Biodegradation of Polyhydroxyalkanoate Films in Natural Environments

Summary: Biodegradation of film specimens from polyhydroxyalkanoates (PHAs) of two types – poly-3-hydroxybutyrate (PHB) and poly-3-hydroxybutyrate-co-3-hydroxyvalerate (PHBV) – was analysed in different environments: tropical sea waters of the South China Sea (Nha Trang, Vietnam) and soils in the environs of Hanoi (Vietnam), Nha Trang (Vietnam) and Krasnoyarsk (Siberia, Russia). In seawater, the mass loss of the specimens of both types was almost equal. However, in tropical soils, PHB degraded quicker than PHBV. In the Siberian soil, the degradation rate of the PHBV was generally higher than that of PHBV. Analysis of molecular mass of PHA specimens showed its decreasing during biodegradation. In the tropical sea conditions, PHA degrading microorganisms were represented by bacteria of Enterobacter, Bacillus and Gracilibacillus genera. Among PHA degrading bacteria, Burkholderia, Alcaligenes, Bacillus, Mycobacterium and Streptomyces genera were identified in Vietnamese soils, and Variovorax, Stenotrophomonas, Acinetobacter, Pseudomonas, Bacillus and Xanthomonas genera in Siberian soils. Micromycetes of Gongronella, Paecilomyces, Penicillium and Trichoderma genera exhibited PHA degrading activity in Vietnamese soils, and Paecilomyces, Penicillium, Acremonium, Verticillium and Zygosporium genera – in Siberian soils.     

Synthesis, π‐Face‐Selective Aggregation,and π‐Face Chiral Recognition of Configurationally Stable C3‐Symmetric Propeller‐Chiral Molecules with a π‐Core

The C₃‐symmetric propeller‐chiral compounds (P,P,P)‐ 1 and (M,M,M)‐ 1 with planar π‐cores perpendicular to the C₃‐axis were synthesized in optically pure states. (P,P,P)‐ 1 possesses two distinguishable propeller‐chiral π‐faces with rims of different heights named the (P/L)‐face and (P/H)‐face. Each face is configurationally stable because of the rigid structure of the helicenes contained in the π‐core. (P,P,P)‐ 1 formed dimeric aggregates in organic solutions as indicated by the results of ¹H NMR, CD, and UV/Vis spectroscopy and vapor pressure osmometry analyses. The (P/L)/(P/L) interactions were observed in the solid state by single‐crystal X‐ray analysis, and they were also predominant over the (P/H)/(P/H) and (P/L)/(P/H) interactions in solution, as indicated by the results of ¹H and 2D NMR spectroscopy analyses. The dimerization constant was obtained for a racemic mixture, which showed that the heterochiral (P,P,P)‐ 1 /(M,M,M)‐ 1 interactions were much weaker than the homochiral (P,P,P)‐ 1 /(P,P,P)‐ 1 interactions. The results indicated that the propeller‐chiral (P/L)‐face interacts with the (P/L)‐face more strongly than with the (P/H)‐face, (M/L)‐face, and (M/H)‐face. The study showed the π‐face‐selective aggregation and π‐face chiral recognition of the configurationally stable propeller‐chiral molecules.     

Light-induced cis/trans isomerization of cis-[Pd(L-S,O)2] and cis-[Pt(L-S,O)2] complexes of chelating N,N-dialkyl-N′-acylthioureas: key to the formation and isolation of trans isomers

Irradiation cis-[M(Lⁿ-S,O)₂] complexes (M = Pt^II, Pd^II) derived from N,N-dialkyl-N′-benzoylthioureas (HLⁿ) with various sources of intense visible polychromatic or monochromatic light with λ < 500 nm leads to light-induced cis?→?trans isomerization in organic solvents. In all cases, white light derived from several sources or monochromatic blue-violet laser 405 nm light, efficiently results in substantial amounts of the trans isomer appearing in solution, as shown by ¹H NMR and/or reversed-phase HPLC separation in dilute solutions at room temperature. The extent and relative rates of cis/trans isomerization induced by in situ laser light (λ = 405 nm) of cis-[Pd(L²-S,O)₂] was directly monitored by ¹H NMR and ¹⁹⁵Pt NMR spectroscopy of selected cis-[Pt(L-S,O)₂] compounds in chloroform-d; both with and without light irradiation allows the δ(¹⁹⁵Pt) chemical shifts cis/trans isomer pairs to be recorded. The cis/trans isomers appear to be in a photo-thermal equilibrium between the thermodynamically favored cis isomer and its trans counterpart. In the dark, the trans isomer reverts back to the cis complex in what is probably a thermal process. The light-induced cis/trans process is the key to preparing and isolating the rare trans complexes which cannot be prepared by conventional synthesis as confirmed by the first example of trans-[Pd(L-S,O)₂] characterized by single-crystal X-ray diffraction, deliberately prepared after photo-induced isomerization in acetonitrile solution.     

Acute Toxicity of Cresols to Pseudomonas — An Initial Oxygen Uptake Method

Acute toxicity of cresols to both Pseudomonas I and II was estimated by an initial oxygen uptake method. Inhibition studies of toluene and cresols on the oxidation of either benzoate by Pseudomnas I or phenol by Pseudomonas II were analyzed and expressed as oxygen uptake rates. Double reciprocal plots for the inhibiton by cresols of oxygen uptake in Pseudomonas, two physical constants, Vmaxi and Ki, were obtained. The Vmaxi of o?, m? and p-cresol were 80%, 81% and 57% of Vmax in Pseudomnas I, and 10%, 25% and 36% in Pseudomonas II, respectively. Thus, the toxicity to Pseudomonas I decreases in the order p- > o- ≥ m-cresol, whereas to Pseudomonas II, the order is changed to o- > m- > p-cresol. This difference in the toxicity order is probably due to the allosteric effect of p-cresol towards Pseudomonas II. Inasmuch as most compounds inhibit noncompetively, the relative toxicity of different compounds can be estimated by a new toxicity parameter RI (relative inhibition) which is defined as 100/Ki. By comparing the RI value of each compound, the toxicity to Pseudomonas I decreases in the order m-chlorophenol > p-cresol > p-chlorophenol > o-cresol ≥ m-cresol > o-chlorophenol > toluene > phenol.     

The spread of unicyclic graphs with given size of maximum matchings

The spread s(G) of a graph G is defined as s(G) = max _i,j |λ _i − λ _j |, where the maximum is taken over all pairs of eigenvalues of G. Let U(n,k) denote the set of all unicyclic graphs on n vertices with a maximum matching of cardinality k, and U ^*(n,k) the set of triangle-free graphs in U(n,k). In this paper, we determine the graphs with the largest and second largest spectral radius in U ^*(n,k), and the graph with the largest spread in U(n,k).      

Isomorphism in electron-pair densities of atoms

The spherically averaged electron-pair intracule (relative motion) h(u) and extracule (center-of-mass motion) d(R) densities are a couple of densities which characterize the motion of electron pairs in atomic systems. We study a generalized electron-pair density (q; a, b) that represents the probability density function for the magnitude of two-electron vector a r _j +b r _k of any pair of electrons j and k to be q, where a and b are nonzero real numbers. In particular, h(u)=g(u;1, −1) and d(R) = . It is shown that the scaling property of the Dirac delta function and the inversion symmetry of orbitals in atoms due to the central force field generate several isomorphic relations in the electron-pair density (q; a, b) with respect to the two parameters a and b. The approximate isomorphism d(R)≅8h(2R) known in the literature between the intracule and extracule densities is a special case of the present results. Received: 24 May 2000 / Accepted: 18 July 2000 / Published online: 27 September 2000     

Photocatalytic E→Z Contra-Thermodynamic Isomerization of Vinyl Silanes with Lewis Base

Herein, we disclosed the contra-thermodynamic E→Z isomerization of alkenyl silanes, according to the in situ formation of a chromophoric species, in the presence of rac-BINAP as the catalyst. The reaction carried out in DMSO or CH₃CN under irradiation at 405 nm allowed the interconversion of the E-isomers into the Z-congeners in good to excellent yields and outstanding Z/E selectivities, on 18 examples. Finally, the mechanism of this E→Z isomerization was studied to get insight into the reaction mechanism.     

Effect of surfactant adsorption time on the observation of Newton black film in foam film

Observation of Newton black film (NBF) in foam film is possible only with a certain probability W which depends on the concentration C of surfactant in the solution and on the time t_a during which adsorption of surfactant at the solution/air interface has taken place. In the paper, the W(C,t_a) dependence is derived and used to analyze the effect of t_a on the critical surfactant concentration C_c below which NBF in foam film practically cannot be observed. An expression for the C_c(t_a) function is obtained which reveals that C_c decreases substantially with increasing t_a. This expression is found to describe well experimental C_c(t_a) data for foam films obtained from aqueous solution of the therapeutic surfactant INFASURF.     

What to Learn from a Comparative Genomic Sequence Analysis of <Emphasis Type="Italic">L</Emphasis>-Carnitine Dehydrogenase

Summary. In contrast to eukaryotic cells certain eubacterial strains have acquired the ability to utilize L-carnitine (R-(–)-3-hydroxy-4-(trimethylamino)butyrate) as sole source of energy, carbon and nitrogen. The first step of the L-carnitine degradation to glycine betaine is catalysed by L-carnitine dehydrogenase (L-CDH, EC 1.1.1.108) and results in the formation of the dehydrocarnitine. During the oxidation of L-carnitine a simultaneous conversion of the cofactor NAD⁺ to NADH takes place. This catabolic reaction has always been of keen interest, because it can be exploited for spectroscopic L-carnitine determination in biological fluids – a quantification method, which is developed in our lab – as well as L-carnitine production.Based on a cloned L-CDH sequence an expedition through the currently available prokaryotic genomic sequence space began to mine relevant information about bacterial L-carnitine metabolism hidden in the enormous amount of data stored in public sequence databases. Thus by means of homology-based and context-based protein function prediction is revealed that L-CDH exists in certain eubacterial genomes either as a protein of approximately 35 kDa or as a homologous fusion protein of approximately 54 kDa with an additional putative domain, which is predicted to possess a thioesterase activity. These two variants of the enzyme are found on one hand in the genome sequence of bacterial species, which were previously reported to decompose L-carnitine, and on the other hand in gram-positive bacteria, which were not known to express L-CDH. Furthermore we could not only discover that L-CDH is located in a conserved genetic entity, which genes are very likely involved in this L-carnitine catabolic pathway, but also pinpoint the exact genomic sequence position of several other enzymes, which play an essential role in the bacterial metabolism of L-carnitine precursors.     

The Woodward Research Institute,Robert Burns Woodward (1917–1979) and Chemistry behind the Glass Door

Certainly a highlight in the career of Nobel Laureate Professor Robert Burns Woodward (1917–1979) was the foundation of the Woodward Research Institute (WRI) at Ciba AG in Basel, Switzerland, in 1963. Woodward's remarkable accomplishments in the development of organic chemistry altered not only our concepts of molecular structure, but also our comprehension of physico‐chemical properties. In his legacy, Woodward devised innovative strategies for natural product syntheses based on brilliant rationale of their properties and an uncanny sense of Nature. The chemistry community benefited not only at Harvard but especially in Basel and Zürich from Woodward's inspiring lectures and the opportunity to learn from the chemistry Meister. This article highlights parts of the chemistry and some personalities that contributed to forefront investigations at the Woodward Research Institute which began at the former Novartis legacy company, Ciba AG, Basel.     

Order,disorder, and geometrical information indices of molecules

Structural features of various molecular systems with symmetry of point groups ranging fromC ₁ to the icosahedral symmetry are analyzed in the framework of the model suggested previously for the evaluation of order and disorder in the arrangement of atoms in a molecule based on the equationQ = I -P/3n (whereQ is the index of order, andP is the number of independent coordinates needed to fix ann-atomic molecule in the Cartesian coordinate system). TheQ value depends on various structural parameters of the molecule: the number of atoms in it, the symmetry, the dimensionality, and the number of structural degrees of freedom. The disorder indexP/3n = 1 -Q correlates with Shannon's entropy of information, andQ correlates with negentropy or excess information; this makes it possible to useP/3n as a new geometrical information molecular index that is obtained by a nonprobabilistic method. Analysis of the relationship between order and chaos in molecular systems, as well as of the specific order indexq =Q/n, makes it possible to identify both general and specific features of molecules.Translated from Izvestiya Akadernii Nauk. Seriya Khimicheskaya, No. 8, pp. 191219-121927, August, 1996.     

Discrepancy in the near-solute electric dipole moment calculated from the electric field

The electric dipole moment p ( r ) was computed as the integral of the permanent dipole moment of the solvent molecule μ( r ) weighted by the orientational probability distribution Ω( r ; O ) over all orientations, where O is the orientation of the solvent molecule at r . The relationship between Ω( r ; O ) and the potential of the mean torque was derived; p ( r ) is proportional to the electric field E ( r ) under the following assumptions: (1) the van der Waals (vdW) interaction is independent of the orientation of the solvent molecule at r ; (2) the solvent molecule and its electrical effect are modeled as a point dipole moment; (3) the solvent molecule at r is in a region far from the solute; and (4) μE( r ) ? k_BT, where k_B is Boltzmann's constant and T is absolute temperature. The errors caused by calculating near‐solute Ω( r ) and p ( r ) from E ( r ) are unclear. The results show that Ω( r ) is inconsistent with the value calculated from E ( r ) for water molecules in the first and second shells of solute with charge state Q = ±1 e, and a large variation in solvent molecular polarizability γ_mol(r), which appeared in the first valley of 4πr²E(r) for |Q| < 1 e. Nonetheless, p (r) is consistent with the values calculated from E (r) for |Q| ≤ 1 e. The implication is that the assumptions for calculating p ( r ) can be ignored in the calculation of the solvation free energy of biomolecules, as they pertain to protein folding and protein–protein/ligand interactions. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011     

On p -nilpotency and minimal subgroups of finite groups

We call a subgroup H of a finite group G c-supplemented in G if there exists a subgroup K of G such that G = HK and H ∩ K ≤ core(H). In this paper it is proved that a finite group G is p-nilpotent if G is S ₄-free and every minimal subgroup of P ∩ G ^N is c-supplemented in N _G(P), and when p = 2 P is quaternion-free, where p is the smallest prime number dividing the order of G, P a Sylow p-subgroup of G. As some applications of this result, some known results are generalized.     

UPLC–ESI–Q-TOF–MS/MS analysis of anticancer fractions from Ophiocordyceps xuefengensis and Ophiocordyceps sinensis

Ophiocordyceps xuefengensis (O. xuefengensis), a new species of caterpillar fungus, has been identified as the sister taxon of Ophiocordyceps sinensis (O. sinensis). The aims of the present study are to evaluate the anticancer activity and to qualitatively analyze the potential bioactive chemical constituents of O. xuefengensis and O. sinensis, comparatively. An MTT assay was used to evaluate the in vitro anticancer activities of different fractions from O. xuefengensis and O. sinensis. The results show that ethyl acetate fractions of O. xuefengensis and O. sinensis have significant in vitro anticancer activity. These two bioactive fractions were analyzed by ultra-performance liquid chromatography–electrospray ionization with quadrupole–time of flight tandem mass spectrometry technology. A total of 82 compounds and 101 compounds were identified or tentatively characterized in the bioactive fractions of O. xuefengensis and O. sinensis, respectively. Among these compounds, 68 existed in both O. xuefengensis and O. sinensis. A total of 67 compounds were reported in O. xuefengensis and 8 compounds were reported in caterpillar fungus for the first time. This is the first detailed comparative analysis of the in vitro anticancer activity and chemical ingredients between O. xuefengensis and O. sinensis. The application of this work will provide reliable fundamental pharmacological substances for the use of O. xuefengensis by Yao people.     

Comparative study of the phenolic profile,antioxidant and antimicrobial activities of leaf extracts of five Juniperus L. (Cupressaceae) taxa growing in Turkey

Abstract

The purpose of this study was to conduct a comparative evaluation of some biological properties of methanol and water extracts of leaves of five Juniperus taxa growing in Turkey: J. communis L. var. communis (Jcc), J. communis L. var. saxatilis Pall. (Jcs), J. drupacea Labill. (Jd), J. oxycedrus L. subsp. oxycedrus (Joo), J. oxycedrus L. subsp. macrocarpa (Sibth. & Sm.) Ball. (Jom). The antioxidant properties were examined in vitro; both in the DPPH and in the reducing power tests, Joo methanol extract resulted the most active (IC₅₀?=?0.09?±?0.01mg/mL and ASE/mL?=?2.56?±?0.06). In the TBA assay, Jcs methanol extract exhibited the highest activity (IC₅₀?=?4.39?±?0.47?μg/mL). The extracts displayed bacteriostatic activity against Staphylococcus aureus, and Jd methanol extract resulted the most effective (MIC?=?19.53?μg/mL); no effect on the S. aureus biofilm formation was observed. The extracts resulted non-toxic in the Artemia salina lethality bioassay. Finally, the phenolic profile of the methanol extracts was characterized by HPLC-PDA/ESI-MS.     

Contribution of individual flavonoids in Lysimachia species to the antioxidant capacity based on HPLC-DPPH assay

Quantitative phytochemical characterisation of the chief flavonoid aglycones in the hydrolysed Lysimachia extracts revealed the dominance of kaempferol, quercetin and myricetin in L. vulgaris, L. nummularia, L. punctata, L. christinae, L. ciliata and L. clethroides, respectively. Due to the significant radical scavenging capacity of the samples, the contribution of the individual aglycones to the total antioxidant activity became of interest. Therefore, a HPLC method coupled to pre-column DPPH scavenging assay was developed. Differences in the six Lysimachia species’ phenolic composition regarding their participation to the antioxidant activity were revealed. The participation of the three investigated flavonoids to the radical quenching activity was the highest (91.2%) in the L. vulgaris sample, the lowest in L. christinae sample with 29.6%. In L. vulgaris sample, the 76.3% contribution of quercetin to the scavenger capacity was the highest peak area decrement ratio among the investigated samples.     

Band‐Gap Manipulations of Monolayer Graphene by Phenyl Radical Adsorptions: A Density Functional Theory Study

Phenyl radical (Ph^.) adsorption on monolayer graphene sheets is used to investigate the band‐gap manipulation of graphene through density functional theory. Adsorption of a single Ph^. on graphene breaks the aromatic π‐bond and generates an unpaired electron, which is delocalized to the ortho or para position. Adsorption of a second radical at the ortho or para position saturates the radical by electron pairing and results in semiconducting graphene. Adsorption of a second radical at the ortho position (ortho–ortho pairing) is found to be more favorable than adsorption at the para position (ortho–para pairing), and the ortho–ortho pairing has stronger effects on band‐gap opening compared with ortho–para pairing. Adsorption of even numbers of Ph^. on graphene by ortho–ortho and ortho–para pairings, in general, increases the band gap. Our study shows promise of band‐gap manipulation in monolayer graphene by Ph^. adsorption, leading to potential wider applications of graphene.     

Enantioselective analysis of venlafaxine and its active metabolites: A review on the separation methodologies

Venlafaxine (VFX) is a serotonin and norepinephrine reuptake inhibitor chiral drug used in therapy as an antidepressant in the form of a racemate consisting of R‐ and S‐VFX. The two enantiomers of VFX exhibit different pharmacological activities: R‐VFX inhibits both norepinephrine and serotonin synaptic reuptake, whereas S‐VFX inhibits only the serotonin one. R‐ and S‐VFX are metabolized in the liver to the respective R‐ and S‐O‐desmethylvenlafaxine (ODVFX), R‐ and S‐N‐desmethylvenlafaxine (NDVFX), and R‐ and S‐N,O‐didesmethylvenlafaxine (NODVFX). The pharmacological profile of ODVFX is close to that of VFX, whereas the other two chiral metabolites (NDVFX and NODVFX) have lower affinity for the receptor sites. The pharmacokinetics of the VFX enantiomers appear stereoselective, including the metabolism process. In the past 20 years, several studies describing the enantioselective analysis of R‐ and S‐VFX in pharmaceutical formulations and its chiral metabolites in biological matrices were published. These methods encompass liquid chromatography coupled with UV detection, mass spectrometry, or tandem mass spectrometry, and capillary electrophoresis. This paper reviews the published methods used for the determination of the individual enantiomers of VFX and its chiral metabolites in different matrices.     

Scopolamine and atropineN-methyl diastereomer stability.Ab initio calculations onO-formylscopine andO-formyltropine model compounds

Ab initio geometry optimizations at the RHF-21G basis set level were calculated forequatorial andaxial N-methyl diastereomers ofO-formyltropine andO-formylscopine esters and other model compounds. These optimized geometries were then utilized as input for single-point energy calculations using the higher level RHF/6-31G^* basis set to afford a more precise estimation of the total energies and atomic charges. Ethano bridge pinching of theN-protonated tropanyl piperidine moiety pushes the smalleraxial N-proton closer toward the neighboring twoaxial C-H bonds compared with the analogous case for a bulkyaxial N-methyl. Increasedcis 1,3-diaxial interactions in theaxial N-methyl diastereomer destabilize this epimer in favor of theequatorial N-methyl counterpart [e.g., 2.121 kcal/mol lower energy for theequatorial N-methylO-formyltropineN-protonated diastereomer (12) than for theaxial epimer (13)]. Lower pyramidality at nitrogen in the free base maintains the relative stability of theequatorial N-methyl free base diastereomer (14) (1.120 kcal/mol more stable than theaxial free base15). A nonprotonated carbon atom at the apex of a three-membered ring fused to the 6,7-positions of theO-formyltropine skeleton results in severe transannular nonbonding steric interactions involving the neighboringequatorial N-methyl group inN-protonated16 (3.335 kcal/mol less stable than theaxial N-methyl epimer17, where these transannular interactions are reduced due to the smallerequatorial N-H proton). Oxygen atom occupation of the apex of a similar fused three-membered ring retains the same severe transannular nonbonding steric interactions involving the neighboringequatorial N-methyl group inN-protonated18. These transannular interactions now become electrostatically attractive in theN-protonatedaxial N-methyl epimer19 (2.031 kcal/mol more stable than theequatorial epimer). Reduced pyramidality at nitrogen in theO-formylscopine free base reduces the repulsive transannular interaction with the neighboringequatorial N-methyl group compared to that in theN-protonated form. Lowered pyramidality also reduces thecis-1,3-diaxial interactions in theaxial N-methyl epimer, but the nitrogen lone pair is pushed close to the transannular oxygen lone pair as a result (theequatorial N-methyl free base20 is 3.870 kcal/mol more stable than theaxial epimer21). Theseab initio-calculated models ofO-formyltropines andO-formylscopineN-methyl diastereomeric protonated cations and free bases provide stereochemical insight into the relative stabilities of solution-state atropine and scopolamineN-methyl species previously observed by NMR spectroscopic methods.     

Formation of β‐iPP in isotactic polypropylene/ethylene–propylene rubber blends: Effects of preparation method,composition, and thermal condition

The effects of preparation method, composition, and thermal condition on formation of β‐iPP in isotactic polypropylene/ethylene–propylene rubber (iPP/EPR) blends were studied using modulated differential scanning calorimeter (MDSC), wide angle X‐ray diffraction (WAXD), and phase contrast microscopy (PCM). It was found that the α‐iPP and β‐iPP can simultaneity form in the melt‐blended samples, whereas only α‐iPP exists in the solution‐blended samples. The results show that the formation of β‐iPP in the melt‐blended samples is related to the crystallization temperature and the β‐iPP generally diminishes and finally vanishes when the crystallization temperature moves far from 125 °C. The phenomena that the lower critical temperature of β‐iPP in iPP/EPR obviously increases to 114 °C and the upper critical temperature decreases to 134 °C indicate the narrowing of temperature interval, facilitating the formation of β‐iPP in iPP/EPR. Furthermore, it was found that the amount of β‐iPP in melt‐blended iPP/EPR samples is dependent on the composition and the maximum amount of β‐iPP formed when the composition of iPP/EPR blends is 85:15 in weight. The results through examining the effect of annealing for iPP/EPR samples at melt state indicate that this annealing may eliminate the susceptibility to β‐crystallization of iPP. However, only α‐iPP can be observed in solution‐blended samples subjected to annealing for different time. The PCM images demonstrate that an obvious phase‐separation happens in both melt‐blended and solution‐blended iPP/EPR samples, implying that compared with the disperse degree of EPR in iPP, the preparation method plays a dominant role in formation of β‐iPP. It is suggested that the origin of formation of β‐iPP results from the thermomechanical history of the EPR component in iPP/EPR. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 1704–1712, 2007