mass spectrometry, total abundance of product ions formed by dissociation inside (in-source decay, ISD) and outside (post-source decay, PSD) the source was measured for peptide ions [Y ₅ X + H]⁺, [XY ₅ + H]⁺, [Y ₂ XY ₃ + H]⁺, and [XY ₄ X + H]⁺ (X = tyrosine (Y), histidine (H), lysine (K), and arginine (R) with H for the ionizing proton). α-Cyano-4-hydroxycinammic acid was used as matrix. Product abundance became smaller in the presence of basic residues (H, K, and R), in the order Y > H ≈ K > R. In particular, product abundances in ISD of peptide ions with R were smaller than those with H or K by an order of magnitude, which, in turn, were smaller than that for [Y ₆ + H]⁺ by an order of magnitude. Product abundance was affected by the most basic residue when more than one basic residue was present. A kinetic explanation for the data was attempted under the assumption of quasi-thermal equilibrium for peptide ions in MALDI plume which undergoes expansion cooling. Dramatic disparity in product abundance was found to arise from small difference in critical energy and entropy. Results indicate similar transition structures regardless of basic residues present, where the ionizing proton keeps interacting with a basic site. Further implication of the results on the dissociation mechanism along b-y channels is discussed.     

Polyelectrolyte complexes. VI. Polycation structure,polyanion molar mass,and polyion concentration effects on complex nanoparticles based on poly(sodium 2‐acrylamido‐2‐methylpropanesulfonate)

The formation and characterization of some interpolyelectrolyte complex (IPEC) nanoparticles based on poly(sodium 2‐acrylamido‐2‐methylpropanesulfonate) (NaPAMPS), as a function of the polycation structure, polyanion molar mass, and polyion concentration, were followed in this work. Poly(diallyldimethylammonium chloride) and two polycations (PCs) containing (N,N‐dimethyl‐2‐hydroxypropyleneammonium chloride) units in the backbone (PCA₅ and PCA₅D₁) were used as starting polyions. The complex stoichiometry, (n^?/n⁺)_iso, was pointed out by optical density at 500 nm (OD₅₀₀), polyelectrolyte titration, and dynamic light scattering. IPEC nanoparticle sizes were influenced by the polycation structure and polyanion molar mass only before the complex stoichiometry, which was higher for the more hydrophilic polycations (PCA₅ and PCA₅D₁) and for a higher NaPAMPS molar mass, and were almost independent of these factors after that, at a flow rate of the added polyion of about 0.28 mL × (mL PC)^?1 × h^?1. The IPEC nanoparticle sizes remained almost constant for more than 2 weeks, both before and after the complex stoichiometry, at low concentrations of polyions. NIPECs as stable colloidal dispersions with positive charges in excess were prepared at a ratio between charges (n^?/n⁺) of 0.7, and their storage colloidal stability, as a function of the polycation structure and polyion concentration (from 0.8 to ca. 7.8 mmol/L), was demonstrated. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 2495–2505, 2004     

Direct analysis in real time mass spectrometry (DART‐MS) of highly non‐polar low molecular weight polyisobutylenes

Low molecular weight polyisobutylenes (PIB) with chlorine, olefin and succinic acid end‐groups were studied using direct analysis in real time mass spectrometry (DART‐MS). To facilitate the adduct ion formation under DART conditions, NH₄Cl as an auxiliary reagent was deposited onto the PIB surface. It was found that chlorinated adduct ions of olefin and chlorine telechelic PIBs, i.e. [M + Cl]^? up to m/z 1100, and the deprotonated polyisobutylene succinic acid [M? H]^? were formed as observed in the negative ion mode. In the positive ion mode formation of [M + NH₄]⁺, adduct ions were detected. In the tandem mass (MS/MS) spectra of [M + Cl]^?, product ions were absent, suggesting a simple dissociation of the precursor [M + Cl]^? into a Cl^? ion and a neutral M without fragmentation of the PIB backbones. However, structurally important product ions were produced from the corresponding [M + NH₄]⁺ ions, allowing us to obtain valuable information on the arm‐length distributions of the PIBs containing aromatic initiator moiety. In addition, a model was developed to interpret the oligomer distributions and the number average molecular weights observed in DART‐MS for PIBs and other polymers of low molecular weight. Copyright © 2015 John Wiley & Sons, Ltd.     

A Combined Experimental and Computational Study of Linear Ruthenium(II) Coordination Oligomers with End‐Capping Organic Redox Sites: Insight into the Light Absorption and Charge Delocalization

Two series of linear ruthenium coordination oligomers, [(Ntpy)Ru_n(tppz)_n?1(tpy)]²ⁿ⁺ (mono‐Ntpy series, n=1–3) and [(Ntpy)₂Ru_n(tppz)_n?1]²ⁿ⁺ (bis‐Ntpy series, n=1–3) have been prepared, where Ntpy is the capping ligand 4′‐di‐p‐anisylamino‐2,2′:6′,2′′‐terpyridine, tppz is tetra‐2‐pyridylpyrazine, and tpy is 2,2′:6′,2′′‐terpyridine. The electrochemical measurements evidence oxidation events from both the amine segments and the metal centers and reduction waves from tppz and the capping ligands. Both series complexes display much enhanced light absorption with respect to model complexes without terminal amine units. Density functional theory (DFT) calculations have been performed on both series and time‐dependent DFT (TD‐DFT) calculations have been performed on the bis‐Ntpy‐series compounds (n=1–4) to characterize their electronic structures and excited states and predict the electronic properties of long‐chain polymers. Upon one‐electron oxidation, the mono‐Ntpy‐series monoruthenium and diruthenium complexes display N⁺‐localized transitions and metal‐to‐nitrogen charge‐transfer (MNCT) transitions in the near‐infrared (NIR) region. DFT and TD‐DFT computations on the one‐electron‐oxidized forms of the mono‐Ntpy‐series compounds (n=1–4) provide insight into the nature of the MNCT transitions and the degree of charge delocalization.     

Enhancement of the positive secondary ion yield during low‐energy,dual‐beam depth profiling of polytetrafluoroethylene with 1‐keV Cs+

This work documents the behaviour of the positive secondary ion yield of bulk polytetrafluoroethylene (PTFE) under dual‐beam depth profiling conditions employing 1 keV Ar⁺, Cs⁺ and SF₅⁺. A unique chemical interaction is observed in the form of a dramatic enhancement of the positive secondary ion yield when PTFE is dual‐beam profiled with 1 keV Cs⁺. The distinct absence of such an enhancement is noted for comparison on two non‐fluorinated polymers, polyethylene terephthalate (PET) and polydimethylsiloxane (PDMS). The bulk PTFE was probed using 15‐keV, ⁶⁹Ga⁺ primary ions in dual beam mode under static conditions; 1‐keV Ar⁺ (a non‐reactive, light, noble element), Cs⁺ (a heavier metallic ion known to form clusters) and SF₅⁺ (a polyatomic species) served as the sputter ion species. The total accumulated primary ion dose was of the order of 10¹⁵ ions/cm², which is well beyond the static limit. The enhancement of the positive secondary yield obtained when profiling with 1‐keV Cs⁺ far exceeds that obtained when SF₅⁺ is employed. An explanation of this apparent reactive ion effect in PTFE is offered in terms of polarisation of C? F bonds by Cs⁺ in the vicinity of the implantation site thereby predisposing them to facile scission. The formation of peculiar, periodic Cs_xF_y⁺ (where y = x ? 1) and Cs_xC_yF_z⁺ clusters that can extend to masses approaching 2000 amu are also observed. Such species may serve as useful fingerprints for fluorocarbons that can be initiated via pre‐dosing a sample with low‐energy Cs⁺ prior to static 15‐keV Ga⁺ analysis. Copyright © 2005 John Wiley & Sons, Ltd.     

Synthesis,Stabilization, Functionalization and,DFT Calculations of Gold Nanoparticles in Fluorous Phases (PTFE and Ionic Liquids)

Gold nanoparticles (Au‐NPs) were reproducibly obtained by thermal, photolytic, or microwave‐assisted decomposition/reduction under argon from Au(CO)Cl or KAuCl₄ in the presence of n‐butylimidazol dispersed in the ionic liquids (ILs) BMIm⁺BF₄^?, BMIm⁺OTf^?, or BtMA⁺NTf₂^? (BMIm⁺=n‐butylmethylimidazolium, BtMA⁺=n‐butyltrimethylammonium, OTf^?=^?O₃SCF₃, NTf₂^?=^?N(O₂SCF₃)₂). The ultra small and uniform nanoparticles of about 1–2 nm diameter were produced in BMIm⁺BF₄^? and increased in size with the molecular volume of the ionic liquid anion used in BMIm⁺OTf^? and BtMA⁺NTf₂^?. Under argon the Au‐NP/IL dispersion is stable without any additional stabilizers or capping molecules. From the ionic liquids, the gold nanoparticles can be functionalized with organic thiol ligands, transferred, and stabilized in different polar and nonpolar organic solvents. Au‐NPs can also be brought onto and stabilized by interaction with a polytetrafluoroethylene (PTFE, Teflon) surface. Density functional theory (DFT) calculations favor interactions between IL anions instead of IL cations. This suggests a Au???F interaction and anionic Au_n stabilization in fluorine‐containing ILs. The ¹⁹F NMR signal in BMIm⁺BF₄^? shows a small Au‐NP concentration‐dependent shift. Characterization of the dispersed and deposited gold nanoparticles was done by transmission electron microscopy (TEM/HRTEM), transmission electron diffraction (TED), dynamic light scattering (DLS), UV/Vis absorbance spectroscopy, scanning electron microscopy (SEM), electron spin resonance (ESR), and electron probe micro analyses (EPM, SEM/EDX).     

Relationship between the positive temperature coefficient of resistivity and dynamic rheological behavior for carbon black‐filled high‐density polyethylene

Studies on the relationship between resistivity and dynamic rheological properties of carbon black‐filled high‐density polyethylene (CB/HDPE) composites were carried out. Change of resistivity ρ is associated with the dynamic modulus before the positive temperature coefficient/negative temperature coefficient (PTC/NTC) transition temperature. When the temperature approaches the melting point of HDPE, ρ increases rapidly with a decreasing modulus, corresponding to PTC transition. The resistivity‐dynamic viscoelasticity relationship in the PTC region can be divided into two parts in which the changes of ρ with storage modulus G′ and loss modulus G″ can be described by the scaling laws given by the critical storage modulus and loss modulus G′_c and G″_c; adjustable parameters ρ′_1c, ρ′_2c, ρ″_1c and ρ″_2c; and nonlinear exponents n and m, respectively. The accordance between the experimental data and the scaling functions of the dimensionless quantities (G′/G′_c ? 1) and (G″/G″_c ? 1) in the PTC transition region suggests that the ρ jump may be the result of a modulus‐induced percolation. G′_c and G″_c increase, but the four scaling resistivitis, ρ′_1c, ρ′_2c, ρ″_1c, and ρ″_2c, decrease with increasing CB concentration, implying that the microstructure change of the composites is the determinant factor for the PTC behavior and the resistivity‐dynamic modulus relationship. However, ρ′_2c and ρ″_2c exhibit no scaling dependence. It is suggested that a threshold concentration exists for the modulus of the composites on the basis of examining the plot of both G′_c and G″_c against CB concentration. The scaling laws G′ ～ Φ^x and G″ ～ Φ^y hold for the concentration dependence of the critical modulus when Φ > Φ_c and the estimated values of x and y are 1.10 ± 0.10 and 0.89 ± 0.29, respectively. The resistivity‐dynamic modulus can shift to form a master curve. The horizontal factors a_G′ and a_G″ and the vertical factors a′ and a″ are relevant to the concentration dependence of the dynamic modulus or PTC behavior. It is believed that the former would be involved in changing the mechanical microstructure formed by the complicated interaction of CB particle and polymer segments, and the latter would be involved in the overall changes of conducting a network during the PTC transition region. © 2003 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 41: 983–992, 2003     

Diagnostic cyclisation reactions which follow phosphate transfer to carboxylate anion centres for energised [M-H]- anions of pTyr-containing peptides

The low‐energy negative ion phosphoTyr to C‐terminal ‐CO₂PO₃H₂ rearrangement occurs for energised peptide [M–H]^– anions even when there are seven amino acid residues between the pTyr and C‐terminal amino acid residues. The rearranged C‐terminal ‐CO₂PO₂H(O^–) group effects characteristic S_Ni cyclisation/cleavage reactions. The most pronounced of these involves the electrophilic central backbone carbon of the penultimate amino acid residue. This reaction is aided by the intermediacy of an H‐bonded intermediate in which the nucleophilic and electrophilic reaction centres are held in proximity in order for the S_Ni cyclisation/cleavage to proceed. The ΔG_reaction is +184 kJ mol^?1 with the barrier to the S_Ni transition state being +240 kJ mol^?1 at the HF/6‐31 + G(d)//AM1 level of theory. A similar phosphate rearrangement from pTyr to side chain CO₂^– (of Asp or Glu) may also occur for energised peptide [M–H]^– anions. The reaction is favourable: ΔG_reaction is ?44 kJ mol^?1 with a maximum barrier of +21 kJ mol^?1 (to the initial transition state) when Asp and Tyr are adjacent. The rearranged species R¹‐Tyr‐NHCH(CH₂CO₂PO₃H^–)COR² (R¹ = CHO; R² = OCH₃) may undergo an S_Ni six‐centred cyclisation/cleavage reaction to form the product anion R¹‐Tyr(NH^–). This process has a high energy requirement [ΔG_reaction = +224 kJ mol^?1, with the barrier to the S_Ni transition state being +299 kJ mol^?1]. Copyright © 2011 John Wiley & Sons, Ltd.     

Reactive polythiophenes with zincke salt structure: Synthesis,polymer reactions,and chemical properties

Polythiophenes with reactive Zincke salt structure, such as PThThPy⁺DNP(Cl^?)Th , were synthesized by the oxidation polymerization of 3′‐(4‐N‐(2,4‐dinitrophenyl)pyridinium chloride)‐2,2′:5′,2″‐terthiophene ( ThThPy⁺DNP(Cl^?)Th ) with iron(III) chloride or copper(II) trifluoromethanesulfonate. The reaction of PThThPy⁺DNP(Cl^?)Th with R‐NH₂ (R = n‐hexyl (Hex) and phenyl (Ph)) substituted the 2,4‐dinitrophenyl group into the R group with the elimination of 2,4‐dinitroaniline to yield PThThPy⁺R(Cl^?)Th . Similarly, model compounds, ThThPy⁺R(Cl^?)Th (R = Hex and Ph), were also synthesized. In contrast to the photoluminescent ThThPyTh and PThThPyTh , the compounds PThThPy⁺DNP(Cl^?)Th , PThThPy⁺R(Cl^?)Th , and ThThPy⁺R(Cl^?)Th showed no photoluminescence because their internal pyridinium rings acted as quenchers. Cyclic voltammetry measurements suggested that PThThPy⁺DNP(Cl^?)Th received an electrochemical reduction of the pyridinium and 2,4‐dinitrophenyl groups and oxidation of the polymer backbone. PThThPy⁺DNP(Cl^?)Th was electrically conductive (ρ = 2.0 × 10^?6 S cm^?1) in the non‐doped state. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Density functional study of structural and electronic properties of maximum‐spin n+1Aun−1Ag clusters

The structures and relative stabilities of high‐spin ⁿ⁺¹Au_n?1Ag and ⁿAu_n?1Ag⁺ (n = 2–8) clusters have been studied with density functional calculation. We predicted the existence of a number of previously unknown isomers. Our results revealed that all structures of high‐spin neutral or cationic Au_n?1Ag clusters can be understood as a substitution of an Au atom by an Ag atom in the high‐spin neutral or cationic Au_n clusters. The properties of mixed gold–silver clusters are strongly sized and structural dependence. The high‐spin bimetallic clusters tend to be holding three‐dimensional geometry rather than planar form represented in their low‐spin situations. Silver atom prefers to occupy those peripheral positions until to n = 8 for high‐spin clusters, which is different from its position occupied by light atom in the low‐spin situations. Our theoretical calculations indicated that in various high‐spin Au_n?1Ag neutral and cationic species, ⁵Au₃Ag, ³AuAg and ⁵Au₄Ag⁺ hold high stability, which can be explained by valence bond theory. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Rapid characterization of triterpene saponins from Conyza blinii by liquid chromatography coupled with mass spectrometry

Conyza blinii Le'vl is a medicinal herb used for the treatment of inflammation in Chinese folk medicine. Its major bioactive constituents are triterpene saponins, most of which contain 6–8 sugar residues. In this report, electrospray ionization tandem mass spectrometry fragmentation behaviors of bisdesmosidic triterpene saponins (conyzasaponin A, B, and C) were studied in both positive and negative ion modes with an ion‐trap mass spectrometer. In full scan mass spectrometry, these saponins gave predominant [M–H]^? and [M+Na]⁺ ions, which determined the molecular weights. In tandem mass spectrometry (MSⁿ, n = 2–4), the [M–H]^? and [M+Na]⁺ ions yielded fragments [Y_0α–H]^? and [B_α+Na]⁺, which were diagnostic for the structures of the triterpene skeleton and sugar chains. The structural elucidation was approved by accurate mass data using IT‐TOF‐MS. An interpretation guideline based on MSⁿ (n = 2–4) diagnostic ions was proposed in order to elucidate the chemical structures of unknown triterpene saponins in C. blinii extract. The saponins in C. blinii were separated by liquid chromatography with a methanol/acetonitrile/water solvent system, and then analyzed by ion‐trap and IT‐TOF mass spectrometers. Based on the interpretation guideline, a total of 35 triterpenoid saponins were tentatively identified. Among them, 15 saponins had been previously reported, and the other 20 saponins were reported from Conyza species for the first time. This study indicates that LC/MS is a powerful technology for the rapid characterization of complicated saponins in herbal extracts. Copyright © 2010 John Wiley & Sons, Ltd.