Swimming in external fields

Microswimmers move autonomously but are subject to external fields, which influence their swimming path and their collective dynamics. With three concrete examples we illustrate swimming in external fields and explain the methodology to treat it. First, an active Brownian particle shows a conventional sedimentation profile in a gravitational field but with increased sedimentation length and some polar order along the vertical. Bottom-heavy swimmers are able to invert the sedimentation profile.Second, active Brownian particles interacting by hydrodynamic flow fields in a three-dimensional harmonic trap can spontaneously break the isotropic symmetry. They develop polar order, which one can describe by mean-field theory reminiscent to Weiss theory of ferromagnetism, and thereby pump fluid.Third, a single microswimmer shows interesting non-linear dynamics in Poiseuille flow including swinging and tumbling trajectories. For pushers, hydrodynamic interactions with bounding surfaces stabilize either straight swimming against the flow or tumbling close to the channel wall, while pushers always move on a swinging trajectory with a specific amplitude as limit cycle.     

Diffusion of colloidal particles in swimming suspensions

Previously, we have proposed to analyse the hydrodynamic interactions in a suspension of swimmers with respect to an effective hydrodynamic diffusion coefficient, which only considers the fluctuating motion caused by the stirring of the fluid. In this work, we study the diffusion of colloidal particles immersed in a bath of swimmers. To accurately resolve the many-body hydrodynamic interactions responsible for this diffusion, we use a direct numerical simulation scheme based on the smooth profile method. We consider a squirmer model for the self-propelled swimmers, as it accurately reproduces the flow field generated by real microorganisms, such as bacteria or spermatozoa. We show that the diffusion coefficients of the colloids are comparable with the effective diffusion coefficients of the swimmers, provided that the concentration of swimmers is high enough. At low concentrations, the difference in the way colloids and swimmers react to the flow leads to a reduction in the diffusion coefficient of the colloids. This is clearly seen in the appearance of a negative-correlation region for the velocity-correlation function of the colloids, which does not exist for the swimmers.     

Hydrodynamic Synchronisation of Model Microswimmers

We define a model microswimmer with a variable cycle time, thus allowing the possibility of phase locking driven by hydrodynamic interactions between swimmers. We find that, for extensile or contractile swimmers, phase locking does occur, with the relative phase of the two swimmers being, in general, close to 0 or π, depending on their relative position and orientation. We show that, as expected on grounds of symmetry, self T-dual swimmers, which are time-reversal covariant, do not phase-lock. We also discuss the phase behaviour of a line of tethered swimmers, or pumps. These show oscillations in their relative phases reminiscent of the metachronal waves of cilia.     

Breakdown of hydrodynamics in a simple one-dimensional fluid

We investigate the behavior of a one-dimensional diatomic fluid under a shock wave excitation. We find that the properties of the resulting shock wave are in striking contrast with those predicted by hydrodynamic and kinetic approaches; e.g., the hydrodynamic profiles relax algebraically toward their equilibrium values. Deviations from local thermodynamic equilibrium are persistent, decaying as a power law of the distance to the shock layer. Nonequipartition is observed infinitely far from the shock wave, and the velocity-distribution moments exhibit multiscaling. These results question the validity of simple hydrodynamic theories to understand collective behavior in 1D fluids.     

Finite-temperature collective dynamics of a Fermi gas in the BEC-BCS crossover

We report on experimental studies on the collective behavior of a strongly interacting Fermi gas with tunable interactions and variable temperature. A scissors mode excitation in an elliptical trap is used to characterize the dynamics of the quantum gas in terms of hydrodynamic or near-collisionless behavior. We obtain a crossover phase diagram for collisional properties, showing a large region where a nonsuperfluid strongly interacting gas shows hydrodynamic behavior. In a narrow interaction regime on the BCS side of the crossover, we find a novel temperature-dependent damping peak, suggesting a relation to the superfluid phase transition.     

Macroscopic behavior of non-polar tetrahedratic nematic liquid crystals

We discuss the symmetry properties and the macroscopic behavior of a nematic liquid crystal phase with D_2d symmetry. Such a phase is a prime candidate for nematic phases made from banana-shaped molecules where the usual quadrupolar order coexists with octupolar (tetrahedratic) order. The resulting nematic phase is nonpolar. While this phase could resemble the classic D _∞h nematic in the polarizing microscope, it has many static as well as reversible and irreversible properties unknown to nonpolar nematics without octupolar order. In particular, there is a linear gradient term in the free energy that selects parity leading to ambidextrously helical ground states when the molecules are achiral. In addition, there are static and irreversible coupling terms of a type only met otherwise in macroscopically chiral liquid crystals, e.g. the ambidextrous analogues of Lehmann-type effects known from cholesteric liquid crystals. We also discuss the role of hydrodynamic rotations about the nematic director. For example, we show how strong external fields could alter the D_2d symmetry, and describe the non-hydrodynamic aspects of the dynamics, if the two order structures, the nematic and the tetrahedratic one, rotate relative to each other. Finally, we discuss certain nonlinear aspects of the dynamics related to the non-commutativity of three-dimensional finite rotations as well as other structural nonlinear hydrodynamic effects.     

Collective beating of artificial microcilia

We combine technical, experimental, and theoretical efforts to investigate the collective dynamics of artificial microcilia in a viscous fluid. We take advantage of soft lithography and colloidal self-assembly to devise microcarpets made of hundreds of slender magnetic rods. This novel experimental setup is used to investigate the dynamics of extended cilia arrays driven by a precessing magnetic field. Whereas the dynamics of an isolated cilium is a rigid body rotation, collective beating results in a symmetry breaking of the precession patterns. The trajectories of the cilia are anisotropic and experience a significant structural evolution as the actuation frequency increases. We present a minimal model to account for our experimental findings and demonstrate how the global geometry of the array imposes the shape of the trajectories via long-range hydrodynamic interactions.     

Hamiltonian traffic dynamics in microfluidic-loop networks

Recent microfluidic experiments revealed that large particles advected in a fluidic loop display long-range hydrodynamic interactions. However, the consequences of such couplings on the traffic dynamics in more complex networks remain poorly understood. In this Letter, we focus on the transport of a finite number of particles in one-dimensional loop networks. By combining numerical, theoretical, and experimental efforts, we evidence that this collective process offers a unique example of Hamiltonian dynamics for hydrodynamically interacting particles. In addition, we show that the asymptotic trajectories are necessarily reciprocal despite the microscopic traffic rules explicitly break the time-reversal symmetry. We exploit these two remarkable properties to account for the salient features of the effective three-particle interaction induced by the exploration of fluidic loops.     

Dynamical regimes in the dissipative particle dynamics model

We discuss theoretically the behavior of the velocity autocorrelation function in the dissipative particle dynamics (DPD) model. Two dynamical regimes are identified depending on the dimensionless model parameters. For low values of the dimensional friction, a mean field behavior is observed in which the kinetic theory for the DPD model provides good predictions. For high values of the friction, collective hydrodynamic effects are dominant. We have performed numerical simulations that validate the theory presented.     

Nonlinear finite amplitude vibrations of sharp-edged beams in viscous fluids

In this paper, we study flexural vibrations of a cantilever beam with thin rectangular cross section submerged in a quiescent viscous fluid and undergoing oscillations whose amplitude is comparable with its width. The structure is modeled using Euler–Bernoulli beam theory and the distributed hydrodynamic loading is described by a single complex-valued hydrodynamic function which accounts for added mass and fluid damping experienced by the structure. We perform a parametric 2D computational fluid dynamics analysis of an oscillating rigid lamina, representative of a generic beam cross section, to understand the dependence of the hydrodynamic function on the governing flow parameters. We find that increasing the frequency and amplitude of the vibration elicits vortex shedding and convection phenomena which are, in turn, responsible for nonlinear hydrodynamic damping. We establish a manageable nonlinear correction to the classical hydrodynamic function developed for small amplitude vibration and we derive a computationally efficient reduced order modal model for the beam nonlinear oscillations. Numerical and theoretical results are validated by comparison with ad hoc designed experiments on tapered beams and multimodal vibrations and with data available in the literature. Findings from this work are expected to find applications in the design of slender structures of interest in marine applications, such as biomimetic propulsion systems and energy harvesting devices.     

Low Reynolds number hydrodynamics and mesoscale simulations

Hydrodynamics and hydrodynamic interactions are fundamental for the motility of microswimmers. This includes the propulsion mechanism itself, the synchronized motion of flagella in flagellar bundles and beating cilia of cilia arrays, and even extends to collective behaviors. The general importance of hydrodynamics has stimulated the development of mesoscale simulation approaches to efficiently study dynamical properties of objects embedded in a fluid. In this minireview, the properties of flows at low Reynolds numbers are discussed, thereby the unsteady acceleration term is typically taken into account (Landau-Lifshitz Navier-Stokes equations). Specifically, the synchronization of microrotors by time-dependent hydrodynamic interactions is discussed and the propulsion of a rotating helix. Moreover, the multiparticle collisions dynamics method (MPC), a mesoscale simulation approach for fluids, is outlined. Simulation results for the flow field of a model E. Coli bacterium and its swimming behavior next to a surface are presented.     

Dynamics of nematics with conformational degrees of freedom

On the basis of Hamilton approach the dynamics of the biaxial nematics is considered. All hydrodynamic parameters, connected with broken symmetry, are introduced in terms of the distortion tensor. The equations of ideal hydrodynamics are obtained and the three spectra of collective excitations of biaxial nematics are considered, taking into account the rod-shape of molecules.     

Time-dependent collective behavior in a computer network model

The collective dynamics of large-scale computer networks remains elusive due to not only the internal adaptive behaviors of network-wide flows, but also the spatial–temporal changes in the external environment. In this paper, we investigate the time-dependent collective behavior by using a computer network model, recently developed to study space–time characteristics of congestion in large networks. We use the evolving correlation pattern, the largest eigenvalue, and the information entropy to analyze the macroscopic pattern of changing network congestion. We find the collective behavior becomes more pronounced during transient periods of pattern shifting, and the macroscopic pattern becomes gradually indistinct as the observed timescale increases to some extent. We also find that the evolving pattern of spatial–temporal correlation is more useful to reveal the time-dependent collective behavior of our model at different forcing levels.     

Hydrodynamic synchronization of flagellar oscillators

In this review, we highlight the physics of synchronization in collections of beating cilia and flagella. We survey the nonlinear dynamics of synchronization in collections of noisy oscillators. This framework is applied to flagellar synchronization by hydrodynamic interactions. The time-reversibility of hydrodynamics at low Reynolds numbers requires swimming strokes that break time-reversal symmetry to facilitate hydrodynamic synchronization. We discuss different physical mechanisms for flagellar synchronization, which break this symmetry in different ways.     

Rowers coupled hydrodynamically. Modeling possible mechanisms for the cooperation of cilia

We introduce a model system of stochastic entities, called rowers which include some essentials of the behavior of real cilia. We introduce and discuss the problem of symmetry breaking for these objects and its connection with the onset of macroscopic, directed flow in the fluid. We perform a mean field-like calculation showing that hydrodynamic interaction may provide for the symmetry breaking mechanism and the onset of fluid flow. Finally, we discuss the problem of the metachronal wave in a stochastic context through an analytical calculation based on a path integral representation of our model equation. Received 12 June 2001 and Received in final form 9 January 2002     

Convective motion and transfer of force by many-body hydrodynamic interaction

We consider hydrodynamic interactions between N rigid bodies of arbitrary shape immersed in an incompressible fluid. When the bodies are carried along by an incident flow without exerting forces or torques on the fluid then their translational and rotational velocities are linearly related to the incident flow velocity by convection kernels. In the absence of an incident flow, but with applied forces and torques, the force density acting on the fluid is linearly related to the forces and torques by transfer kernels. We show that the convection and transfer kernels are simply related by a symmetry relation. For freely moving bodies the force density exerted on the fluid is related to the incident flow by a convective friction kernel. We show that this kernel is symmetric.     

Heterogeneous diffuse interfaces: A new mechanism for arrested coarsening in binary mixtures Heterogeneous diffuse interfaces

We discuss the dynamics of binary fluid mixtures in which surface tension density is allowed to become locally negative within the interface, while still preserving positivity of the overall surface tension (heterogeneous diffuse interface). Numerical simulations of two-dimensional Ginzburg-Landau phase field equations implementing such mechanism and including hydrodynamic motion, show evidence of dynamically arrested domain coarsening. Under specific conditions on the functional form of the surface tension density, dynamical arrest can be interpreted in terms of the collective dynamics of metastable, non-linear excitations of the density field, named compactons, as they are localized to finite-size regions of configuration space and strictly zero elsewhere. Aside from compactons, the heterogeneous diffuse interface scenario appears to provide a robust mechanism for the interpretation of many aspects of soft-glassy behaviour in binary fluid mixtures.     

Heterogeneous diffuse interfaces: a new mechanism for arrested coarsening in binary mixtures. Heterogeneous diffuse interfaces

We discuss the dynamics of binary fluid mixtures in which surface tension density is allowed to become locally negative within the interface, while still preserving positivity of the overall surface tension (heterogeneous diffuse interface). Numerical simulations of two-dimensional Ginzburg-Landau phase field equations implementing such mechanism and including hydrodynamic motion, show evidence of dynamically arrested domain coarsening. Under specific conditions on the functional form of the surface tension density, dynamical arrest can be interpreted in terms of the collective dynamics of metastable, non-linear excitations of the density field, named compactons, as they are localized to finite-size regions of configuration space and strictly zero elsewhere. Aside from compactons, the heterogeneous diffuse interface scenario appears to provide a robust mechanism for the interpretation of many aspects of soft-glassy behaviour in binary fluid mixtures.     

A Self-Similar Dynamics in Viscous Spheres

We study the evolution of radiating and viscous fluid spheres assuming an additional homothetic symmetry on the spherically symmetric space-time. We match a very simple solution to the symmetry equations with the exterior one (Vaidya). We then obtain a system of two ordinary differential equations which rule the dynamics, and find a self-similar collapse which is shear-free and with a barotropic equation of state. Considering a huge set of initial self-similar dynamics states, we work out a model with an acceptable physical behavior.