Mimicking the biomolecular control of calcium oxalate monohydrate crystal growth: effect of contiguous glutamic acids

Scanning confocal interference microscopy (SCIM) and molecular dynamics (MD) simulations were used to investigate the adsorption of the synthetic polypeptide poly(l-glutamic acid) (poly-glu) to calcium oxalate monohydrate (COM) crystals and its effect on COM formation. At low concentrations (1 μg/mL), poly-glu inhibits growth most effectively in ?001? directions, indicating strong interactions of the polypeptide with {121} crystal faces. Growth in ?010? directions was inhibited only marginally by 1 μg/mL poly-glu, while growth in ?100? directions did not appear to be affected. This suggests that, at low concentrations, poly-glu inhibits lattice-ion addition to the faces of COM in the order {121} > {010} ≥ {100}. At high concentrations (6 μg/mL), poly-glu resulted in the formation of dumbbell-shaped crystals featuring concave troughs on the {100} faces. The effects on crystal growth indicate that, at high concentrations, poly-glu interacts with the faces of COM in the order {100} > {121} > {010}. This mirrors MD simulations, which predicted that poly-glu will adsorb to a {100} terrace plane (most calcium-rich) in preference to a {121} (oblique) riser plane but will adsorb to {121} riser plane in preference to an {010} terrace plane (least calcium-rich). The effects of different poly-glu concentration on COM growth (1-6 μg/mL) may be due to variations between the faces in terms of growth mechanism and/or (nano)roughness, which can affect surface energy. In addition, 1 μg/mL might not be adequate to reach the critical concentration for poly-glu to significantly pin step movement on {100} and {010} faces. Understanding the mechanisms involved in these processes is essential for the development of agents to reduce recurrence of kidney stone disease.     

Matrix Gla protein inhibits ectopic calcification by a direct interaction with hydroxyapatite crystals

Mice lacking the gene encoding matrix gla protein (MGP) exhibit massive mineral deposition in blood vessels and die soon after birth. We hypothesize that MGP prevents arterial calcification by adsorbing to growing hydroxyapatite (HA) crystals. To test this, we have used a combined experimental-computational approach. We synthesized peptides covering the entire sequence of human MGP, which contains three sites of serine phosphorylation and five sites of γ-carboxylation, and studied their effects on HA crystal growth using a constant-composition autotitration assay. In parallel studies, the interactions of these sequences with the {100} and {001} faces of HA were analyzed using atomistic molecular dynamics (MD) simulations. YGlapS (amino acids 1-14 of human MGP) and SK-Gla (MGP43-56) adsorbed rapidly to the {100} and {001} faces and strongly inhibited HA growth (IC(50) = 2.96 μg/mL and 4.96 μg/mL, respectively). QR-Gla (MGP29-42) adsorbed more slowly and was a moderate growth inhibitor, while the remaining three (nonpost-translationally modified) peptides had little or no effect in either analysis. Substitution of gla with glutamic acid reduced the adsorption and inhibition activities of SK-Gla and (to a lesser extent) QR-Gla but not YGlapS; substitution of phosphoserine with serine reduced the inhibitory potency of YGlapS. These studies suggest that MGP prevents arterial calcification by a direct interaction with HA crystals that involves both phosphate groups and gla residues of the protein. The strong correlation between simulated adsorption and measured growth inhibition indicates that MD provides a powerful tool to predict the effects of proteins and peptides on crystal formation.     

Modulation of calcium oxalate crystallization by linear aspartic acid-rich peptides

Calcium oxalate monohydrate (COM) kidney stone formation is prevented in most humans by urinary crystallization inhibitors. Urinary osteopontin (OPN) is a prototype of the aspartic acid-rich proteins (AARP) that modulate biomineralization. Synthetic poly(aspartic acids) that resemble functional domains of AARPs provide surrogate molecules for exploring the role of AARPs in biomineralization. Effects of linear aspartic acid-rich peptides on COM growth kinetics and morphology were evaluated by the combination of constant composition (CC) analysis and atomic force microscopy (AFM). A spacer amino acid (either glycine or serine) was incorporated during synthesis after each group of 3 aspartic acids (DDD) in the 27-mer peptide sequences. Kinetic CC studies revealed that the DDD peptide with serine spacers (DDDS) was more than 30 times more effective in inhibiting COM crystal growth than the DDD peptide with glycine spacers (DDDG). AFM revealed changes in morphology on (010) and (-101) COM faces that were generally similar to those previously described for OPN and citrate, respectively. At comparable peptide levels, the effects of step pinning and reduced growth rate caused by DDDS were remarkably greater. In CC nucleation studies, DDDS caused a greater prolongation of induction periods than DDDG. Thus, nucleation studies link changes in interfacial energy caused by peptide adsorption to COM to the CC growth and AFM results. These studies indicate that, in addition to the number of acidic residues, the contributions of other amino acids to the conformation of DDD peptides are also important determinants of the inhibition of COM nucleation and growth.     

Nucleation-controlled growth in polyethylene single crystals: Growth and shape of {100} sectors

The nucleation rate and propagation rate of steps on the {100} faces of polyethylene crystals have been determined. For single crystals, under conditions where the width of the {100} sectors remains constant during growth, it is confirmed that the growth is in regime I or the crossover region between regime I and II. In {110} twinned crystals, the {100} sectors are well developed and the width increases linearly with time; therefore, the growth in the twins must be in regime II. It is shown that the differing growth regimes of {100} faces in single crystals and twins allow the independent determination of the nucleation rate and the propagation rate of steps. The nucleation rate and propagation rate of steps on the {100} faces were determined from measurements of the constant width of the {100} faces in single crystals and the growth rate of the {100} faces in single crystals and twins. The observed rates show abnormal dependence on supercooling and concentration. The results are attributed to a weaker dependence of the constant width of {100} sectors on supercooling and concentration than predicted.     

Growth of polyethylene single crystals from the melt: change in lateral habit and regime I–II transition

Using the technique of extraction, single crystals have been obtained from polyethylene fractions isothermally crystallized from the melt at atmospheric pressure. It has been found that the lateral habit of single crystals changes in the vicinity of the transition temperature of growth regime (regime I–II): lenticular shape elongated in the direction of theb axis (type A) in the range of regime I and truncated lozenge with curved edges of {200} and {110} growth faces (type B) in that of regime II. The transition of lateral habit causes a drastic change in the width of {110} growth faces; {110} growth faces are well developed in type B crystals while they cannot be observed and must be very small in type-A crystals. It has been shown that the growth regime of the small {110} growth face of type-A crystals must be in regime I; hence the regime I–II transition can be explained as the result of this change in lateral habit (width of the {110} growth face).     

Crystal nucleation, growth, and morphology of the synthetic malaria pigment beta-hematin and the effect thereon by quinoline additives: the malaria pigment as a target of various antimalarial drugs

The morphology of micrometer-sized beta-hematin crystals (synthetic malaria pigment) was determined by TEM images and diffraction, and by grazing incidence synchrotron X-ray diffraction at the air-water interface. The needle-like crystals are bounded by sharp {100} and {010} side faces, and capped by {011} and, to a lesser extent, by {001} end faces, in agreement with hemozoin (malaria pigment) crystals. The beta-hematin crystals grown in the presence of 10% chloroquine or quinine took appreciably longer to precipitate and tended to be symmetrically tapered toward both ends of the needle, due to stereoselective additive binding to {001} or {011} ledges. Evidence, but marginal, is presented that additives reduce crystal mosaic domain size along the needle axis, based on X-ray powder diffraction data. Coherent grazing exit X-ray diffraction suggests that the mosaic domains are smaller and less structurally stable than in pure crystals. IR-ATR and Raman spectra indicate molecular based differences due to a modification of surface and bulk propionic acid groups, following additive binding and a molecular rearrangement in the environment of the bulk sites poisoned by occluded quinoline. These results provided incentive to examine computationally whether hemozoin may be a target of antimalarial drugs diethylamino-alkoxyxanthones and artemisinin. A variation in activity of the former as a function of the alkoxy chain length is correlated with computed binding energy to {001} and {011} faces of beta-hematin. A model is proposed for artemisinin activity involving hemozoin nucleation inhibition via artemisinin-beta-hematin adducts bound to the principal crystal faces. Regarding nucleation of hemozoin inside the digestive vacuole of the malaria parasite, nucleation via the vacuole's membranous surface is proposed, based on a reported hemozoin alignment. As a test, a dibehenoyl-phosphatidylcholine monolayer transferred onto OTS-Si wafer nucleated far more beta-hematin crystals, albeit randomly oriented, than a reference OTS-Si.     

Crystallization of CaCO3 in the presence of sulfate and additives: experimental and molecular dynamics simulation studies

The effects of sulfate and BHTPMP (Bis (hexamethylene) triaminepentakis (methylene phosphonic acid)) on the crystallization rate, phase composition and morphology of calcium carbonate have been studied. It was observed that sulfate reduces the nucleation rate and favors the formation of aragonite form in the calcium carbonate precipitate. Moreover, in the presence of sulfate the rhombohedral morphology of the calcite crystals is modified, and during the formation of calcite, the development of {104} faces are more significantly prohibited than {110} faces. In the presence of sulfate together with BHTPMP, the crystallization process is inhibited and the modified morphology and the dominant calcite form are observed in the solid. The results from molecular dynamics simulations show the more strong combination of sulfate with calcite surface, in particular the {104} face, in comparison with the aragonite surface. The strong interaction of BHTPMP with sulfate and the aragonite surface favors the formation of the dominant calcite phase in the precipitate.     

Facet‐Dependent Electrical Conductivity Properties of Silver Oxide Crystals

Ag₂O cubes, truncated octahedra, rhombic dodecahedra, and rhombicuboctahedra were synthesized in aqueous solution. Two tungsten probes were brought into contact with a single particle for electrical conductivity measurements. Strongly facet‐dependent electrical conductivity behaviors have been observed. The {111} faces are most conductive. The {100} faces are moderately conductive. The {110} faces are nearly non‐conductive. When electrodes contacted two different facets of a rhombicuboctahedron, asymmetrical I–V curves were obtained. The {111} and {110} combination gives the best I–V curve expected for a p‐n junction with current flowing in one direction through the crystal but not in the opposite direction. Density of states (DOS) plots for varying number of different lattice planes of Ag₂O match with the experimental results, suggesting that the {111} faces are most electrically conductive. The thicknesses of the thin surface layer responsible for the facet‐dependent properties of Ag₂O crystals have been determined.     

A new equilibrium form of zircon crystal

The surface tensions of the {100}, {110}, {101} and {211} faces are calculated by using Machenzie's method. A new equilibrium form of zircon crystal is then derived on the basis of Wulf's Law. This theoretic form consists of {100} prismatic faces and {211} pyramidal faces, which is different from that of the prediction by the periodic bond chain theory. The discovery of the equilibrium form of zircon crystal provides a clue for understanding of the morphology of zircon crystals formed in deep magma chamber, indicating that zircon morphology is an indicator of crystallization conditions.     

三硼酸锂晶体的生长形态

用自由生长系统研究了三硼酸锂ＬｉＢ_３Ｏ_５（ＬＢＯ）晶体的实际生长形态。实验表明，它的各晶面簇的重要性的顺序为：｛１１０｝＞｛０１１｝＞｛２０１｝＞｛１１１｝。讨论了ＬＢＯ晶体的生长习性与内部结构之间的关系并应用负离子配位多面体理论模型解释了ＬＢＯ晶体的生长形态。     

A shape-persistent polymeric crystallization template for CaCO3

Alanyl-alanine-derived poly(isocyanide)s possess a helical structure that persists even in aqueous media. These rigid macromolecules possess a regular distribution of carboxylic acid-terminated side chains which for the first time allows the study of the templating process involved in biomineralization using a shape-persistent polymeric template. It is demonstrated that in the case where the polymer derived from l-Ala-d-Ala is used the formation of apple core-type calcite crystals is controlled both by nucleation of the (01.1) face and subsequent adsorption of the polymer to the {hk.0} faces of the growing crystal. A small change in the secondary structure of the template that is introduced by using the polymer derived from l-Ala-l-Ala is directly reflected in the lower degree of control over the crystallization process.     

Design of a synthetic foldamer that modifies the growth of calcite crystals

An oligopyridine foldamer, whose structure is dictated by bifurcated hydrogen bonds, was designed to recognize the surface of calcite through three carboxylates, projected from one face of the molecule. At low concentrations of the trimer, elongated calcite crystals with angular, teeth-like growths, identified as {0l} faces, were exclusively formed. In the presence of a related monomer, only calcite rhombohedra are formed, indicating that it is the ordered array of carboxylates that causes the morphological changes, via a specific interaction between the foldamer and the newly expressed faces of the growing calcite crystals.     

单分子膜诱导下尿大分子对草酸钙晶体物相和晶面的调控作用

采用SEM,XRD和FTIR手段比较研究了DPPC单分子膜诱导下尿大分子硫酸软骨素A(C₄S)、硫酸软骨素C(C₆S)和血清蛋白(SA)对尿石盐草酸钙晶体生长的影响.DPPC单分子膜不但优先选择一水草酸钙(COM)物相成核生长,而且优先选择COM的(101)晶面.没有添加剂时,得到的COM为三维的六棱柱和三维的菱形晶体;加入尿大分子抑制剂后,COM的(101)晶面进一步加强,其它晶面减弱,导致二维晶体的形成.COM的(101)晶面为富钙离子晶面,带有过剩的正电荷,而DPPC单分子膜头基带有负电荷,几种尿大分子在实验条件下亦带有负电荷,带负电荷的单分子膜及带负电荷的大分子共同作用于富钙离子的(101)晶面,使得COM的(101)晶面择优生长.C₄S,C₆S和SA的存在均能有效地抑制COM生长.     

Phosphorylation of osteopontin is required for inhibition of calcium oxalate crystallization

Under near-physiological pH, temperature, and ionic strength, a kinetics constant composition (CC) method was used to examine the roles of phosphorylation of a 14 amino acid segment (DDVDDTDDSHQSDE) corresponding to potential crystal binding domains within the osteopontin (OPN) sequence. The phosphorylated 14-mer OPN peptide segment significantly inhibits both the nucleation and growth of calcium oxalate monohydrate (COM), inhibiting nucleation by markedly increasing induction times and delaying subsequent growth by at least 50% at concentrations less than 44 nM. Molecular modeling predicts that the doubly phosphorylated peptide binds much more strongly to both (-101) and (010) faces of COM. The estimated binding energies are, in part, consistent with the CC experimental observations. Circular dichroism spectroscopy indicates that phosphorylation does not result in conformational changes in the secondary peptide structure, suggesting that the local binding of negatively charged phosphate side chains to crystal faces controls growth inhibition. These in vitro results reveal that the interactions between phosphorylated peptide and COM crystal faces are predominantly electrostatic, further supporting the importance of macromolecules rich in anionic side chains in the inhibition of kidney stone formation. In addition, the phosphorylation-deficient form of this segment fails to inhibit COM crystal growth up to concentrations of 1450 nM. However, at sufficiently high concentrations, this nonphosphorylated segment promotes COM nucleation. Dynamic light scattering (DLS) and small-angle X-ray scattering (SAXS) results confirm that aggregation of the nonphosphorylated peptide segment takes place in solution above 900 nM when the aggregated peptide particles may exceed a well-defined minimum size to be effective crystallization promoters.     

Scanning pyroelectric microscopy revealing the spatial polarity distribution in topologically centric crystals of trans-4-chloro-4'-nitrostilbene

Scanning pyroelectric microscopy (SPEM) was applied to investigate grown-in polarity in trans-4-chloro-4'-nitrostilbene (CNS) single crystals. Sectors {011} and {011} were scanned for cross sections perpendicular to the a-direction. A rotational analysis for {011}, {011} faces was performed for a needle like crystal turned around the a-axis. All pyroelectric experiments confirm a bipolar grown-in state of polarity for sector involving the twofold axis b. These measurements agree with theoretical force field and stochastic calculations, predicting a bipolar state and a nearly identical extent of polarity for two different sectors.     

Cellulose triacetate single crystals grown from solution at high temperature without inclusion of solvent

Single crystals of cellulose triacetate II (CTA II) free of crystallization solvent can be grown from dilute solution in mixtures of dibenzyl ether and n-tetradecane. Good results are obtained by using a polymer fraction with a degree of polymerization of 60 and a mixture of 70% n-tetradecane and 30% dibenzyl ether at 245°C. The lamellar crystals produced are lozenge-shaped with the longer diagonal parallel to the a axis of the lattice and with {110} as the growth faces. Twin growth occurs frequently with {110} as a twinning plane and less frequently with {210}.     

Blue or green glowing crystals of the cation [Au{C(NHMe)2}2]+. Structural effects of anions, hydrogen bonding, and solvate molecules on the luminescence of a two-coordinate gold(I) carbene complex

Depending upon the crystallization conditions, [Au{C(NHMe) 2} 2](AsF 6) forms colorless crystals that display a blue or green luminescence. The difference involves the type of solvate molecule that is incorporated into the crystal and the structure of the chains of cations that are formed upon crystallization. The crystallographically determined structures of blue-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(benzene), blue-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(acetone), green-glowing [Au{C(NHMe) 2} 2](AsF 6).0.5(chlorobenzene), and blue-glowing, solvate-free [Au{C(NHMe) 2} 2](EF 6), E = P, As, Sb are reported. All pack with the cations forming extended columns, which may be linear or bent, but all show significant aurophilic interactions. The blue-glowing crystals have ordered stacks of cations with some variation in structural arrangement whereas the green-glowing crystals have disorder in their stacking pattern. Although there is extensive hydrogen bonding between the cations and anions in all structures, in the solvated crystals, the solvate molecules occupy channels but make no hydrogen-bonded contacts. The emission spectra of these new salts taken at 298 and 77 K are reported.     

铅基复合钙钛矿型弛豫铁电单晶的生长基元与生长机理1: PMNT单晶的表面形貌 、负晶结构及生长基元的组装与拆分

铅基复合钙钛矿型弛豫铁电单晶体PMNT的生长基元为多种[BO~6]配位八面体,晶体生长过程可视为多种八面体基元与Pb^2^+的组装过程。这些生长基元向{111}面叠合时易采取法向生长机制,向{001}面叠合时易采取层状生长机制,由此决定了晶体生长速度的各向异性与晶体的形貌。Bridgman法生长的PMNT晶体在生长过程中由内向生长机制形成规则的负晶结构;在晶体生长过程中,在其自然表面上可形成正形与负形两种形貌;在高温退火过程中,由于PbO的分解,晶体表面上可形成类似"蚀象"的构型,这些可从[BO~6]八面体生长基元的组装或拆分方面获得解释。     

铅基复合钙钛矿型弛豫铁电单晶的生长基元与生长机理Ⅰ.PMNT单晶的表面形貌、负晶结构及生长基元的组装与拆分

铅基复合钙钛矿型弛豫铁电单晶体PMNT的生长基元为多种[BO_6]配位八面体,晶体生长过程可视为多种八面体基元与Pb~(2 )的组装过程.这些生长基元向{111}面叠合时易采取法向生长机制,向{001}面叠合时易采取层状生长机制,由此决定了晶体生长速度的各向异性与晶体的形貌.Bridgman法生长的PMNT晶体在生长过程中由内向生长机制形成规则的负晶结构;在晶体生长过程中,在其自然表面上可形成正形与负形两种形貌;在高温退火过程中,由于PbO的分解,晶体表面上可形成类似“蚀象”的构型,这些可从[BO_6]八面体生长基元的组装或拆分方面获得解释.     

Photogenerated defects in shape-controlled TiO2 anatase nanocrystals: a probe to evaluate the role of crystal facets in photocatalytic processes

The promising properties of anatase TiO(2) nanocrystals exposing specific surfaces have been investigated in depth both theoretically and experimentally. However, a clear assessment of the role of the crystal faces in photocatalytic processes is still under debate. In order to clarify this issue, we have comprehensively explored the properties of the photogenerated defects and in particular their dependence on the exposed crystal faces in shape-controlled anatase. Nanocrystals were synthesized by solvothermal reaction of titanium butoxide in the presence of oleic acid and oleylamine as morphology-directing agents, and their photocatalytic performances were evaluated in the phenol mineralization in aqueous media, using O(2) as the oxidizing agent. The charge-trapping centers, Ti(3+), O(-), and O(2)(-), formed by UV irradiation of the catalyst were detected by electron spin resonance, and their abundance and reactivity were related to the exposed crystal faces and to the photoefficiency of the nanocrystals. In vacuum conditions, the concentration of trapped holes (O(-) centers) increases with increasing {001} surface area and photoactivity, while the amount of Ti(3+) centers increases with the specific surface area of {101} facets, and the highest value occurs for the sample with the worst photooxidative efficacy. These results suggest that {001} surfaces can be considered essentially as oxidation sites with a key role in the photoxidation, while {101} surfaces provide reductive sites which do not directly assist the oxidative processes. Photoexcitation experiments in O(2) atmosphere led to the formation of Ti(4+)-O(2)(-) oxidant species mainly located on {101} faces, confirming the indirect contribution of these surfaces to the photooxidative processes. Although this work focuses on the properties of TiO(2), we expect that the presented quantitative investigation may provide a new methodological tool for a more effective evaluation of the role of metal oxide crystal faces in photocatalytic processes.