Fluorous-based carbohydrate microarrays

The success of microarrays, such as DNA chips, for biosample screening with minimal sample usage has led to a variety of technologies for assays on glass slides. Unfortunately, for small molecules, such as carbohydrates, these methods usually rely on covalent bond formation, which requires unique functional handles and multiple chemical steps. A new simpler concept in microarray formation is based on noncovalent fluorous-based interactions. A fluorous tail is designed not only to aid in saccharide purification but also to allow direct formation of carbohydrate microarrays on fluorous-derivatized glass slides for biological screening with lectins, such as concanavalin A. The noncovalent interactions in the fluorous-based array are even strong enough to withstand the detergents used in assays with the Erythrina crystagalli lectin. Additionally, the utility of benzyl carbonate protecting groups on fucose building blocks for the formation of alpha-linkages is demonstrated.     

糖芯片合成中的固定化策略*

近年来,糖芯片作为一种强有力的生化分析工具在糖生物学的研究中获得了越来越广泛的应用。在糖芯片制备过程中,糖探针在基板表面的固定是最重要也是最难的一步,它不仅要能牢固的固定在芯片基板上,还必须具有足够的生物活性,因此糖芯片在制备过程中制定合适的糖探针固定化策略一直是一个难点,也是极具挑战性的研究热点。本文首先概述了近几年糖芯片作为一种强有力的生化分析工具在糖生物学研究中的应用。详尽介绍了三种将糖探针固定在固相基片表面的策略：（1）非位点特异性、非共价的方式;（2）位点特异性、非共价的方式;（3）位点特异性、共价的方式。并对糖芯片固定化策略的发展进行了展望。     

Short-Chained Platinum Complex Catalyzed Hydrosilylation under Thermomorphic Conditions: Heterogeneous Phase Separation at Ice Temperature

Homogeneous catalysts PtCl₂[5,5′-bis-(n-ClCF₂(CF₂)₃CH₂OCH₂)-2,2′-bpy] (2A) and PtCl₂[5,5′-bis-(n-HCF₂(CF₂)₃CH₂OCH₂)-2,2′-bpy] (2B), which contained short fluorous chains, were synthesized and used in catalysis of hydrosilylation of alkynes. In these reactions the thermomorphic mode was effectively used to recover these catalysts from the reaction mixture up to eight cycles by taking advantage of heterogeneous phase separation at ice temperature. This kind of catalysis had previously been observed in fluorous catalysts of platinum containing about 50% F-content, but in this work the percentage of F-content is decreased to only about 30%, by which we termed them as “very light fluorous”. Our new type of catalyst with limited number of F-content is considered as the important discovery in the fluorous technology field as the reduced number of fluorine atoms will help to be able to comply the EPA 8-carbon rule. The metal leaching after the reaction has been examined by ICP-MS, and the testing results show the leaching of residual metal to be minimal. Additionally, comparing these results to our previous work, fluorous chain assisted selectivity has been observed when different fluorous chain lengths of the catalysts are used. It has been found that there exists fluorous chain assisted better selectivity towards β-(E) form in the Pt-catalyzed hydrosilylation of non-symmetric terminal alkyne when the Pt catalyst contains short fluorous chain (i.e., 4 Cs). Phenyl acetylenes showed the opposite regioselectivity due to pi-pi interaction while using the same catalyst via Markovnikov’s addition to form terminal vinyl silane, which is then a major product for Pt-catalyzed hydrosilylation of terminal aryl acetylene with triethylsilane. Finally, the kinetic studies indicate that the insertion of alkyne into the Pt-H bond is the rate-determining step.     

Mannich-type reaction of (1-methoxy-2-methylpropenyloxy)trimethylsilane with arylaldehydes and aromatic amines catalyzed by perfluorinated rare earth metal salts in fluorous phase

In this paper, we describe a useful Mannich-type reaction in fluorous phase. By use of perfluorodecalin (C₁₀F₁₈, cis- and trans-mixture) as a fluorous solvent and perfluorinated rare earth metal salts such as Sc(OSO₂C₈F₁₇)₃ or Yb(OSO₂C₈F₁₇)₃ (2.0 mol%) as a catalyst, the Mannich-type reaction of arylaldehydes with aromatic amines and (1-methoxy-2-methylpropenyloxy)trimethylsilane can be performed for many times without reloading the catalyst and the fluorous solvent.     

Synthesis of fluorous tags for incorporation of reducing sugars into a quantitative microarray platform

Carbohydrate microarrays can map out key interactions of carbohydrates and proteins in a high-throughput manner, but require the inclusion of a range of sugars for their optimal use. Here we present the synthesis and use of a new hydroxylamine-modified fluorous tag that allows the facile incorporation of reducing sugars into a noncovalent fluorous-based microarray after simple purification by fluorous solid-phase extraction (FSPE). The microarray supports quantitative screening against carbohydrate-binding proteins.     

Ytterbium perfluorooctanesulfonates catalyzed synthesis of benzimidazole derivatives in fluorous solvents

Catalytic condensation of o-phenylenediamine and aldehydes was accomplished using rare earth(III)perfluorooctane sulfonates (RE(OPf)₃), RE = Sc, Y, La ∼ Lu) as catalysts in fluorous solvents. Ytterbium perfluorooctanesulfonates (Yb(OPf)₃) catalyzes the high-efficient synthesis of benzimidazole derivatives in fluorous solvents. By simple separation, fluorous phase containing only catalyst can be reused several times.     

p-Alkoxyphenyl-type heavy fluorous tag for the preparation of carbohydrate units

Carbohydrate glycosyl acceptor and donor moieties were synthesized efficiently by using the fluorous tag method. The p-alkoxyphenyl-type heavy fluorous tag was stable under all the reaction conditions used in the preparation of the various carbohydrate units. Each synthetic intermediate carrying the fluorous tag could be obtained in a simple straightforward manner by partition between fluorous and organic solvents.     

Heptadecafluorooctanesulfonic acid (C8F17SO3H) catalyzed intramolecular hydroamination of olefinic sulfonamides in fluorous biphase system (FBS)

A practical, efficient, and environmentally benign intramolecular hydroamination of olefinic sulfonamides was carried out in fluorous biphase system (FBS) using commercially available heptadecafluorooctanesulfonic acid (C₈F₁₇SO₃H) as a catalyst and perfluorodecaline (C₁₀F₁₈, cis- and trans- mixture) as a fluorous solvent to produce the corresponding cyclic products in good yields. The Brønsted acid of C₈F₁₇SO₃H is easily recovered and recycled at least five times.     

Rare earth(III) perfluorooctanesulfonates catalyzed Friedel-Crafts alkylation in fluorous biphase system

The catalyst of rare earth(III) perfluorooctanesulfonates (RE(OSO₂C₈F₁₇)₃, RE = Sc, Y, La-Lu) were prepared from either rare earth chlorides(III) or oxides and perfluorooctanesulfonic acid. The perflates thus obtained act as novel catalysts for Friedel-Crafts alkylation in fluorous biphasic system. Perfluorohexane (C₆F₁₄), perfluoromethylcyclohexane (C₇F₁₄), perfluorotoluene (C₇F₈), perfluorooctane (C₈F₁₈), perfluorooctyl bromide (C₈F₁₇Br) and perfluorodecalin (C₁₀F₁₈, cis- and trans-mixture) can be used as fluorous solvents for this reaction. By simple separation of the fluorous phase containing only catalyst, alkylation can be repeated many times.     

Fluorous glycol derivatives: novel carbonyl protective groups

Fluorous glycol derivatives 5 were prepared and evaluated as reagents for the protection of carbonyl groups for use in fluorous synthesis. The acetals formed from fluorous diol 5b (Rf=n-C₈F₁₇) with carbonyl compounds can be separated and purified by simple fluorous-organic extraction.     

Mono- vs. di-fluorous-tagged glucosamines for iterative oligosaccharide synthesis

Fluorous-tagged protecting groups are attractive tools for elongating carbohydrate chains in oligosaccharide synthesis. To eliminate the accumulation of failed sequences during automated oligosaccharide synthesis conditions, an additional C₈F₁₇ ester derived protecting group was attached to the glycosyl donor to better retain the desired doubly tagged glycosylation product on fluorous solid-phase extraction (FSPE) cartridges. Initial studies show that the double-fluorous-tagging strategy offers a robust enough separation using a commercial FSPE cartridge using simple gravity filtration to separate the desired product from the singly fluorous-tagged starting materials and their decomposition products. In addition, removal of the fluorous acetate and its by-products after sodium methoxide treatment and neutralization required only dissolution of the desired sugar in toluene and subsequent removal of the toluene layer from the denser fluorous by-products.     

Application of a Grubbs–Hoveyda Metathesis Catalyst Noncovalently Immobilized by Fluorous–Fluorous Interactions

A Grubbs–Hoveyda metathesis catalyst bearing a tris(perfluoroalkyl)silyl tag for efficient noncovalent attachment to fluorous silica gel (FSG) was synthesized and employed in ring‐closing metathesis (RCM) reactions in CH₂Cl₂. After the reaction, a solvent switch to a polar system allowed for recovery of the catalyst by filtration and its reuse. The approach was demonstrated for a number of different substrates. Furthermore, it was shown that the application of this catalytic system yielded products with low ruthenium content.     

7-Triazolylcoumarin-based fluorescent tag system for stepwise,comparative assessment of small molecule microarrays

The potential use of a fluorescent tag system based on 7-(1H-1,2,3-triazol-4-yl)coumarin fluorophore having a fluorous moiety and a polyethylene glycol (PEG) spacer at opposite ends as a tool for a stepwise and comparative evaluation of the fabrication process of small molecule microarrays was illustrated by the qualitative analysis of the results of the fluorescence detection obtained from the microarray experiments using the tagged biotins and streptavidin-Cy3 (and avidin-Cy5) as the binding partners.     

Fluorous-based peptide microarrays for protease screening

As ever more protease sequences are uncovered through genome sequencing projects, efficient parallel methods to discover the potential substrates of these proteases becomes crucial. Herein we describe the first use of fluorous-based microarrays to probe peptide sequences and begin to define the scope and limitations of fluorous microarray technologies for the screening of proteases. Comparison of a series of serine proteases showed that their ability to cleave peptide substrates in solution was maintained upon immobilization of these substrates onto fluorous-coated glass slides. The fluorous surface did not serve to significantly inactivate the enzymes. However, addition of hydrophilic components to the peptide sequences could induce lower rates of substrate cleavage with enzymes such as chymotrypsin with affinities to hydrophobic moieties. This work represents the first step to creating robust protease screening platforms using noncovalent microarray interface that can easily incorporate a range of compounds on the same slide.     

Rare earth(III) perfluorooctane sulfonates and perfluorooctanesulfonic acid in fluorous solvents: Novel and recyclable catalytic systems for Friedel-Crafts acylation of unactivated benzenes

Catalytic Friedel-Crafts acylation of benzene and unactivated benzenes, such as chlorobenzene and fluorobenzene, was successfully accomplished using rare earth(III) perfluorooctane sulfonates (RE(OPf)₃), RE = Sc, Y, La ∼ Lu) and perfluorooctanesulfonic acid (PfOH) as catalysts in fluorous solvents. Solutions of Yb(OPf)₃ and PfOH in perfluorodecalin (C₁₀F₁₈, cis and trans-mixture) are the most suitable catalytic system, with catalyst loading as low as 0.4%mol leading to clean, high-yielding benzoylation of a variety of unactivated benzenes. By simple separation of the fluorous phase containing only catalyst, acylation can be repeated several times.     

Total synthesis of cucurbitoside A using a novel fluorous protecting group

The first total synthesis of cucurbitoside A was achieved using a new fluorous N-phenylcarbamoyl (^FCar) protecting group. The ^FCar group was introduced into carbohydrates in high yield and was selectively removed with Bu₄NNO₂ without damaging other acyl protecting groups. The synthetic intermediates were easily isolated by fluorous solid-phase extraction.     

Synthesis of two new chiral fluorous bis(oxazolines) and their applications as ligands in catalytic asymmetric reactions

Two new chiral fluorous bis(oxazolines) with a fluorous content of 56.9% and 59.3%, respectively, have been prepared starting from (S)-serine and (S)-tyrosine. Applications of these compounds as fluorous box ligands in asymmetric alkylations gave ees up to 92%, and in allylic oxidations ees up to 50%. Recycling and reuse of the ligands in asymmetric alkylation and of the catalytic system in allylic oxidation gave the same enantioselectivities.     

Practice of fluorous biphase chemistry: convenient synthesis of novel fluorophilic ethers via a Mitsunobu reaction

The evolution of the term fluorous is addressed first, then a concise terminology is proposed, including fluorous partition coefficient, specific fluorophilicity and fluorousness. Some examples are shown for the design of higher generation fluorophilic molecules, involving Class I to Class III ponytails. Fluorophilic ethers of the structure of ArC(CF₃)₂O(CH₂)_m(CF₂)_nF (m=1, n=1, 7; m=3, n=8) are obtained in high yields, when 2-aryl-1,1,1,3,3,3-hexafluoro-propanols are reacted either with trifluoroethyl- and 1H,1H-perfluorooctyl triflates (NaH/DMF, Williamson ether synthesis) or with 3-perfluorooctyl-propanol (Ph₃P/EtO₂CNNCO₂Et/PhCF₃, Mitsunobu reaction), respectively. Fluorophilic phenol- and perfluoro-tert-butyl ethers can also be prepared effectively by the latter method. In case of higher homologues (n=7, 8) product isolation can be facilitated using fluorous extraction (C₆F₁₄/CH₃OH). Specific fluorophilicity values of target molecules are estimated using a 2D method and compared with experimentally determined ones.     

Highly enantioselective aldehyde-nitroolefin Michael addition reactions catalyzed by recyclable fluorous (S) diphenylpyrrolinol silyl ether

A recyclable and reusable (S) diphenylpyrrolinol silyl ether I organocatalyst bearing a n-C₈F₁₇ fluorous tag has been demonstrated for promoting the asymmetric Michael addition reactions of a wide range of aldehydes with both aryl and alkyl-substituted nitroolefins and excellent levels of enantio- and diastereoselectivities are achieved. The catalyst I can be conveniently recovered by fluorous solid-phase extraction and subsequently reused (up to eight cycles) without significant loss of its catalytic activity and stereoselectivity for the process.     

Recyclable fluorous-tag assisted two-directional oligosaccharide synthesis enabled by interrupted Pummerer reaction mediated glycosylation

Herein, we report a novel fluorous-tag assisted two-directional oligosaccharide assembly strategy, which maintained the high coupling efficiency of solution-phase synthesis and featured the advantage of an easy purification process comparable to solid-phase synthesis. A well-designed fluorous tag was decorated on the latent anomeric leaving group in interrupted Pummerer reaction mediated (IPRm) glycosylation. The high efficiency of the in-solution phase glycosylation and the unique affinity of the fluorous tag towards polytetrafluoroethylene (PTFE) particles allowed flexible assembly from the reducing end to the non-reducing end and fast purification by PTFE-assisted filtration. Moreover, the fluorous-tagged latent anomeric leaving group could be activated by oxidation and cleaved by IPRm glycosylation, thus enabling the elongation of the carbohydrate chain from the non-reducing end to the reducing end as well as the recovery of the fluorous tag. The present two-directional synthetic strategy is used to assemble the repeating unit of Streptococcus pneumoniae type 14 capsular polysaccharide.

Recyclable fluorous-tag assisted IPRm glycosylation enabled efficient solution-phase synthesis and rapid fluorous purification, thus promoting sustainable two-directional oligosaccharide assembly.