Improved spectral quality for 3D MR spectroscopic imaging using a high spatial resolution acquisition strategy

Spectral quality in (1)H MR spectroscopic imaging (MRSI) of the brain is often significantly degraded in regions subject to local magnetic susceptibility variations, which results in broadened and distorted spectral lineshapes. In this report, a modified acquisition strategy for volumetric echo-planar spectroscopic imaging (3D EPSI) is presented that extends the region of the brain that can be observed. The data are sampled at higher spatial resolution, then corrected for local B(0) shifts and reconstructed such that the final spatial resolution matches that of 3D EPSI data acquired with the conventional lower spatial resolution. Comparison of in vivo data obtained at 1.5 T with these two acquisition schemes shows that the high spatial resolution acquisition provides considerable reduction of spectral linewidths in many problematic brain regions, though with a reduction in signal-to-noise ratio by a factor of approximately 1.4 to 1.6 for the matrix sizes used in this study. However, the effect of the increased noise was largely offset by the improved spectral quality, leading to an overall improvement of the metabolite image quality obtained using automated spectral analysis.     

Phased array 3D MR spectroscopic imaging of the brain at 7 T

Ultra-high-field 7 T magnetic resonance (MR) scanners offer the potential for greatly improved MR spectroscopic imaging due to increased sensitivity and spectral resolution. Prior 7 T human single-voxel MR Spectroscopy (MRS) studies have shown significant increases in signal-to-noise ratio (SNR) and spectral resolution as compared to lower magnetic fields but have not demonstrated the increase in spatial resolution and multivoxel coverage possible with 7 T MR spectroscopic imaging. The goal of this study was to develop specialized radiofrequency (RF) pulses and sequences for three-dimensional (3D) MR spectroscopic imaging (MRSI) at 7 T to address the challenges of increased chemical shift misregistration, B1 power limitations, and increased spectral bandwidth. The new 7 T MRSI sequence was tested in volunteer studies and demonstrated the feasibility of obtaining high-SNR phased-array 3D MRSI from the human brain.     

In vivo 31P echo-planar spectroscopic imaging of human calf muscle

Localized phosphorus-31 NMR spectra of human calf muscle in vivo were obtained by means of echo-planar spectroscopic imaging (EPSI) with a 1.5-T whole-body scanner. The technique permits the measurement of two-dimensional 31P SI data at a minimum acquisition time of 2.4 s (8x8 voxels, TR=300 ms). With 9.4 min measurement time (TR=1100 ms, 64 averages) and 25x25x40 mm spatial resolution in vivo the 31P NMR signal-to-noise ratio (S/N) of the phosphocreatine (PCr) resonance was about 45; the multiplets of nucleoside 5'-triphosphates were resolved. Spectral quality permits quantitative assessment of the PCr signal in a measurement time that is shorter by a factor of 2 or more than the minimum measurement time feasible with chemical-shift imaging. In a functional EPSI study with a time resolution of 20.5 s on the calf muscle of volunteers, spectra showed a 40% decrease of the PCr signal intensity (at rest: S/N congruent with12) upon exertion of the muscle.     

A hybrid technique for spectroscopic imaging with reduced truncation artifact

Traditionally, Fourier spectroscopic imaging is associated with a small k-space coverage which leads to truncation artifacts such as "bleeding" and ringing in the resultant image. Because substantial truncation artifacts mainly arise from regions having intense signals, such as the subcutaneous lipid in the head, effective reduction of truncation artifacts can be achieved by obtaining an extended k-space coverage for these regions. In this paper, a hybrid technique which employs phase-encoded spectroscopic imaging (SI) to cover the central portion of the k-space and echo-planar spectroscopic imaging (EPSI) to measure the peripheral portion of the k-space is developed. EPSI, despite its inherently low SNR characteristics, provides a sufficient SNR for outer high-spatial frequency components of the aforementioned high signal regions and supplies an extended k-space coverage of these regions for the reduction of truncation artifacts. The data processing includes steps designed to remove inconsistency between the two types of data and a previously described technique for selectively retaining only outer k-space information for the high signal regions during the reconstruction. Experimental studies, in both phantoms and normal volunteers, demonstrate that the hybrid technique provides significant reduction in truncation artifacts.     

Theoretical Evaluation and Comparison of Fast Chemical Shift Imaging Methods

Magnetic resonance chemical shift imaging (CSI) is becoming the method of choice for localized NMR spectroscopic examinations, allowing simultaneous detection of NMR spectra from a large number of voxels. The main limitation of these methods is their long experimental duration. A number of fast CSI experiments have been presented, promising to reduce that duration. In this contribution the criteria for evaluating and optimizing the sensitivity of fast CSI experiments are elaborated. For a typical experiment in the human brain, the performance of various methods is compared. While conventional CSI provides optimal sensitivity per unit time, it is shown in which circumstances fast sequences allow a shorter experimental duration. Using these results, the best method for any experimental requirements can be selected.     

Spectrally resolved flow imaging of fluids inside a microfluidic chip with ultrahigh time resolution

Microfluidics has advanced to become a complete lab-on-a-chip platform with applications across many disciplines of scientific research. While optical techniques are primarily used as modes of detection, magnetic resonance (MR) is emerging as a potentially powerful and complementary tool because of its non-invasive operation and analytical fidelity. Two prevailing limitations currently inhibit MR techniques on microfluidic devices: poor sensitivity and the relatively slow time scale of dynamics that can be probed. It is commonly assumed that the time scale of observation of one variable limits the certainty with which one can measure the complementary variable. For example, short observation times imply poor spectral resolution. In this article, we demonstrate a new methodology that overcomes this fundamental limit, allowing in principle for arbitrarily high temporal resolution with a sensitivity across the entire microfluidic device several orders of magnitude greater than is possible by direct MR measurement. The enhancement is evidenced by recording chemically resolved fluid mixing through a complex 3D microfluidic device at 500 frames per second, the highest recorded in a magnetic resonance imaging experiment. The key to this development is combining remote detection with a time ‘slicing’ of its spatially encoded counterpart. Remote detection circumvents the problem of insensitive direct MR detection on a microfluidic device where the direct sensitivity is less than 10^-5 relative to traditional NMR, while the time slicing eliminates the constraints of the limited observation time by converting the time variable into a spatial variable through the use of magnetic field gradients. This method has implications for observing fast processes, such as fluid mixing, rapid binding, and certain classes of chemical reactions with sub millisecond time resolution and as a new modality for on-chip chromatography.     

Correction of local B0 shifts in 3D EPSI of the human brain at 4 T

High-spatial-resolution acquisition (HR) was previously proposed for 3D echo-planar spectroscopic imaging (EPSI) in combination with a high-spatial-resolution water reference EPSI data set to minimize inhomogeneous spectral line broadening, allowing for local frequency shift (B(0) shift) correction in human brain metabolite maps at 1.5 T (Ebel A et al., Magn. Reson. Imaging 21:113-120, 2003). At a higher magnetic field strength, B(0), increased field inhomogeneities typically lead to increased line broadening. Additionally, increased susceptibility variations render shimming of the main magnetic field over the whole head more difficult. This study addressed the question whether local B(0)-shift correction still helps limit line broadening in whole-brain 3D EPSI at higher magnetic fields. The combination of HR and local B(0)-shift correction to limit line broadening was evaluated at 4 T. Similar to the results at 1.5 T, the approach provided a high yield of voxels with good spectral quality for 3D EPSI, resulting in improved brain coverage.     

Application of perceptual difference model on regularization techniques of parallel MR imaging

Parallel magnetic resonance imaging through sensitivity encoding using multiple receiver coils has emerged as an effective tool to reduce imaging time or to improve image SNR. The quality of reconstructed images is limited by the inaccurate estimation of the sensitivity map, noise in the acquired k-space data and the ill-conditioned nature of the coefficient matrix. Tikhonov regularization is a popular method to reduce or eliminate the ill-conditioned nature of the problem. In this approach, selection of the regularization map and the regularization parameter is very important. Perceptual difference model (PDM) is a quantitative image quality evaluation tool that has been successfully applied to varieties of MR applications. High correlation between the human rating and PDM score shows that PDM should be suitable to evaluate image quality in parallel MR imaging. By applying PDM, we compared four methods of selecting the regularization map and four methods of selecting the regularization parameter. We found that a regularization map obtained using generalized series (GS) together with a spatially adaptive regularization parameter gave the best reconstructions. PDM was also used as an objective function for optimizing two important parameters in the spatially adaptive method. We conclude that PDM enables one to do comprehensive experiments and that it is an effective tool for designing and optimizing reconstruction methods in parallel MR imaging.     

用于测量J偶合常数的同时多层选择性恒时J分解谱的方法

标量偶合是核磁共振（NMR）波谱的一个重要参数.其中氢-氢偶合能提供关于分子结构的有用信息.但是,在复杂的偶合网络中解析出氢-氢偶合常数（J_H-H）较为困难.本文提出了一种基于空间编码选择性恒时演化的测量J_H-H的方法,利用一次实验就能解析分子中所有氢核的偶合网络,并测量J_H-H.该方法被称为同时多层选择性恒时J分解谱（SMS-SECTJRES）.它结合空间编码梯度和选择性恒时演化,并利用平面回波谱成像（EPSI）采样模块,从不同的空间位置提取出对应不同氢核偶合网络的J分解谱,促进了NMR技术在分子结构解析中的进一步应用.     

Characterization of a 3D MEMS fabricated micro-solenoid at 9.4 T

We present for the first time a complete characterization of a micro-solenoid for high resolution MR imaging of mass- and volume-limited samples based on three-dimensional B(0), B(1) per unit current (B(1)(unit)) and SNR maps. The micro-solenoids are fabricated using a fully micro-electromechanical systems (MEMS) compatible process in conjunction with an automatic wire-bonder. We present 15 μm isotropic resolution 3D B(0) maps performed using the phase difference method. The resulting B(0) variation in the range of [-0.07 ppm to -0.157 ppm] around the coil center, compares favorably with the 0.5 ppm limit accepted for MR microscopy. 3D B(1)(unit) maps of 40 μm isotropic voxel size were acquired according to the extended multi flip angle (ExMFA) method. The results demonstrate that the characterized microcoil provides a high and uniform sensitivity distribution around its center (B(1)(unit) = 3.4 mT/A ± 3.86%) which is in agreement with the corresponding 1D theoretical data computed along the coil axis. The 3D SNR maps reveal a rather uniform signal distribution around the coil center with a mean value of 53.69 ± 19%, in good agreement with the analytical 1D data along coil axis in the axial slice. Finally, we prove the microcoil capabilities for MR microscopy by imaging Eremosphaera viridis cells with 18 μm isotropic resolution.     

Fast nosologic imaging of the brain

Magnetic resonance spectroscopic imaging (MRSI) provides information about the spatial metabolic heterogeneity of an organ in the human body. In this way, MRSI can be used to detect tissue regions with abnormal metabolism, e.g. tumor tissue. The main drawback of MRSI in clinical practice is that the analysis of the data requires a lot of expertise from the radiologists. In this article, we present an automatic method that assigns each voxel of a spectroscopic image of the brain to a histopathological class. The method is based on Canonical Correlation Analysis (CCA), which has recently been shown to be a robust technique for tissue typing. In CCA, the spectral as well as the spatial information about the voxel is used to assign it to a class. This has advantages over other methods that only use spectral information since histopathological classes are normally covering neighbouring voxels. In this paper, a new CCA-based method is introduced in which MRSI and MR imaging information is integrated. The performance of tissue typing is compared for CCA applied to the whole MR spectra and to sets of features obtained from the spectra. Tests on simulated and in vivo MRSI data show that the new method is very accurate in terms of classification and segmentation. The results also show the advantage of combining spectroscopic and imaging data.     

A four-element phased array coil for high resolution and parallel MR imaging of the knee

A four-element phased array coil for MR imaging of the knee was designed, built and tested for clinical use at 1.5 Tesla. In routine imaging, it provides over twofold increase in signal-to-noise (SNR) compared to two commercially available knee coils, and supports higher spatial image resolution. The phased array knee coil was also tested for its compatibility with parallel MR imaging that reduces imaging time by several folds over conventional MR technique. Results obtained using SiMultaneous Acquisition of Spatial Harmonics (SMASH) technique shows that our phased array knee coil can be used with parallel MR imaging. These improvements may enhance knee diagnosis with higher image quality and reduced scan time.     

光外差-磁旋转-浓度调制光谱技术

介绍了一种针对瞬态分子光谱测量的新技术:光外差磁旋转浓度调制光谱技术,这种光谱技术具有很高的灵敏度,综合了光外差探测技术、磁旋转光谱技术和浓度调制光谱技术的特点,利用浓度调制光谱技术针对寿命很短的瞬态分子和激发态分子的光谱进行测量,利用光外差探测技术可以消除来自光源的幅度涨落噪声,实现散粒噪声的测量极限,利用磁旋转光谱技术可以对顺磁性分子进行选择性的测量,并且进一步提高探测灵敏度。详细讨论了这种光谱技术的工作原理,并用这种技术对O2分子的b1Σg+-X3Σg-三重禁戒跃迁光谱进行测量,获得了很好的测量信噪比。并对该技术的灵敏度作了详细的分析,估计最小相对吸收度可达1.9×10-9以及O2分子三重禁戒跃迁的吸收截面为σ=2.4×10-24cm2。     

Digital Filter Banks in MR Measurement of Gradient Magnetic Fields

The sensitivity of spectroscopic methods based on nuclear magnetic resonance (MR) is limited, in particular by the magnitude of noise in the signal being measured. In MR tomography and, above all, in localized spectroscopy and spectroscopic MR imaging, this problem becomes even more pronounced. When gradient magnetic fields are used, it cannot be fully ruled out that there will be a change in the basic magnetic field due to the eddy currents in conducting materials in the neighborhood of the sample being measured. This results in a local change in instantaneous frequency of the resonance of nuclei and in a distortion of spectral lines or MR image. For methods that eliminate this distortion and for an accurate calculation of the constants of (in particular long) preemphasis filters, techniques have been developed and experimentally tested that are based on measuring the instantaneous frequency of the signal detected with a very low signal-to-noise ratio. Adaptive filtering methods and filtering based on filter banks have been developed to reduce the level of noise. Results of these two types of filtering are described in the paper. The filtering techniques developed can be used also in other applications and thus contribute to increasing quality of methods for examining the properties of biological and chemical substances. Authors' address: Eva Gescheidtova, Department of Theoretical and Experimental Electrical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Kolejni 2906/4, Brno 61200, Czech Republic     

Multichannel transceiver dual-tuned RF coil for proton/sodium MR imaging of knee cartilage at 3 T

Sodium magnetic resonance (MR) imaging is a promising technique for detecting changes of proteoglycan (PG) content in cartilage associated with knee osteoarthritis. Despite its potential clinical benefit, sodium MR imaging in vivo is challenging because of intrinsically low sodium concentration and low MR signal sensitivity. Some of the challenges in sodium MR imaging may be eliminated by the use of a high-sensitivity radiofrequency (RF) coil, specifically, a dual-tuned (DT) proton/sodium RF coil which facilitates the co-registration of sodium and proton MR images and the evaluation of both physiochemical and structural properties of knee cartilage. Nevertheless, implementation of a DT proton/sodium RF coil is technically difficult because of the coupling effect between the coil elements (particularly at high field) and the required compact design with improved coil sensitivity. In this study, we applied a multitransceiver RF coil design to develop a DT proton/sodium coil for knee cartilage imaging at 3 T. With the new design, the size of the coil was minimized, and a high signal-to-noise ratio (SNR) was achieved. DT coil exhibited high levels of reflection S11 (～-21 dB) and transmission coefficient S12 (～-19 dB) for both the proton and sodium coils. High SNR (range 27-38) and contrast-to-noise ratio (CNR) (range 15-21) were achieved in sodium MR imaging of knee cartilage in vivo at 3-mm(3) isotropic resolution. This DT coil performance was comparable to that measured using a sodium-only birdcage coil (SNR of 28 and CNR of 20). Clinical evaluation of the DT coil on four normal subjects demonstrated a consistent acquisition of high-resolution proton images and measurement of relative sodium concentrations of knee cartilages without repositioning of the subjects during the same MR scanning session.     

Wavelet Encoding Spectroscopic Imaging in Small FOV Regime: Comparison to Chemical Shift Imaging at 3?Tesla

We have recently proposed a new magnetic resonance spectroscopic imaging (MRSI) technique called wavelet encoding spectroscopic imaging (WE-SI), and described its implementation on a clinical 1.5?T scanner. This technique is proposed as an alternative to chemical shift imaging (CSI), to decrease acquisition time, and voxel contamination. The proposed method is implemented here on a clinical 3?T scanner. Phantom and in vivo studies are chosen to validate the technique at higher field, as well as to fully explore the usefulness of this technique, and find its niche of application in the chain of existing MRSI techniques. In wavelet encoding, a set of dilated and translated wavelets are used to span a localized space by dividing it into a set of sub-spaces with pre-determined sizes and locations. Due to their simple shapes, Haar wavelets are chosen. They are represented in the modified PRESS sequence by the selective excitation and refocusing radio-frequency (RF) pulses. The wavelets dilation and translation are achieved by changing the strength of the localization gradients and frequency shift of the RF pulses, respectively. Data acquisition time is reduced using the minimum recovery time when successive MR signals from adjacent sub-spaces are collected. The results obtained at 3?T confirm those obtained at 1.5?T, and demonstrate that despite the low signal-to-noise ratio, the proposed WE-SI provides accurate results and reduces both voxel contamination and acquisition time as compared to CSI. This applies especially in the small field-of-view regime where only a small number of voxels is required.     

Displacement sensor based on polarization mixture of orthogonal polarized He-Ne laser at 1.15μm

Displacement sensor based on the polarization mixture and the cavity tuning of the orthogonal polarized He-Ne laser 1.15μm is presented.The power tuning curves of He-Ne laser are irregular,and it is difficult to measure the change in cavity length.The distortion of the curves is caused by the higher relative excitation compared with the He-Ne laser at 633 nm.In view of its potential for the wider displacement measuring range,a new method of displacement sensing is developed.Experiments show that displacement measuring stability based on the method of the polarization mixture is better than that of the power tuning curves. The displacement sensor achieves the measuring range of 100 mm,resolution of 144 nm,and linearity of 7×10-6 .     

A self consistent normalized calibration protocol for three dimensional magnetic resonance gel dosimetry

In a clinical setting, mixed and inconsistent results have been reported using Magnetic Resonance Relaxation imaging of irradiated aqueous polymeric gels as a three-dimensional dosimeter, for dose verification of conformal radiation therapy. The problems are attributed to the difficulty of identifying an accurate dose calibration protocol for each delivered gel at the radiation site in a clinical setting. While careful calibration is done at the gel manufacturing site in a controlled laboratory setting, there is no guarantee that the dose sensitivity of the gels remains invariant upon delivery, irradiation, magnetic resonance imaging and storage at the clinical site. In this study, we have compared three different dose calibration protocols on aqueous polymeric gels for a variety of irradiation scenarios done in a clinical setting. After acquiring the three-dimensional proton relaxation maps of the irradiated gels, the dose distributions were generated using the off-site manufacturer provided calibration curve (Cal-1), the on-site external tube gel calibration (Cal-2) and the new on-site internal normalized gel calibration (Cal-3) protocols. These experimental dose distributions were compared with the theoretical dose distributions generated by treatment-planning systems. We observed that the experimental dose distributions generated from the Cal-1 and Cal-2 protocols were off by 10% to 40% and up to 200% above the predicted maximum dose, respectively. On the other hand, the experimental dose distributions generated from the Cal-3 protocol matched reasonably well with the theoretical dose distributions to within 10% difference. Our result suggests that an independent on-site normalized internal calibration must be performed for each batch of gel dosimeters at the time of MR relaxation imaging in order to account for the variations in dose sensitivity caused by various uncontrollable conditions in a clinical setting such as oxygen contamination, temperature changes and shelf life of the delivered gel between manufacturing and MR acquisitions.     

Spatially encoded pulse sequences for the acquisition of high resolution NMR spectra in inhomogeneous fields

We have recently proposed a protocol for retrieving nuclear magnetic resonance (NMR) spectra based on a spatially-dependent encoding of the MR interactions. It has also been shown that the spatial selectivity with which spins are manipulated during such encoding opens up new avenues towards the removal of magnetic field inhomogeneities; not by demanding extreme Bo field uniformities, but rather by compensating for the dephasing effects introduced by the field distribution at a radiofrequency excitation and/or refocusing level. The present study discusses in further detail a number of strategies deriving from this principle, geared at acquiring both uni- as well as multi-dimensional spectroscopic data at high resolution conditions. Different variants are presented, tailored according to the relative sensitivity and chemical nature of the spin system being explored. In particular a simple multi-scan experiment is discussed capable of affording substantial improvements in the spectral resolution, at nearly no sensitivity or scaling penalties. This new compensation scheme is therefore well-suited for the collection of high-resolution data in low-field systems possessing limited signal-to-noise ratios, where magnetic field heterogeneities might present a serious obstacle. Potential areas of applications of these techniques include high-field in vivo NMR studies in regions near tissue/air interfaces, clinical low field MR spectroscopy on relatively large off-center volumes difficult to shim, and ex situ NMR. The principles of the different compensation methods are reviewed and experimentally demonstrated for one-dimensional inhomogeneities; further improvements and extensions are briefly discussed.     

Spectroscopic imaging display and analysis.

A system for display of magnetic resonance (MR) spectroscopic imaging (SI) data is described which provides for efficient review and analysis of the multidimensional spectroscopic and spatial data format of this technique. Features include the rapid display of spectra from selected image voxels, formation of spectroscopic images, spectral and image data processing operations, methods for correlating spectroscopic image data with high resolution 1H MR images, and hardcopy facilities. Examples are shown for 31P and 1H spectroscopic imaging studies obtained in human and rat brain.