Synthesis,complexing properties and molecular modelling of open chain receptors of barbiturates derived from 2,6-diamino pyridine

Three new derivatives of 2,6-diacyldiaminopyridine are reported. NMR shift titrations were performed in CDCl₃ with barbiturates. The diamide1 affords a greater complexation energy (–13.00 kJ mol^–1) with bemegride than the dithioamide2 (–9.15 kJ mol^–1). This result, unexpected on the basis of the proton acidities, is explained by the great torsion energy induced in2 by the bulky sulfur atom. Compounds3 and4 present unusual four and five H-bond features with barbital and relatively weak complexation energies (–9.53 and –16.34 kJ mol^–1, respectively). Molecular mechanics indicates that ligand4 displays a helical secondary structure which is disrupted by complexation. Calculations of the H-bond energies (E _calc.) of the intermolecular assemblies with barbital or phenobarbital and other host-guest complexes given in the literature give a good correlation (r=0.98) with experimental values: E _calc.=1.07 G _a–42.0. Limitations of this relation are discussed.     

Xα–DV Modeling of Photoionization and Electronic Absorption Spectra of Cobalt tris–Acetylacetonate

Ionization energies, excited state energies, and oscillator strengths of electron–dipole transitions are calculated within the framework of the SCF–X–DV quantum–chemical model of the Co(HCOCHHCO)₃ model complex in order to interpret the photoionization and electronic absorption spectra of cobalt tris––diketonate. It is shown that the sequences of ionization and excitation energies calculated in the transition state approximation do not significantly differ from the sequence of energies estimated in the frozen MO approximation. The model absorption spectrum with a correction of 1.9 eV applied to the energy of the vacant ₄ ^* orbital is in good agreement with our gas–phase absorption spectrum of Co(acac)₃.     

Study of intermolecular interactions and complex formation of aminofurazans by IR spectroscopy

The IR spectra of 3-amino-4-nitrofurazan (1) and 4-amino-4-nitroazoxyfurazan (2) in the crystalline state and in solutions in CH{in2}Cl{in2}, CCl{in4}, and MeCN have been studied. It was shown that both compounds exist in the solid state as self-associates, which are destroyed on dissolution in an organic solvent. Compouns1 and2 form associate complexes with MeCN, the energies of formation of which are –5 and –3 kcal mol{su–1}, respectively.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2242–2246, December, 1994.     

Beiträge zur Chemie der Pyrrolpigmente, 42. Mitt. Kraftfeldrechnungen an Gallenfarbstoffen: Die Energiehyperfläche rubinoider Pigmente

The energy hypersurface of rubinoid bile pigments is calculated using a force field model previously described. Two cases are observed. I: The pigment is substituted symmetrically or unsymmetrically by apolar groups. This results in a very shallow energy valley containing several enantiomeric conformers of approximately equal energies. II: Substitution by polar groups, especially in position 8 and 12 of the rubin skeleton, (e.g.–CH₂–CH₂–COOH) is followed by a lock in bonding between such groups and the lactam ring functions. Thereby only two enantiomeric conformers, which are energetically stabilized, are possible. The barrier between these species amounts to about 40 kJ/mol. These results are compared with the experimental facts available so far. An analysis of the corresponding energy hypersurfaces of the diastereomeric forms of (Z,Z)-, (E,Z)-, (Z,E)- and (E,E)-configurations is given as well.

41. Mitt.:Falk H., Müller N., Mh. Chem.112, 791 (1981).     

Thermochemical study of some cubane derivatives

The thermochemical study of cubane-1,4-dicarboxylic acid (1), diethyl cubane-1,4-dicarboxylate (2), diisopropyl cubane-1,4-dicarboxylate (3), and bis(2-fluoro-2,2-dinitro)ethyl cubane-1,4-dicarboxylate (4) was performed. The standard enthalpies of combustion (_c H°) and formation (_f H°) of these compounds were estimated using the method of combustion in a calorimetric bomb in an oxygen atmosphere. Using the additive group method, calculated values for _f H° of these substances which agreed satisfactorily with the experimental ones were obtained. The strain energies (E _s) of the cubic structure of derivatives1–4 were calculated. It was concluded thatE _s did not change on substitution of hydrogen atoms in cubane for various functional groups and was equal toE _s of the structure of cubane itself. The reliability of the single published value of _f H° in the cubane crystal state, 541.8 kJ mol^–1 (129.5 kcal mol^–1), was confirmed.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2471–2473, October, 1996.     

Solvent effects on the initial and transition states upon solvolysis oftrans-dichlorotetra(4-ethylpyridine)cobalt(III) perchlorate in water+methanol mixtures

Summary The solvolysis of trans-[Co(4-Etpy)₄Cl₂]⁺ (1) (Etpy=ethylpyridine) was investigated in water and in a wide range of water+methanol mixtures. The effect of temperature on the solvolysis was considered and the thermodynamic parameters of activation were calculated. The free energies of transfer of (1) in the initial state were calculated from the solubility of the complex [Co(4-Etpy)₄Cl₂]₂[ReCl₆]. The free energy of transfer of the cation (1) in the transition state was calculated using a free energy cycle. The effect of the solvent structure on (1) is dominant in the transition state, where –G _t ^o (1) transition >–G _t ^o (1) initial. Comparison of the present thermodynamic data with those obtained previously fortrans-[Co(4-Mepy)₄Cl₂]⁺, (2), andtrans-[Co(py₄Cl₂]⁺, (3) in the same solvent mixture, shows that the stability increases in the order: (1), (2)<(3) at low mole fraction of the co-solvent, contrary to expectation, while at high mole fraction the order of increasing stability is: (1)<(3)<(2). The results were interpreted on non-electrostatic grounds.     

Calculation of low-lying electronic states of the MgN molecule in the effective-core-potential approximation

Plots of the potential energy and the dipole moment of four low-lying electronic states of the MgN molecule have been calculated by the self-consistent-field and configuration-interaction methods in the effective-core-potential approximation. The ground state of the molecule is not bound and has^4– symmetry. The lowest bound states,² and^2–, are practically degenerate; the values of the equilibrium internuclear distances (1.91 and 1.98 Å) and the vibrational constants (637 and 519 cm^–1, respectively) have been found for them. The vertical energy of the transition from these states to the ground state amounts to about 0.5 eV.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 21, No. 2, pp. 217–220, March–April, 1985.     

An Ab Initio Molecular Orbital Theory and Density Functional Theory (DFT) Study of Conformers and Rotamers of 4-Substituted (Methyl, Hydroxymethyl, Methanoyl, Ethanoyl, Cyano, Fluoro, Chloro, Bromo, Acetoxy) Tetrahydro-2H-thiopyran-1,1-dioxides

The structures and energies of axial and equatorial conformers and rotamers of 4-substituted tetrahydro-2H-thiopyran-1,1-dioxides (tetrahydrothiopyran-1,1-dioxides, thiacyclohexane-1,1-dioxides, thiane-1,1-dioxides, and 1,1-dioxothianes; CH₃, CH₂OH, CHO, COCH₃, CN, F, Cl, Br, and OCOCH₃) were calculated using the hybrid density functionals B3LYP, B3P86, and B3PW91, as well as MP2 and the 6-31G(d), 6-31G(2d), 6-31G(3d), 6-31G(d,p), and 6-31+G(d) basis sets. MP2/6-31+G(d)/ /HF/6-31+G(d) [–G° = 1.73 kcal/mol], B3P86/6-31G(d) [–G° = 1.75 kcal/mol], and B3PW91/6-31G(d) [–G° = 1.85 kcal/mol] gave conformational free energy (G°) values at 180 K for 4-methyltetrahydro-2H-thiopyran-1,1-dioxide which were similar to the reported experimental values for methylcyclohexane (–G° = 1.80 kcal/mol), 4-methyltetrahydro-2H-thiopyran (–G° = 1.80 kcal/mol), and other 4-methyl-substituted heterocycles. All levels of theory showed that the conformational preferences of the 4-methanoyl (4-formyl), 4-ethanoyl (4-acetyl), and 4-cyano substituents were small. The HF calculations gave conformational free energy (G°) values for 4-chlorotetrahydro-2H-thiopyran-1,1dioxide which were closer to the experimental value than the MP2 and density functional methods. The best agreement with available experimental data for 4-bromotetrahydro-2H-thiopyran-1,1-dioxide was obtained from the HF/6-31G(2d), HF/6-31G(3d), and B3LYP/6-31G(2d) calculations, and, for 4-acetoxytetrahydro-2H-thiopyran-1,1-dioxide, from the HF/6–31G(3d) calculations. The conformational free energies (G°) and relative energies (E) of the conformers and rotamers have been compared with the correspondingly substituted cyclohexanes and tetrahydro-2H-thiopyrans and are discussed in terms of dipole–dipole (electrostatic) interactions and repulsive nonbonded interactions (steric) in the most stable axial and equatorial conformers. The axial S=O bond lengths are shorter than the equatorial S=O bond lengths and the C2–C3 bond lengths in the substituents with carbon-bonded to the ring are shorter than the C3–C4 and C4–C-5 bond lengths. In contrast, the C2–C3 bond lengths in the 4-halogen and 4-acetoxy substituents are longer than the C3–C4 and C4–C-5 bond lengths.     

Multidimensional tunneling dynamics of proton transfer in malonaldehyde molecule and its isotopomers

The twenty-one-dimensional Hamiltonian of malonaldehyde molecule and a number of its isotopomers (H/D, ¹³C/¹²C) was reconstructed in the low-energy region (<3000 cm^–1). Parameters of the Hamiltonian were obtained from quantum-chemical calculations of the energies, equilibrium geometries, and eigenvectors and eigenfrequencies of normal vibrations at the stationary points corresponding to the ground state and transition state. Despite substantial variation of the barrier height calculated using different quantum-chemical methods (from 2.8 to 10.3 kcal mol^–1), the corresponding potential energy surfaces can be matched with high accuracy by scaling only one parameter (the semiclassical parameter , which defines the scales of potential, energy, and action). Scaling invariance allows optimization of the Hamiltonian in such a way that the calculated ground-state tunneling splitting coincides with the experimental value. The corresponding potential barrier height is estimated at 4.34±0.4 kcal mol^–1. The quantum dynamics problem was solved using the perturbative instanton approach without reducing the number of degrees of freedom. The role of all transverse vibrations in proton tunneling is characterized. Vibration-tunneling spectrum is calculated for the ground state and low-lying excited states and mode-specific isotope effects are predicted.     

Temperature Dependence of Ligand Exchange in the Coordination Sphere of Tb(ClO4)3 · nH2O in the Presence of Adamantylideneadamantane-1,2-dioxetane and Benzophenone in Acetonitrile Solutions

The processes of complexation and solvation in the Tb(ClO₄)₃ · nH₂O –adamantylideneadamantane-1,2-dioxetane (I)–benzophenone (II) system in acetonitrile solutions were studied at 280–320 K. The complexation of Tb(ClO₄)₃ · nH₂O in ground and electronically excited states with I and II was found out. An anomalous increase in the lifetime of Tb(ClO₄)^* ₃ · nH₂O with temperature was observed; this anomalous increase is indicative of a structural change in the environment of the terbium ion in solution. It was found that of Tb(III)* increased because of rearrangement of the inner sphere of solvation aqua complexes toward the replacement of H₂O molecules by solvent molecules that exhibit a lower quenching ability.     

State to state rotational integral cross sections and rate coefficients of HCP collision with He at low temperature

We report coupled-cluster [CCSD(T)] ab initio calculations of the two-dimensional interaction potential energy surface of the HCP–He complex. The aug-cc-pVTZ and aug-cc-pVQZ gaussian basis sets are used. HCP is held fixed at its linear equilibrium ground vibrational level with the corresponding [H–C] and [C–P] bond lengths set to the values 2.016 bohrs and 2.914 bohrs, respectively. Our calculations are corrected for basis set superposition errors (BSSE). The PES obtained with the above triple zeta basis set has two minima located 22.018 cm⁻¹ and 14.808 cm⁻¹ below the HCP+He dissociation limit. These well depths are shifted to 23.505 cm⁻¹ and 15.949 cm⁻¹, respectively, when the quadruple zeta basis set is used. Our PESs are fitted on a basis of Legendre polynomial functions and state to state rotational integral cross sections of the HCP collision with He are calculated in the close-coupling (CC) approximation. Downward rate coefficients are inferred at low temperature () by averaging the cross sections over a Maxwell–Boltzmann velocity distribution. An analysis of our results shows that for kinetic energies greater than 60 cm⁻¹, the 0→2 transition dominates. The numbers derived here may be very useful for astrophysical observations.     

Polyparametric modification equation for estimating thermodynamic properties of energetic nitro compounds

Calculation methods, based on hybrid density-functional theory with the basis sets of B3LYP/ 6-311+G (2d, p)//B3LYP/6-31G(d, p)and B3LYP/6-31+G(d)//B3LYP/6-31G(d, p), were applied to determine the thermodynamic characteristics of various energetic nitro compounds. A parametric modification equation and the least-squares approach were used to identify 21 of the energetic research compounds. The atomization energies of these 21 compounds have an average relative error of 0.21–0.25% of the experimental values. The enthalpy (H _f) and the Gibbs energy (G _f) of formation have mean absolute errors of 10.8–11.4 kJ/ mol (2.6–2.7 kcal/mol) and 10.0–10.3 kJ/mol (2.4 kcal/ mol), respectively. The enthalpy and the Gibbs energy of formation obtained exceed those in the literature obtained by semiempirical calculations. The calibrated least-squares parameters and parametric equations were used to predict H _f and G _f for the five newly developed energetic nitro compounds for further applications.Acknowledgements. The authors would like to thank the National Science Council of the Republic of China for financial support of this work under grant no. NSC-91-2113-M-014-003. The National Center for High-Performance Computing providing the computation facility is also acknowledged.     

A Computational Study of Chair–Twist Energy Differences and the Chair–Chair Conformational Interconversion in Tetrahydro-2H-thiopyran (Thiacyclohexane,Thiane)

Ab initio molecular orbital theory with the LANL2DZ, 3-21G, 6-31G(d), 6-31+G(d), 6-31+G(d,p), 6-311+G(d,p),6-31G(2d), 6-31G(3d), and 6-311G(d,p) basis sets and density functional theory (B3P86, B3LYP, B3PW91) have been used to calculate the structures, relative energies, enthalpies, entropies, and free energies of the chair, 1,4-twist, and 2,5-twist conformers of tetrahydro-2H-thiopyran (tetrahydrothiopyran, thiacyclohexane, thiane, pentamethylene sulfide). All levels of theory calculated similar energy values and the effect of basis sets on the calculated energies was small. The chair conformer of tetrahydro-2H-thiopyran was 5.27 kcal/mol more stable than the 1,4-twist conformer, which was slightly more stable (0.81 kcal/mol) than the 2,5-twist conformer. The chair–1,4-twist and chair–2,5-twist free energy differences ( G°_{c – t}) were 5.44 and 5.71 kcal/mol, respectively. Intrinsic reaction coordinate [IRC, minimum-energy path (MEP)] calculations connected the transition state between the chair and the 2,5-twist conformers. This transition state is 9.73 kcal/mol higher in energy than the chair conformer and the energy differences between the chair and the 1,4-boat and 2,5-boat transition states were 8.07 and 6.38 kcal/mol, respectively. Stereoelectronic hyperconjugative interactions were observed in the chair, 1,4-twist, and 2,5-twist conformers of tetrahydro-2H-thiopyran. The stereoelectronic hyperconjugative effects in the chair conformer of tetrahydro-2H-thiopyran have been compared to those in the respective chair conformers of tetrahydro-2H-pyran, tetrahydro-2H-selenane, and tetrahydro-2H-tellurane.     

Darstellung,chiroptische eigenschaften und absolute Konfiguration von 4,14-disubstituierten [2.2]Metacyclophanen

Resolution of [2.2]metacyclophane-4,14-dicarboxylic acid (2) was achieved by crystallization of its (+)- and (–)--phenylethylamine salts. Chemical correlation with (–)-(S)_p-[2.2]metacyclophane-4-caboxylic acid (–)-11 via its monobromo derivative (–)-8 established the absolute configuration of the dicarboxylic acid as (–)-(S)_p-2. The key compound (–)-8 was prepared by partial lithiation and subsequent carboxylation of 4,14-dibromo[2.2]metacyclophane (1) and resolution with (–)-phenylethylamine.Recently proposed rules correlating the absolute configurations of planarchiral compounds with theirCD-spectra are discussed and a comparison of the chiroptical properties of 4,14-di- and 4-mono-substituted [2.2]metacyclophanes is presented.

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6. Mitt.:C. Glotzmann, E. Langer, H. Lehner undK. Schlögl, Mh. Chem.106, 763 (1975).     

Static and dynamic stereochemistry of 1,1′-bi(9,10-dihydro-9,10-ethano-anthryl)

Summary The title compound2 was prepared either by highpressure reaction of 1,1-bianthryl with ethylene or by coupling of 1-bromo-9,10-dihydro-9,10-ethanoanthracene (4). Both syntheses afforded a mixture of diastereoisomers (meso2a and racemate2b) in a ratio of 1.5:1 and 2.3:1, respectively. Configurational assignment was possible both from the¹H- and¹³C-NMR spectra and by coupling of laevorotatory4 (accessibly by enantioselective chromatography on triacetyl cellulose in ethanol) to laevorotatory2b. (+)-4 was tranformed into the dextrorotatory carboxylic acid (+)-5 of known configuration (9R) thus establishing the configuration of (+)-4 as (9R) too and hence the centrochirality in (–)-2b as (9S)(9S). The racemic form2b is a conformational (appr. 1.8:1) mixture of two rotamers.The rotational barrier was established as G ^#=92–95 kJ mol^–1 (depending on the temperature) both by¹H-NMR and CD kinetics (based on equilibration of the separated optically active rotamers ofracem.2). For the latter preferred conformations were assumed allowing the assignment of the axial chirality: e.g. (–)-(9S)(R)_a(9S) for the main rotamer of (–)-2 b [and (–)(9S)(S)_a(9S) for the underpopulated one].All assumptions were confirmed by X-ray crystal structure analyses of2 a and the main rotamer of2b with torsional angles around the 1,1-bonds of –111.1 and –121.2°, respectively.Dedicated to Prof. K. L. Komarek (Vienna) with cordial wishes on the occasion of the 65th anniversary of his birthday     

Tuning of hydrogen bond strength using substituents on phenol and aniline: A possible ligand design strategy

Using Density Functional Theory, the hydrogen bonding energy is calculated for the interaction of phenol and aniline with four model compounds representing the protein backbone and various amino acid site chain residues. The models are methanol, protonated methylamine, formaldehyde and acetate anion. The H-bond energies for the uncharged species are 2.5kcalmol^–1, whereas the charged model compounds bind with much higher energies of 20kcalmol^–1. The effect of para-substitution on the hydrogen bond energies is determined. Substitution has little effect on the H-bond energy of the neutral complexes (<2kcalmol^–1), but for the positively and negatively charged systems substitution drastically alters the binding energies, e.g., 14.3kcalmol^–1 for para-NO₂. In the context of protein–ligand binding, relatively small changes in binding energy can cause large changes in affinity due to their exponential relationship. This means that for –NO₂ an enormous change of 10 orders of magnitude for the affinity constant is predicted. These calculations allow prediction of H-bonds, using different substituents, in order to fine-tune and optimize ligand–protein interactions in the search for drug candidates.     

Transition State Geometry and a Polar Effect in the Reactions of Peroxy Radicals with Oxygen-Containing Compounds

The reactions of structurally different peroxy radicals with the C–H bonds of oxygen-containing compounds (ketones, aldehydes, ethers, and esters) were analyzed in terms of a parabolic model. The enthalpies of these reactions and the activation energies of equienthalpic reactions of peroxy radicals with hydrocarbons were calculated, and the contribution of the polar interaction E to the activation energy was evaluated. The geometry parameters of the transition state were calculated with the use of an algorithm developed based on quantum-chemical calculations in combination with the intersecting parabolas method. It was found that the polar interaction resulted in a change in the configuration of the C···H···O reaction center in the transition state from linear to angular. A different angle (C···H···O) from 180° appeared in this case. The following linear correlation between E (kJ/mol) and cos (180° – ) was obeyed: cos (180° – ) = 1 + 6.76 × 10^–3E .     

Protonation of ferrocene,ruthenocene, and osmocene: a density functional study

Protonated forms of the ferrocene, ruthenocene, and osmocene molecules in the gas phase were calculated using the density functional approach with the Becke—Lee—Young—Parr functional. The proton affinity energies of ferrocene, ruthenocene, and osmocene were estimated at 214.2, 220.3, and 229.7 kcal mol^–1, respectively. The addition of a proton to carbon atoms of the cyclopentadienyl ring in the ferrocene molecule and to the metal atom in the ruthenocene and osmocene molecules is more energetically favorable. No minimum corresponding to ring protonation was located on the potential energy surface of protonated osmocene. The C—H _endo bond in the ring-protonated [C₁₀H₁₁M]⁺ (M = Fe, Ru) cations is involved in agostic interaction with the metal atom. Transition states of interconversions between the ring-protonated and metal-protonated forms were identified. A specific group of protonated forms of the ferrocene and ruthenocene molecules includes four types of structures, viz., ring-protonated (1a,b) and metal-protonated (2a,b) structures, transition states of the 1 2 interconversion (3a,b), as well as ring-protonated structures with the cyclopentadiene ring folded along the C(2)—C(5) line so that the M—H _endo interaction is virtually negligible. The latter structures are required for [1,5]-sigmatropic shift of the exo-hydrogen atom in the Cp ring to occur. The results obtained were used for the interpretation of the available schemes of electrophilic substitution reactions in metallocenes and of the sigmatropic shift mechanisms.     

Synthesis,Crystal and Molecular Structures of [Co(MH)2(Thio)2][BF4] · H2O and [Co(DH)2(NH3)2][BF4]

Crystal structures of [Co(MH)₂(Thio)₂][BF₄] · H₂O (I) and [Co(DH)₂(NH₃)₂][BF₄] (II), where MH^– is H₃C–C(NOH)–C(NO^–)–H and DH^– is H₃C–C(NOH)–C(NO^–)–CH₃, were determined by X-ray diffraction. The crystals are monoclinic, space group C2/c, unit cell parameters (for I and II, respectively): a = 22.018(2) Å, b = 7.943(1) Å, c = 11.681(1) Å, = 92.68(1)° and a = 21.436(2) Å, b = 6.400(2) Å, c = 12.389(2) Å, = 113.13(1)°. In both cases, the Co(III) coordination polyhedron is a centrosymmetrical trans-octahedron, N₄S₂ for I and N₆ for II. In the crystals of I and II, the complex cations and the outer-sphere [BF₄]^– anions (and the crystal water molecules in I) form elaborate hydrogen bonding system.     

Reactions of mono- and bimolecular hydrogen transfer in alkyl radicals: analysis using the parabolic model and density functional calculations

Experimental data on monomolecular hydrogen transfer in the reactions of the type RC^·H(CH₂)_nCH₂R¹ RCH₂(CH₂)_nC^·HR¹ (n = 2—4, R and R¹ are alkyl substituents) were analyzed using the parabolic model (PM). The parameters characterizing this class of reactions were calculated. Isomerization of alkyl radicals via cyclic transition states (TS) is characterized by the following energy barriers to thermoneutral reaction E _e0: 53.5, 65.4, and 63.2 kJ mol^–1 for the six-, five-, and seven-membered TS, respectively. The E _e0 energy and the strain energy change in parallel in the series of cycloparaffins C_nH_2n. Density functional calculations of intramolecular hydrogen transfer in the n-butyl and n-pentyl radicals and of the bimolecular hydrogen abstraction from the ethane molecule by the ethyl radical were performed. The activation energies of the intra- and intermolecular hydrogen transfer were compared. The parameters of the PM were compared with the interatomic distances in the reaction center of the TS calculated by the density functional method.