Hydrophobic contribution of amino acids in peptides measured by hydrophobic interaction chromatography

The adsorption behaviors of amino acids in short chain peptides were examined. Each amino acid, aliphatic or charged, was inserted between the two tryptophans of a peptide, GWWG. The capacity factors of these peptides on an Ocytl-Sepharose column were measured. The adsorption enthalpies, entropies, and the number of repelled water molecules after adsorption were estimated to analyze the contribution of each different amino acid to its hydrophobic adsorption. The peptides inserted with aliphatic amino acids owned the highest capacity factors but released the least amount of adsorption heat among all the peptides under examination. It was found that the hydrophobic contribution of aliphatic amino acids was derived from the entropy gain by repelling the ordered water surrounding them. The insertion of negatively charged amino acids greatly reduced the capacity factors but still repelled a significant number of water molecules after adsorption. This indicated that the water molecules surrounding ionic amino acids were not orderly aligned. The dehydration cost energy but the water repelling did not offer enough entropy to drive the adsorption. Subsequently, lower retention was obtained from the peptides inserted with negatively charged ionic amino acids. The insertion of lysine increased the adsorption enthalpy but repelled no water molecules after adsorption. It was speculated that the inserted lysine still interacted with hydrophobic ligands but disturbed the interaction between ligands and adjacent tryptophans. Therefore, the adsorption enthalpy increased and the capacity factors decreased. Different amino acids contributed to hydrophobic interaction in different ways. The simultaneous analysis of capacity factor, adsorption enthalpy, adsorption entropy, and the number of repelled water molecules facilitated the understanding of the adsorption processes.     

Computer simulation of the distribution of hexane in a lipid bilayer: spatially resolved free energy, entropy, and enthalpy profiles

The partitioning behavior of small molecules in lipid bilayers is important in a variety of areas including membrane protein folding and pharmacology. However, the inhomogeneous nature of lipid bilayers on a nanometer length scale complicates experimental studies of membrane partitioning. To gain more insight in the partitioning of a small molecule into the lipid bilayer, we have carried out atomistic computer simulations of hexane in a dioleoyl phosphatidylcholine model membrane. We have been able to obtain spatially resolved free energy, entropy, enthalpy, and heat capacity profiles based on umbrella sampling calculations at three different temperatures. In agreement with experiment, hexane partitions preferentially to the center of the bilayer. This process is driven almost entirely by a favorable entropy change, consistent with the hydrophobic effect. In contrast, partitioning to the densest region of the acyl chains is dominated by a favorable enthalpy change with a small entropy change, which is consistent with the "nonclassical" hydrophobic effect or "bilayer" effect. We explain the features of the entropy and enthalpy profiles in terms of density and free volume in the system.     

Conformational changes during apoplastocyanin folding observed by photocleavable modification and transient grating

A new method to investigate the initial protein folding dynamics is developed based on a pulsed laser light triggering method and a unique transient grating method. The side chain of the cysteine residue of apoplastocyanin (apoPC) was site-specifically modified with a 4,5-dimethoxy-2-nitrobenzyl derivative, where the CD and 2D NMR spectra showed that the modified apoPC was unfolded. The substituent was cleaved with a rate of about 400 ns by photoirradiation, which was monitored by the disappearance of the absorption band at 355 nm and the increase in the transient grating signal. After a sufficient time from the photocleavage reaction, the CD and NMR spectra showed that the native beta-sheet structure was recovered. Protein folding dynamics was monitored in the time domain with the transient grating method from a viewpoint of the molecular volume change and the diffusion coefficient, both of which reflect the global structural change, including the protein-water interaction. The observed volume decrease of apoPC with a time scale of 270 micros is ascribed to the initial hydrophobic collapse. The increase in the diffusion coefficient (23 ms) is considered to indicate a change from an intermolecular to an intramolecular hydrogen bonding network. The initial folding process of apoPC is discussed based on these observations.     

Dehydration in the folding of reduced cytochrome c revealed by the electron-transfer-triggered folding under high pressure

We determined the activation volume associated with protein folding of reduced cytochrome c from the collapsed intermediate to the native state. The folding rate was followed by a change in the absorption (420 nm) at various pressures between 0.1 and 200 MPa and at various concentrations of denaturant (guanidine hydrochloride) between 3.2 and 4.0 M. Dependence of the folding rate on both these factors revealed that the activation volume at ambient pressure in the absence of denaturant is negative (DeltaVf0 = -14 (+/-8) cm3.mol-1). Such a negative activation volume can be accounted for by a decrease in volume resulting from the dehydration of hydrophobic groups, primarily the heme group. Dehydration, which increases the entropy of the protein system, compensates for a decrease in the entropy accompanying the formation of the more compact and ordered transition state. We, therefore, propose that the positive change in the activation entropy for the folding reaction is due to the dehydration of hydrophobic groups. Furthermore, dehydration entropically promotes the protein folding reaction.     

Time-resolved thermodynamics: heat capacity change of transient species during photoreaction of PYP

Heat capacity changes of short-lived transient species in different time ranges were measured for the first time by using the thermal component of the transient grating and transient lens signals at various temperatures. This method was applied to the transient intermediates of Photoactive Yellow Protein (PYP). The temperature dependence of the enthalpy change shows that the heat capacity of the short-lived intermediate pR2 (also called I1 or PYP(L)) species is the same as that of the ground state (pG) species within our experimental accuracy, whereas that of the long-lived intermediate pB (I2 or PYP(M)) is much larger (2.7 +/- 0.4 kJ/mol K) than that of pG. The larger heat capacity is interpreted in terms of the conformational change of the pB species such as melted conformation and/or exposure of the nonpolar residues to the aqueous phase. This technique can be used for photochemical reactions in general to investigate the conformational change and the hydrophobic interaction in a time domain.     

Changes in thermodynamic quantities upon contact of two solutes in solvent under isochoric and isobaric conditions

The changes in excess thermodynamic quantities upon the contact of two solutes immersed in a solvent are analyzed using the radial-symmetric and three-dimensional versions of the integral equation theory. A simple model mimicking a solute in water is employed. The solute-solute interaction energy is not included in the calculations. Under the isochoric condition, the solute contact always leads to a positive entropy change irrespective of the solute solvophobicity or solvophilicity. The energy change is negative for solvophobic solutes while it is positive for solvophilic ones. Under the isobaric condition, the contact of solvophobic solutes results in system-volume compression but that of solvophilic ones gives rise to expansion. Effects of the compression and expansion on the changes in enthalpy and entropy are enlarged with rising temperature. When the solute solvophobicity is sufficiently high, the entropy change (multiplied by the absolute temperature) can become negative due to the compression, except at low temperatures with the result of an even larger, negative enthalpy change. The expansion in the case of solvophilic solutes leads to a large, positive entropy change accompanied by an even larger, positive enthalpy change. The changes in enthalpy and entropy are strongly dependent on the temperature. However, the changes in enthalpy and entropy are largely cancelled out and the temperature dependency of the free-energy change is much weaker. The authors also discuss possible relevance to the enthalpy-entropy compensation experimentally known for a variety of physicochemical processes in aqueous solution such as protein folding.     

Calorimetric Study of Micelle Formation in Polyethylene Glycol Monooctyl Ether Solution

The micellar solutions of polyethylene glycol monooctyl ethers C8Ej (j = 3,4,5) were investigated by employing the high-precision isothermal titration microcalorimeter at seven temperatures from 10^° to 40^°C. From the thermodynamic analysis of the experimental results, the differential enthalpies of solution of monomer and micelle of C8Ej were obtained separately; they are negative and increase with increasing temperature and decrease with the number j. It was found that C8Ej molecules interact with water molecules more strongly in the monomeric than in micellar state. The enthalpy of micelle formation of C8Ej was positive and decreased with rising temperature, while they increased slightly with increasing j. By comparing the results of ethylene glycol oligomers (C0Ej) with those of C8Ej, it seems reasonable to suppose that the driving force of micelle formation of C8Ej is mainly the increment of entropy caused by dehydration of hydrophilic parts at higher temperatures, while the increment caused by dehydration of hydrophobic parts becomes dominant at lower temperatures in the micellization process.     

Thermodynamics of apoplastocyanin folding: comparison between experimental and theoretical results

It has been experimentally shown that the folding of apoplastocyanin (apoPC) accompanies a very large enthalpic loss [N. Baden et al., J. Chem. Phys. 127, 175103 (2007)]. This implies that an even larger entropic gain occurs in stabilizing the folded structure to overcome the enthalpic loss. Here, we calculate the water-entropy gain upon the folding of apoPC using the angle-dependent integral equation theory combined with the multipolar water model and the recently developed morphometric approach. It is demonstrated that the calculated value is in quantitatively good accord with the value estimated from the experimental data by accounting for the conformational-entropy loss. According to a prevailing view, the water adjacent to a hydrophobic group is unstable especially in terms of the rotational entropy and the folding is driven primarily by the release of such unfavorable water to the bulk through the burial of nonpolar side chains. We show, however, that the resultant entropic gain is too small to elucidate the experimental result. The great entropic gain observed is ascribed to the reduction in the restriction for the translational motion of water molecules in the whole system.     

Non-isothermal kinetic and thermodynamic study for the dehydration of copper(II) chloride dihydrate and nickel chloride hexahydrate

Non-isothermal dehydration of copper chloride dihydrate and nickel chloride hexahydrate were studied by using TG, DTG, DTA and DSC measurements. The copper chloride salt loses its two water molecules in one step while nickel chloride salt dehydrates in three consecutive steps. The first two steps involve the loss of 4 water molecules in two overlapped steps while the third step involves the dehydration of the dihydrate salt to give the anhydrous NiCl₂. Activation energies (ΔE) and the frequency factor (A) were calculated from DTG and DTA results. We have also calculated the different thermodynamic parameters, e.g. enthalpy change (ΔH), heat capacity (C _p) and the entropy change (ΔS) from DSC measurements for both reactants. The isothermal rehydration of the completely dehydrated salts was studied in air and under saturated vapour pressure of water. Anhydrous nickel chloride was found to rehydrate in three consecutive steps while the copper salt rehydrated in one step.     

Thermodynamic study of poly(N-vinyl caprolactam) hydration at temperatures close to lower critical solution temperature

The lower critical solution temperature of aqueous solutions of poly(N-vinyl caprolactam) falls in the 305–307 K range and depends on the molecular weight of the polymer. The thermodynamic functions of mixing at 298 K have been calculated from measurements of vapor pressures and heats of dissolution and dilution. Partial Gibbs energy, partial enthalpy, and partial entropy of mixing were negative over the entire range of composition. Increasing temperature resulted in a decrease in the exothermal character of mixing. Excessive heat capacity values, calculated from the dependencies of enthalpy of mixing on temperature, were positive over the entire composition range. Heat capacity of dilute solutions was measured at 298 K and partial heat capacity of poly(N-vinyl caprolactam) at infinite dilution was shown to be positive. The data obtained point out the hydrophilic and hydrophobic hydration of poly(N-vinyl caprolactam) in aqueous solutions. Hydrophobic hydration dominates at temperatures close to binodal curve. As a result, the mutual mixing of the polymer with water is decreased and phase separation takes place.     

Temperature dependence of dimerization and dewetting of large-scale hydrophobes: a molecular dynamics study

We studied by molecular dynamics simulations the temperature dependence of hydrophobic association and drying transition of large-scale solutes. Similar to the behavior of small solutes, we found the association process to be characterized by a large negative heat capacity change. The origin of this large change in heat capacity is the high fragility of hydrogen bonds between water molecules at the interface with hydrophobic solutes; an increase in temperature breaks more hydrogen bonds at the interface than in the bulk. With increasing temperature, both entropy and enthalpy changes for association strongly decrease, while the change in free energy weakly varies, exhibiting a small minimum at high temperatures. At around T=Ts=360 K, the change in entropy is zero, a behavior similar to the solvation of small nonpolar solutes. Unexpectedly, we find that at Ts, there is still a substantial orientational ordering of the interfacial water molecules relative to the bulk. Nevertheless, at this point, the change in entropy vanishes due to a compensating contribution of translational entropy. Thus, at Ts, there is rotational order and translational disorder of the interfacial water relative to bulk water. In addition, we studied the temperature dependence of the drying-wetting transition. By calculating the contact angle of water on the hydrophobic surface at different temperatures, we compared the critical distance observed in the simulations with the critical distance predicted by macroscopic theory. Although the deviations of the predicted from the observed values are very small (8-23%), there seems to be an increase in the deviations with an increase in temperature. We suggest that these deviations emerge due to increased fluctuations, characterizing finite systems, as the temperature increases.     

Thermodynamics of micellization of tetraethylammonium perfluorooctylsulfonate in water

Conductivity, density, and sound velocity measurements as functions of temperature were made on tetraethylammonium perfluorooctylsulfonate solutions to determine the Krafft point, the dependence on temperature of the critical micelle concentration, the micellar ionization degree, and several thermodynamic properties: Gibbs free energy, enthalpy and entropy of micellization, apparent molar partial volume, thermal expansion coefficient, and the adiabatic compressibility factor of both micellized and unmicellized surfactants. Important changes occur at about 30 degrees C. Results are interpreted on the basis of dehydration of surfactant on micellization and on temperature increase.     

Study of hydrophobic interaction adsorption of bovine serum albumin under overloaded conditions using flow microcalorimetry

The adsorption behavior of bovine serum albumin (BSA) on a Sepharose based hydrophobic interaction support has been studied. Flow microcalorimetry has been used to determine the heat of adsorption under overloaded chromatographic conditions. These data have been complemented with capacity factor and isotherm measurements to provide insight on the mechanisms of adsorption. The heat of adsorption data have confirmed that the hydrophobic interaction adsorption of BSA under linear isotherm conditions is driven by entropy changes. Under overloaded (non-linear) conditions, however, it has been shown that the changes in enthalpy can drive adsorption; this behavior is not evident from analyses of capacity factor data. It is postulated that for BSA adsorption on the Sepharose derivative of interest, attractive force interactions between adsorbed protein molecules drive the adsorption process under overloaded conditions in a high (NH4)2SO4 environment. It is further postulated that these interactions are due to a change in confirmation of the adsorbed protein under these conditions.     

Temperature dependence of three-body hydrophobic interactions: potential of mean force, enthalpy, entropy, heat capacity, and nonadditivity

Temperature-dependent three-body hydrophobic interactions are investigated by extensive constant-pressure simulations of methane-like nonpolar solutes in TIP4P model water at six temperatures. A multiple-body hydrophobic interaction is considered to be (i) additive, (ii) cooperative, or (iii) anti-cooperative if its potential of mean force (PMF) is (i) equal to, (ii) smaller than, or (iii) larger than the corresponding pairwise sum of two-methane PMFs. We found that three-methane hydrophobic interactions at the desolvation barrier are anti-cooperative at low to intermediate T, and vary from essentially additive to slightly cooperative at high T. Interactions at the contact minimum are slightly anti-cooperative over a wider temperature range. Enthalpy, entropy, and heat capacity are estimated from the computed PMFs. Contrary to the common expectation that burial of solvent-accessible nonpolar surface area always leads to a decrease in heat capacity, the present results show that the change in heat capacity upon three-methane association is significantly positive at the desolvation barrier and slightly positive at the contact minimum. This suggests that the heat capacity signature of a hydrophobic polymer need not vary uniformly nor monotonically with conformational compactness. Ramifications for protein folding are discussed.     

Solvation of hydrophobes in water and simple liquids

The solvation of nonpolar molecules in water and that in simple liquids are compared and contrasted. First, solvation thermodynamics is reviewed in a way that focuses on how the enthalpy and entropy of solvation depend on the choice of microscopic volume change v in the solvation process--including special choices v being zero (fixed-volume condition) and v being the partial molecular volume of a solute molecule (fixed-pressure condition)--and how the solvation quantities are related with temperature derivatives of the solvation free energy. Second, the solvation free energy and the solvation enthalpy of a Lennard-Jones (LJ) atom in model water are calculated in the parameter space representing the solute size and the strength of the solute-solvent interaction, and the results are compared with those for an LJ atom in the LJ solvent. The solvation diagrams showing domains of different types of solvation in the parameter space are obtained both for the constant-volume condition and for the constant-pressure condition. Similarities between water and the simple liquid are found when the constant-volume solvation is considered while a significant difference manifests itself in the fixed-pressure solvation. The domain of solvation of hydrophobic character in the parameter space is large in the constant-volume solvation both for water and for the simple liquid. When switched to the constant-pressure condition accompanying a microscopic volume change, the hydrophobic domain remains large in water but it becomes significantly small in the simple liquid. The contrasting results are due to the smallness of the thermal pressure coefficient of water at low temperatures.     

Hydration of humic and fulvic acids studied by DSC

Qualitative and quantitative aspects of hydration of four humic acids (HA) and three fulvic acids (FA) originating from different sources were investigated. DSC experiments at subambient temperatures were carried out in order to monitor differences in ice behavior originating from freezable water surrounding humic molecules. It was found that kinetic effects play a significant role in hydration processes of both HA and FA. In fact, the hydration took part over 21?days which was detected as a progressive decrease in ice melting enthalpy. Simultaneously, the peak shapes and positions changed indicating structural changes in the physical structure of the humic substances. In case of FA, the dependency of melting enthalpy on water concentration showed a linear trend resembling a complete hydration previously observed for water-soluble hydrophilic polymers. In contrast, the melting enthalpy of some HA increased in a step-like way with increasing water content, suggesting preservation of original hydrophobic scaffold during the hydration. The differences between the rather young FA and the rather old HA lead to the conclusion that water can play a significant role in processes of humification. We assume that separation of hydrophobic and hydrophilic domains and thus increase in nanoscale heterogeneity represents an important physical contribution to the overall humification process. It was also demonstrated that the higher content of oxygen in humic molecules is not the only indicator of higher water holding capacity. Instead the porosity of humic matrix seems to contribute as additional parameter into these processes.     

Structural, volumetric, and thermodynamic characterization of a micellar sphere-to-rod transition

The thermotropic sphere-to-rod transition of nonionic surfactants was characterized in terms of a large set of parameters: the transition temperature and width, the partial volume, coefficient of thermal volume expansion, enthalpy, isobaric heat capacity, and structural parameters, such as radius of gyration and hydrodynamic radius. Data were recorded as a function of concentration of surfactants in H2O and in D2O. To this end, pressure perturbation calorimetry (PPC), small angle neutron scattering (SANS), dynamic light scattering (DLS), differential scanning calorimetry (DSC), and isothermal titration calorimetry (ITC) were applied in a study of aqueous solutions containing myristyl, tridecyl, and lauryl maltoside and heptaethyleneglycoltetradecyl ether (C14EO7). Small changes in the thermodynamic and volumetric parameters (e.g., the partial volume change is approximately +2 per thousand) are discussed in detail as the result of three effects governing the transition. (i) Reduction of the water accessible hydrophobic surface area (ASA(ap)) drives the transition. (ii) Shrinking in headgroup size by thermal dehydration triggers the transition. (iii) Hypothesized gradual ordering of the chains may control the effect of chain length on the transition.     

Measuring conformational stability of proteins using an optimized temperature-controlled capillary electrophoresis approach.

The thermal denaturation process of a model protein, bovine beta-lactoglobulin, was analyzed using capillary zone electrophoresis (CZE). For this purpose, a commercial CE apparatus was improved, allowing efficient control and accurate measurement of the temperature up to 95 degrees C. Under various pH conditions, transition temperature (Tm), enthalpy change (delta H) and entropy change (delta S) associated with the thermal denaturation were determined. Moreover, the technique is unique in its ability to estimate the heat capacity change (delta Cp). This work shows that CZE, performed even when electroosmotic flow occurs, is an innovative approach for determining the stability curves of proteins. Accordingly, CZE is a powerful tool to study protein unfolding/folding quickly and with minimal sample requirements.     

Improvement in thermodynamic characteristics of sodium acetate trihydrate composite phase change material with expanded graphite

In this study, three different volume expansion ratios of expanded graphite (EG) are prepared and investigated to enhance the heat transfer efficiency of the sodium acetate trihydrate (SAT) composites. A series of SAT composite phase change materials (CPCMs) with EG were prepared. The influence of volume expansion ratio and mass fraction of EG on thermodynamic characteristics of SAT CPCMs was examined, including thermal conductivity, phase change temperature, enthalpy, latent heat storage and release time, and the degree of supercooling. Results showed that SAT CPCMs can be absorbed adequately by EG, and EG could enhance the heat transfer efficiency effectively. But it also brought some problems with the addition of all the three volume expansion ratios of EG, such as the poor enthalpy and serious supercooling. Particularly, the situation gets worse with the increase in mass and expansion ratio of EG. Therefore, it is better to choose the EG with proper expansion ratio or reduce the proportion of the EG which possesses higher expansion ratio. Besides, thermal cycling test and thermogravimetric analysis revealed that the SAT CPCMs with 3 mass% EG showed a good thermal stability.

     

Enthalpy,volume and structural relaxation in glass-forming silicate melts

Through structural relaxation, the configuration of a viscous liquid changes to allow the Gibbs free energy to be minimum in response to temperature variations. In this review, the practical importance of relaxation in silicate melts is first illustrated by configurational heat capacity and entropy and their connection with viscosity via Adam-Gibbs theory. Relaxation effects on thermal expansion and compressibility are then examined, and the similarity of the kinetics of structural, enthalpy and volume relaxation is pointed out. Turning to microscopic mechanisms, we finally stress the importance of Si-O bond exchange and its decoupling with the motion of network-modifying elements near the glass transition. This revised version was published online in August 2006 with corrections to the Cover Date.