Hapten design for the generation of catalytic antibodies

This article brings together all of the kinetic data on catalytic antibodies available in the published literature at the time of writing (September, 1993). The data have been presented so that they can be analyzed for any significant trends that arise from relating the structure of the transition-state analog/hapten to the type and efficiency of the catalytic antibody activity elicited.     

Cross-coupling reactions by cooperative Pd/Cu or Ni/Cu catalysis based on the catalytic generation of organocopper nucleophiles

In this review, cross-coupling reactions by cooperative Pd/Cu or Ni/Cu catalysis based on catalytically generated organocopper nucleophiles are summarized. Compared to conventional methods based on the use of stoichiometric amounts of pre-synthesized organometallic reagents, these methods are powerful tools for the alkynylation, arylation, alkenylation, and alkylation of organic electrophiles, especially as they can be carried out in a highly step-economical manner with readily available starting materials based on simple arenes, carboxylic acids, alkenes, and alkynes as pre-nucleophiles.     

Direct catalytic asymmetric Michael reaction of hydroxyketones: asymmetric Zn catalysis with a Et2Zn/linked-BINOL complex

Full details of our direct Michael addition of unmodified ketones using new asymmetric zinc catalysis are described. Et(2)Zn/(S,S)-linked-BINOL complexes were successfully applied to direct 1,4-addition reactions of hydroxyketones. The first generation Et(2)Zn/(S,S)-linked-BINOL 1 = 2/1 system was effective for 1,4-addition of 2-hydroxy-2'-methoxyacetophenone (3). Using 1 mol % of (S,S)-linked-BINOL 1 and 2 mol % of Et(2)Zn, we found that a 1,4-addition reaction of beta-unsubstituted enone proceeded smoothly at 4 degrees C to afford products in high yield (up to 90%) and enantiomeric excess (up to 95%). In the case of beta-substituted enones, however, the first generation Et(2)Zn/(S,S)-linked-BINOL 1 = 2/1 system was not at all effective. The second generation Et(2)Zn/(S,S)-linked-BINOL 1 = 4/1 with MS 3A system was developed and was effective for various beta-substituted enones to afford products in good dr, yield (up to 99%), and high enantiomeric excess (up to 99% ee). With the Et(2)Zn/1 = 4/1 systems, catalyst loading for beta-unsubstituted enone was reduced to as little as 0.01 mol % (substrate/chiral ligand = 10 000). The new system was also effective for 1,4-addition reactions of 2-hydroxy-2'-methoxypropiophenone (9) to afford chiral tert-alcohol in high enantiomeric excess (up to 96% ee). Mechanistic investigations as well as transformations of the Michael adducts into synthetically versatile intermediates are also described.     

Catalytic phosphorus(V)-mediated nucleophilic substitution reactions: development of a catalytic Appel reaction

Catalytic phosphorus(V)-mediated chlorination and bromination reactions of alcohols have been developed. The new reactions constitute a catalytic version of the classical Appel halogenation reaction. In these new reactions oxalyl chloride is used as a consumable stoichiometric reagent to generate the halophosphonium salts responsible for halogenation from catalytic phosphine oxides. Thus, phosphine oxides have been transformed from stoichiometric waste products into catalysts and a new concept for catalytic phosphorus-based activation and nucleophilic substitution of alcohols has been validated. The present study has focused on a full exploration of the scope and limitations of phosphine oxide catalyzed chlorination reactions as well as the development of the analogous bromination reactions. Further mechanistic studies, including density functional theory calculations on proposed intermediates of the catalytic cycle, are consistent with a catalytic cycle involving halo- and alkoxyphosphonium salts as intermediates.     

Direct catalytic asymmetric aldol reaction of hydroxyketones: asymmetric Zn catalysis with a Et(2)Zn/linked-BINOL complex

Full details of our newly developed catalyses with asymmetric zinc complexes as mimics of class II zinc-containing aldolase are described. A Et(2)Zn/(S,S)-linked-BINOL complex was developed and successfully applied to direct catalytic asymmetric aldol reactions of hydroxyketones. A Et(2)Zn/(S,S)-linked-BINOL 1 = 2/1 system was initially developed, which efficiently promoted the direct aldol reaction of 2-hydroxy-2'-methoxyacetophenone (7d). Using 1 mol % of (S,S)-linked-BINOL 1 and 2 mol % of Et(2)Zn, we obtained 1,2-dihydroxyketones syn-selectively in high yield (up to 95%), good diastereomeric ratio (up to 97/3), and excellent enantiomeric excess (up to 99%). Mechanistic investigation of Et(2)Zn/(S,S)-linked-BINOL 1, including X-ray analysis, NMR analysis, cold spray ionization mass spectrometry (CSI-MS) analysis, and kinetic studies, provided new insight into the active oligomeric Zn/(S,S)-linked-BINOL 1/ketone 7d active species. On the basis of mechanistic investigations, a modified second generation Et(2)Zn/(S,S)-linked-BINOL 1 = 4/1 with molecular sieves 3A (MS 3A) system was developed as a much more effective catalyst system for the direct aldol reaction. As little as 0.1 mol % of (S,S)-linked-BINOL 1 and 0.4 mol % of Et(2)Zn promoted the direct aldol reaction smoothly, using only 1.1 equiv of 7d as a donor (substrate/ligand = 1000). This is the most efficient, in terms of catalyst loading, asymmetric catalyst for the direct catalytic asymmetric aldol reaction. Moreover, the Et(2)Zn/(S,S)-linked-BINOL 1 = 4/1 system was effective in the direct catalytic asymmetric aldol reaction of 2-hydroxy-2'-methoxypropiophenone (12), which afforded a chiral tetrasubstituted carbon center (tert-alcohol) in good yield (up to 97%) and ee (up to 97%), albeit in modest syn-selectivity. Newly developed (S,S)-sulfur-linked-BINOL 2 was also effective in the direct aldol reaction of 12. The Et(2)Zn/(S,S)-sulfur-linked-BINOL 2 = 4/1 system gave aldol adducts anti-selectively in good ee (up to 93%). Transformations of the aldol adducts into synthetically versatile intermediates were also described.     

Selective generation of lithiated benzonitriles: the importance of reaction conditions

Lithiated benzonitriles can be generated in high yields from reactions of bromobenzonitriles with n-BuLi in THF under standard cryogenic conditions (ca. -70 degrees C) provided the reverse addition mode is employed. The resultant aryllithiums are fairly stable at temperatures up to -60 degrees C. The formation of lithiated benzonitriles via Br/Li exchange under normal addition mode conditions is plagued by deprotonation and extensive CN-addition reactions. The generation of related aryllithiums from disilylated bromobenzonitriles is comparatively less sensitive to reaction conditions.     

Copper quinolate: A simple and efficient catalytic complex for coupling reactions

We describe an effective and novel method to prepare N-aryl imidazoles via the copper quinolate-catalyzed N-arylation of aryl halides and imidazoles. A wide range of products were obtained in moderate to excellent yields under the optimal reaction conditions. Applying standard conditions, the model reaction could be performed on a gram scale. This method also presents a new avenue to the “click” reaction of terminal alkynes, benzyl bromide, and sodium azide and to the construction of C–C bonds by homocoupling of phenylboronic acid or phenylacetylene derivatives with the aid of copper quinolate.     

Modeling the catalysis of anti-cocaine catalytic antibody: competing reaction pathways and free energy barriers

The competing reaction pathways and the corresponding free energy barriers for cocaine hydrolysis catalyzed by an anti-cocaine catalytic antibody, mAb15A10, were studied by using a novel computational strategy based on the binding free energy calculations on the antibody binding with cocaine and transition states. The calculated binding free energies were used to evaluate the free energy barrier shift from the cocaine hydrolysis in water to the antibody-catalyzed cocaine hydrolysis for each reaction pathway. The free energy barriers for the antibody-catalyzed cocaine hydrolysis were predicted to be the corresponding free energy barriers for the cocaine hydrolysis in water plus the calculated free energy barrier shifts. The calculated free energy barrier shift of -6.87 kcal/mol from the dominant reaction pathway of the cocaine benzoyl ester hydrolysis in water to the dominant reaction pathway of the antibody-catalyzed cocaine hydrolysis is in good agreement with the experimentally derived free energy barrier shift of -5.93 kcal/mol. The calculated mutation-caused shifts of the free energy barrier are also reasonably close to the available experimental activity data. The good agreement suggests that the protocol for calculating the free energy barrier shift from the cocaine hydrolysis in water to the antibody-catalyzed cocaine hydrolysis may be used in future rational design of possible high-activity mutants of the antibody as anti-cocaine therapeutics. The general strategy of the free energy barrier shift calculation may also be valuable in studying a variety of chemical reactions catalyzed by other antibodies or proteins through noncovalent bonding interactions with the substrates.     

Catalytic self-assembled monolayers on Au nanoparticles: the source of catalysis of a transphosphorylation reaction

The catalytic activity of a series of Au monolayer protected colloids (Au MPCs) containing different ratios of the catalytic unit triazacyclononane?Zn^II (TACN?Zn^II) and an inert triethyleneglycol (TEG) unit was measured. The catalytic self‐assembled monolayers (SAMs) are highly efficient in the transphosphorylation of 2‐hydroxy propyl 4‐nitrophenyl phosphate (HPNPP), an RNA model substrate, exhibiting maximum values for the Michaelis–Menten parameters k_cat and K_M of 6.7×10^?3 s^?1 and 3.1×10^?4 M , respectively, normalized per catalytic unit. Despite the structural simplicity of the catalytic units, this renders these nanoparticles among the most active catalysts known for this substrate. Both k_cat and K_M parameters were determined as a function of the mole fraction of catalytic unit (x ₁ ) in the SAM. Within this nanoparticle (NP) series, k_cat increases up till x ₁ ≈0.4, after which it remains constant and K_M decreases exponentially over the range studied. A theoretical analysis demonstrated that these trends are an intrinsic property of catalytic SAMs, in which catalysis originates from the cooperative effect between two neighboring catalytic units. The multivalency of the system causes an increase of the number of potential dimeric catalytic sites composed of two catalytic units as a function of the x ₁ , which causes an apparent increase in binding affinity (decrease in K_M). Simultaneously, the k_cat value is determined by the number of substrate molecules bound at saturation. For values of x ₁ > 0.4, isolated catalytic units are no longer present and all catalytic units are involved in catalysis at saturation. Importantly, the observed trends are indicative of a random distribution of the thiols in the SAM. As indicated by the theoretical analysis, and confirmed by a control experiment, in case of clustering both k_cat and K_M values remain constant over the entire range of x ₁ .     

Unveiling the importance of reactant mass transfer in environmental catalysis: Taking catalytic chlorobenzene oxidation as an example

To date, investigations onto the regulation of reactants mass transfer has been paid much less attention in environmental catalysis. Herein, we demonstrated that by rationally designing the adsorption sites of multi-reactants, the pollutant destruction efficiency, product selectivity, reaction stability and secondary pollution have been all affected in the catalytic chlorobenzene oxidation (CBCO). Experimental results revealed that the co-adsorption of chlorobenzene (CB) and gaseous O₂ at the oxygen vacancies of CeO₂ led to remarkably high CO₂ generation, owning to their short mass transfer distance on the catalyst surface, while their separated adsorptions at Brönsted HZSM-5 and CeO₂ vacancies resulted in a much lower CO₂ generation, and produced significant polychlorinated byproducts in the off-gas. However, this separated adsorption model yielded superior long-term stability for the CeO₂/HZSM-5 catalyst, owning to the protection of CeO₂ oxygen vacancies from Cl poisoning by the preferential adsorption of CB on the Brönsted acidic sites. This work unveils that design of environmental catalysts needs to consider both of the catalyst intrinsic property and reactant mass transfer; investigations of the latter could pave a new way for the development of highly efficient catalysts towards environmental pollution control.     

曲克芦丁钯配合物的制备及其对Heck反应的催化性能

制备了曲克芦丁钯配合物,利用红外光谱和紫外光谱表征了配合物的结构;同时考察了其对溴苯和丙烯酸的Heck芳基化反应的催化性能.结果表明:在反应物的物质的量之比(溴苯与丙烯酸)为1:2、反应温度120℃、反应时间8 h、三正丁胺为碱、四丁基溴化铵为溶剂的条件下,曲克芦丁钯配合物对溴苯和丙烯酸的Heck芳基化反应有较好的催化...     

The importance of molecular complexity in the design of screening libraries

The one-dimensional model of Hann et al. (J Chem Inf Comput Sci 41(3):856–864) has been extended to include reverse binding and wrap-around interaction modes between the protein and ligand to explore the complete combinatorial matrix of molecular recognition. The cumulative distribution function of the Maxwell–Boltzmann distribution has been used to calculate the probability of measuring the sensitivity of the interactions as the asymptotic limits of the distribution better describe the behavior of the interactions under experimental conditions. Based on our model, we hypothesized that molecules of lower complexity are preferred for target based screening campaigns, while augmenting such a library with moieties of moderate complexities maybe better suited for phenotypic screens. The validity of the hypothesis has been assessed via the analysis of the hit rate profiles for four ChemBL datasets for enzymatic and phenotypic screens.     

Immunologically driven antibodies chemical engineering: design and synthesis of a hapten aimed at nerve agent hydrolysis

In this letter, we describe the design and the synthesis of an organophosphorus hapten aimed at a mixed biotechnological-chemical strategy for the mild decontamination of exceedingly toxic nerve agent VX. Hapten will be used to raise and select monoclonal antibodies (mAbs) able to bind both the nerve agent, and an oxime, derived from pyridinaldoxime, able to specifically hydrolyze its P-S bond. In order to significantly increase the hydrolysis reaction rate, the controlled respective positioning of the oxime and of the substrate will be achieved through the immunization, and in a second step, the oxime will be bound to the mAb in a reactive position towards the reactive thiophosphate functionality of the substrate.     

Square-planar dichloro palladium complexes with trans-configurated phosphine ligands avoiding ortho-metallation: Ligand design, complex synthesis, molecular structure and catalytic potential for Suzuki cross-coupling reactions

The square-planar palladium complexes trans-[PdCl₂(PPh₂-CH₂-2,4,6-C₆H₂Me₃)₂] (1) and trans-[PdCl₂(η²-PPh₂-CH₂-2,4,6-C₆HMe₃-CH₂-2,4,6-C₆HMe₃-CH₂-PPh₂)] (2) have been synthesized from [PdCl₂(cod)] (cod = 1,5-cyclooctadiene) and the corresponding new phosphine or diphosphine ligands. The single-crystal X-ray structure analysis reveals for both complexes a trans arrangement of the two chlorine and of the two phosphorus atoms. In both cases, ortho-metallation leading to palladacycles is not possible, since all ortho positions in the benzylic rings of 1 and 2 are blocked by methyl substituents. Both complexes are found to catalyze Suzuki cross-coupling reactions of deactivated and even bulky arene substrates.     

Water catalysis and anticatalysis in photochemical reactions: observation of a delayed threshold effect in the reaction quantum yield

The possible catalysis of photochemical reactions by water molecules is considered. Using theoretical simulations, we investigate the HF-elimination reaction of fluoromethanol in small water clusters initiated by the overtone excitation of the hydroxyl group. The reaction occurs in competition with the process of water evaporation that dissipates the excitation and quenches the reaction. Although the transition state barrier is stabilized by over 20 kcal/mol through hydrogen bonding with water, the quantum yield versus energy shows a pronounced delayed threshold that effectively eliminates the catalytic effect. It is concluded that the quantum chemistry calculations of barrier lowering are not sufficient to infer water catalysis in some photochemical reactions, which instead require dynamical modeling.     

Crossed beam studies of elementary reactions of N and C atoms and CN radicals of importance in combustion

The dynamics of some elementary reactions of N(2D), C(3P,1D) and CN(X2 sigma +) of importance in combustion have been investigated by using the crossed molecular beam scattering method with mass spectrometric detection. The novel capability of producing intense, continuous beams of the radical reagents by a radio-frequency discharge beam source was exploited. From angular and velocity distribution measurements obtained in the laboratory frame, primary reaction products have been identified and their angular and translational energy distributions in the center-of-mass system, as well as branching ratios, have been derived. The dominant N/H exchange channel has been examined in the reaction N(2D) + CH4, which is found to lead to H + CH2NH (methylenimine) and H + CH3N (methylnitrene); no H2 elimination is observed. In the reaction N(2D) + H2O the N/H exchange channel has been found to occur via two competing pathways leading to HNO + H and HON + H, while formation of NO + H2 is negligible. Formation of H + H2CCCH (propargyl) is the dominant pathway, at low collision energy (Ec), of the C(3P) + C2H4 reaction, while at high Ec formation of the less stable C3H3 isomers (cyclopropenyl and/or propyn-1-yl) also occurs; the H2 elimination channel is negligible. The H elimination channel has also been found to be the dominant pathway in the C(3P,1D) + CH3CCH reaction leading to C4H3 isomers and, again, no H2 elimination has been observed to occur. In contrast, both H and H2 elimination, leading in comparable ratio to C3H + H and C3(X1 sigma g+) + H2(X1 sigma g+), respectively, have been observed in the reaction C(3P) + C2H2(X1 sigma g+). The occurrence of the spin-forbidden molecular pathway in this reaction, never detected before, has been rationalized by invoking the occurrence of intersystem crossing between triplet and singlet manifolds of the C3H2 potential energy surfaces. The reaction CN(X2 sigma +) + C2H2 has been found to lead to internally excited HCCCN (cyanoacetylene) + H. For all the reactions the dynamics have been discussed in the light of recent theoretical calculations on the relevant potential energy surfaces. Previous, lower resolution studies on C and CN reactions carried out using pulsed beams are noted. Finally, throughout the paper the relevance of these results to combustion chemistry is considered.     

Iron-copper cooperative catalysis in the reactions of alkyl Grignard reagents: exchange reaction with alkenes and carbometalation of alkynes

Iron-copper cooperative catalysis is shown to be effective for an alkene-Grignard exchange reaction and alkylmagnesiation of alkynes. The Grignard exchange between terminal alkenes (RCH═CH(2)) and cyclopentylmagnesium bromide was catalyzed by FeCl(3) (2.5 mol %) and CuBr (5 mol %) in combination with PBu(3) (10 mol %) to give RCH(2)CH(2)MgBr in high yields. 1-Alkyl Grignard reagents add to alkynes in the presence of a catalyst system consisting of Fe(acac)(3), CuBr, PBu(3), and N,N,N',N'-tetramethylethylenediamine to give β-alkylvinyl Grignard reagents. The exchange reaction and carbometalation take place on iron, whereas copper assists with the exchange of organic groups between organoiron and organomagnesium species through transmetalation with these species. Sequential reactions consisting of the alkene-Grignard exchange and the alkylmagnesiation of alkynes were successfully conducted by adding an alkyne to a mixture of the first reaction. Isomerization of Grignard reagents from 2-alkyl to 1-alkyl catalyzed by Fe-Cu also is applicable as the first 1-alkyl Grignard formation step.