Effect of Phosphorylation on the Structural Behaviour of Peptides Derived from the Intrinsically Disordered C-Terminal Domain of Histone H1.0

To investigate the structural impact of phosphorylation on the human histone H1.0 C-terminal domain, we performed NMR structural studies of model peptides containing a single phosphorylation site: T¹¹⁸-H1.0 (T¹¹⁸PKK motif) and T¹⁴⁰-H1.0 (T¹⁴⁰PVK motif). Both model peptides are mainly disordered in aqueous solution in their non-phosphorylated and phosphorylated forms, but become structured in the presence of trifluoroethanol. The peptides T¹¹⁸-H1.0 and pT¹¹⁸-H1.0 contain two helical regions, a long amphipathic α helix spanning residues 104–115 and a short α/3₁₀ helix (residues 119–123), that are almost perpendicular in T¹¹⁸-H1.0 but have a poorly defined orientation in pT¹¹⁸-H1.0. Peptides T¹⁴⁰-H1.0 and pT¹⁴⁰-H1.0 form very similar α helices between residues 141–147. The TPKK and TPVK motifs show the same backbone conformation, but differ in their side-chain contacts; the Thr and pThr side chains interact with the i+2 Lys side chain in the TPKK motif, and with the i+3 Lys side chain in the TPVK motif. The pT phosphate group in pT¹¹⁸-H1.0 and pT¹⁴⁰-H1.0 has pK_a values below the intrinsic values, which can be explained by non-specific charge–charge interactions with nearby Lys. The non-polar Val in the TPVK motif accounts for the pT¹⁴⁰ pK_a being closer to the intrinsic pK_a value than the pT¹¹⁸ pK_a. Altogether, these results validate that minimalist strategies using model peptides can provide structural details difficult to obtain in short-lived intrinsically disordered proteins and domains.     

Influence of interaction between poly(methyl methacrylate) and clay on the properties of nanocomposites prepared by a heterocoagulation method

To have a better insight into the effect of interaction between polymer matrix and clay on the properties of nanocomposite, poly(methyl methacrylate)/clay nanocomposites were prepared by a heterocoagulation method. Using a reactive cationic emulsifier, methacryloyloxyethyltrimethyl ammonium chloride (METAC), a strong polymer–clay interaction was obtained with the advantage of keeping a consistent polymer matrix property. X‐ray diffraction and transmission electronic microscopy indicated an exfoliated structure in nanocomposites. The glass transition temperature (T_g) of the nanocomposites was measured by DSC and DMA. The DMA results showed that with a strong interaction, PMMA–METAC nanocomposite showed a 20 °C enhancement in glass transition temperature (T_g), whereas a slight increase in T_g was observed for PMMA–cetyl trimethylammonium bromide (CTAB)/clay nanocomposite with a weak interaction. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 733–738, 2010     

A re‐examination of the sub‐Tm exotherm in polyamide 6: The roles of thermal history,water and clay

The sub‐T_m exotherms in polyamide 6 (PA6) have been carefully re‐examined by differential scanning calorimetry and X‐ray diffraction, considering the effects of processing and thermal history, addition of water and clay. The results obtained cast doubt on Khanna's proposal that sub‐T_m exotherm in PA6 comes from the release of strain energy absorbed during processing, and suggested that the origin of sub‐T_m exotherm is the γ?α transformation at the premelting temperature, namely, the less thermodynamically stable γ‐form (γ^ns) transforming into the more thermodynamically stable α‐form (α^s). The presence of water or clay in PA6 samples facilitated the formation of γ^ns at corresponding cooling rates, and enhanced the development of sub‐T_m exotherms. During the heating scan of PA6/clay composites, the initial γ^ns can be transformed into more stable (γ^s)^t and α^s at the same time, which can be thought as the origin of their sub‐T_m events. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 2385–2393, 2009     

Intercalation of solvent and polymer in galleries of mobile clay platelets by a Monte Carlo simulation

The intercalation of solvent particles and polymer chains of concentration C_w = 0.2 and C_p = 0.2, respectively, in a layer of (4) clay platelets is studied by a Monte Carlo simulation on a cubic lattice. Polymer chains and platelets are modeled by bond fluctuations. Besides the excluded volume, a set of polymer-clay (cs) and solvent-clay (ws) interactions with (i) cs = 1, ws = −2, (ii) cs = −2, ws = 1 and (iii) cs = ws = −2 are considered. The global dynamics of platelets is constrained due to the presence of three components, i.e., solvent, polymer, and platelets, which retain their interstitial spacing with well-defined galleries. Intercalation of solvent particles and polymer chains (low molecular weight) occurs with their attractive interaction with the platelets, which further reinforces the layered clay morphology. The density profiles of the solvent particles are similar to previous studies with platelets in a mobile solvent. The density profile of polymer chains differs considerably from the platelets in a polymer matrix alone, particularly with its attractive interaction (ii). For the same attractive interaction of solvent and polymer chains with the clay platelets (iii), the solvent particles (the smallest constituents) intercalate the fastest in the clay galleries, whereas the intercalation of polymer chains decreases with their molecular weight. The polymer density profiles, both longitudinal (x) and transverse (y), show maxima peaks around outer platelets (surface) of the layer and decay sharply both in the adjacent galleries and in the bulk. The amplitude of oscillation in the transverse density profiles, a measure of the degree of intercalation, decreases with increasing molecular weight of the polymer. The intercalation of the polymer is driven by its attractive interaction at the low molecular weight, but reduces considerably at high molecular weight because of both entanglement and larger radius of gyration. Variations of the gyration radius of the diffusing polymer chains with molecular weight and interaction with the clay are consistent with the results of their corresponding density profiles. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 2487–2500, 2009     

Affinity Maturation of Macrocyclic Peptide Modulators of Lys48-Linked Diubiquitin by a Twofold Strategy

Messenger RNA display of peptides containing non-proteinogenic amino acids, referred to as RaPID system, has become one of the leading methods to express libraries consisting of more than trillion-members of macrocyclic peptides, which allows for discovering de novo bioactive ligands. Ideal macrocyclic peptides should have dissociation constants (K_D) as low as single-digit values in the nanomolar range towards a specific target of interest. Here, a twofold strategy to discover optimized macrocyclic peptides within this affinity regime is described. First, benzyl thioether cyclized peptide libraries were explored to identify tight binding hits. To obtain more insights into critical sequence information, sequence alignment was applied to guide rational mutagenesis for the improvement of their binding affinity. Using this twofold strategy, benzyl thioether macrocyclic peptide binders against Lys48-linked ubiquitin dimer (K48-Ub2) were successfully obtained that display K_D values in the range 0.3–1.2 nm , which indicate binding two orders of magnitude stronger than those of macrocyclic peptides recently reported. Most importantly, this macrocyclic peptide also showed an improved cellular inhibition of the K48-Ub2 recognition by deubiquitinating enzymes and the 26S proteasome, resulting in the promotion of apoptosis in cancer cells.     

Scaling of the molecular weight‐dependent thermal volume transition of poly(N‐isopropylacrylamide)

A series of narrowly distributed poly(N‐isopropylacrylamide) (PNIPAM) with molecular weight ranging from 8 × 10⁴ to 2.3 × 10⁷ g/mol were prepared by a combination of free radical polymerization and fractional precipitation. An ultrasensitive differential scanning calorimetry was used to study the effect of molecular weight on the thermal volume transition of these PNIPAM samples. The specific heat peak of the transition temperature (T_p,0) was obtained by extrapolation to zero heating rate (HR) because of the linear dependence of the transition temperature (T_p) on the HR. The relation between T_p,0 and the degree of polymerization (N) was investigated. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1388–1393, 2010     

1H‐NMR relaxometric studies of interaction between apoptosis specific MRI paramagnetic contrast agents and micellar models of apoptotic cells

¹H‐NMR was previously used to analyze the interaction between peptides (E3 and R826) selected by phage display to target apoptotic cells and phospholipidic models of these cells. In order to avoid the use of apoptotic cells and to obtain a fast evaluation of the efficiency of the potential MRI contrast agents obtained by grafting these peptides and their scramble analogs on a paramagnetic gadolinium complex, their proton relaxometric behavior was investigated in the presence of micelles mimicking healthy and apoptotic cells. Their preferential interaction with 1,2‐dipalmitoyl‐sn‐glycero‐3‐phospho‐l ‐serine micelles mimicking apoptotic cells as compared with 1,2‐dipalmitoyl‐sn‐glycero‐3‐phosphocholine micelles modeling healthy cells was shown by nuclear magnetic relaxation dispersion profiles and the enhancement of the transverse proton relaxation rates at 60 MHz. The association constant values confirm the stronger interaction of the selected conjugated peptides (K_a Gd‐PMN‐E3(gadolinium 2,2′,2′′,2′′′‐[((4‐carboxy)pyridine‐2,6‐diyl)bis(methylenenitrilo)]‐tetrakis acetate) grafted with E3 peptide): 2.43 10⁴ m ^?1; K_a Gd‐DTPA‐R826(gadolinium ((1‐p‐isothiocyanatobenzyl)‐diethylenetriaminepentaacetate) grafted with R826 peptide): 2.91 10⁴ m ^?1) as compared with their conjugated scrambles (K_a Gd‐PMN‐E3sc(gadolinium 2,2′,2′′,2′′′‐[((4‐carboxy)pyridine‐2,6‐diyl)bis(methylenenitrilo)]‐tetrakis acetate) grafted with E3 scramble peptide): 0.18 10⁴ m ^?1; K_a Gd‐DTPA‐R826sc(gadolinium ((1‐p‐isothiocyanatobenzyl)‐diethylenetriaminepentaacetate) grafted with R826 scramble peptide): 0.32 10⁴ m ^?1) even if the conjugation of E3 and R826 seems to decrease their interaction. Copyright © 2015 John Wiley & Sons, Ltd.     

Preparation and properties of biocomposites composed of bio‐based epoxy resin,tannic acid,and microfibrillated cellulose

As new bio‐based epoxy resin systems, glycerol polyglycidyl ether (GPE) and sorbitol polyglycidyl ether (SPE) were cured with tannic acid (TA) at various conditions. When the curing conditions were optimized for the improvement of thermal and mechanical properties, the most balanced properties were obtained for the GPE/TA and SPE/TA cured at 160 °C for 2–3 h at the epoxy/hydroxyl ratio of 1/1. The cured SPE/TA had a higher glass transition temperature (T_g) and tensile strength than the cured GPE/TA. Next, biocomposites of GPE/TA and SPE/TA with microfibrillated cellulose (MFC) were prepared by mixing aqueous solution of the epoxy/curing reagent with MFC, and subsequent drying and curing at the optimized condition. For both the GPE/TA/MFC and SPE/TA/MFC biocomposites, T_g and the storage modulus at rubbery plateau region increased with increasing MFC content over the studied range of 3–15 wt %. The tensile strength at 25 °C for GPE/TA/MFC biocomposite with MFC content 10 wt % was 76% higher than that of control GPE/TA, while the tensile modulus was little improved. On the other hand, the tensile strength and modulus of SPE/TA/MFC biocomposite with MFC content 10 wt % were 30 and 55% higher than those of control SPE/TA, respectively. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 425–433, 2010     

Amine‐cured epoxy/clay nanocomposites. II. The effect of the nanoclay aspect ratio

The thermophysical and mechanical properties of a nanocomposite material composed of amine‐cured diglycidyl ether of bisphenol A (DGEBA) reinforced with organomontmorillonite clay are reported. The storage modulus at 100 °C, which was above the glass‐transition temperature (T_g), increased approximately 350% with the addition of 10 wt % (6.0 vol %) of clay. Below the T_g, the storage modulus at 30 °C increased 50% relative to the value of unfilled epoxy. It was determined that the T_g linearly increased as a function of clay volume percent. The tensile modulus of epoxy at room temperature increased approximately 50% with the addition of 10 wt % of clay. The reinforcing effect of the organoclay nanoplatelets is discussed with respect to the Tandon–Weng and Halpin–Tsai models. A pseudoinclusion model is proposed to describe the behavior of randomly oriented, uniformly dispersed platelets in nanocomposite materials. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 4391–4400, 2004     

Poly(methyl methacrylate) copolymers containing multiple,pendent plasticizing groups

New ether dimer (ED‐Eh) and diester (EHDE) derivatives of α‐(hydroxymethyl)acrylate, each having two 2‐ethylhexyl side chains, and an amine‐linked di(2‐ethylhexyl)acrylate (AL‐Eh), having three 2‐ethylhexyl side chains, were synthesized and (co)polymerized to evaluate the effects of differences in the structures of the monomers on final (co)polymer properties, particularly glass transition temperature, T_g. The free radical polymerizations of these monomers yielded high‐molecular–weight polymers. Cyclopolymer formation of ED‐Eh and AL‐Eh was confirmed by ¹³C NMR analysis and the cyclization efficiencies were found to be very high (～100%). Copolymers of ED‐Eh, EHDE, and AL‐Eh with methyl methacrylate (MMA) showed significant T_g decreases over poly(methyl methacrylate) (PMMA) due to 2‐ethylhexyl side groups causing “internal” plasticization. Comparison of the T_g's of the copolymers of 2‐ethylhexyl methacrylate, ED‐Eh, EHDE, and AL‐Eh with MMA revealed that the impacts of these monomers on depression of T_g's are identical with respect to the total concentration of the pendent groups. This is consistent with an earlier study involving copolymers of monomers comprising one and two octadecyl side groups with MMA. That is, the magnitude of decrease in T_g's was quantitatively related to the number of the 2‐ethylhexyl pendent groups in the copolymers rather than their placement on the same or randomly incorporated repeat units. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 2302–2310, 2010     

Porphyrin‐functionalized amphiphilic diblock copolypeptides for photodynamic therapy

A series of amphiphilic diblock copolypeptides (ADCs), 5‐(4‐aminophenyl)‐10,15,20‐triphenyl‐porphyrin (APP) conjugated poly(L ‐leucine)‐block‐polylysine (APP‐L_nK_m) with different molar ratios of L ‐leucine unit and lysine unit were designed and synthesized. The optimized composition of the polypeptide was determined to be APP‐L₁₀₉K₁₈₆, which has high fluorescence quantum yield and could self‐assemble into micelles in an aqueous medium with mean particle size <30 nm. The in vitro study indicates that APP‐L₁₀₉K₁₈₆ shows no significant dark cytotoxicity when the concentration is below 200 mg L^?1 for HepG2 and HeLa cells. In contrast, the polymer exhibits apparent phototoxicity with low IC₅₀ values toward HepG2 and HeLa cells, implying that the potential high photodynamic therapy efficacy of the polymer. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

柚皮素、柚皮苷与溶菌酶相互作用的荧光光谱法研究

应用荧光光谱法研究了50%甲醇/水体系中柚皮素、柚皮苷与溶菌酶分子间的结合反应. 以Lineweaver-Burk双倒数方程和能量传递原理分别计算了两者与溶菌酶反应的结合常数(K)和结合距离(r): K_柚皮素^{25 ℃}＝4.00×10⁴, K_柚皮苷^{25 ℃}＝3.48×10⁴; r_柚皮素＝3.21 nm, r_柚皮苷＝3.30 nm, 以及由热力学参数的计算判断了两种分子与溶菌酶之间的作用力类型. 结果表明: 柚皮素、柚皮苷均能与溶菌酶以疏水作用相结合形成非共价化合物, 从而导致溶菌酶内在荧光的静态猝灭; 相对柚皮素, 柚皮苷与溶菌酶的结合距离增大, 作用强度减弱, 表明黄酮分子上多糖的取代不利于黄酮分子与蛋白之间的亲和作用. 根据Haslam等提出的多酚-蛋白质反应模型, 从分子水平初步探讨了糖取代对黄酮分子与蛋白相互作用减弱的原因.     

A Functional Role for Aβ in Metal Homeostasis? N‐Truncation and High‐Affinity Copper Binding

Accumulation of the β‐amyloid (Aβ) peptide in extracellular senile plaques rich in copper and zinc is a defining pathological feature of Alzheimer′s disease (AD). The Aβ1–x (x=16/28/40/42) peptides have been the primary focus of Cu^II binding studies for more than 15 years; however, the N‐truncated Aβ4–42 peptide is a major Aβ isoform detected in both healthy and diseased brains, and it contains a novel N‐terminal FRH sequence. Proteins with His at the third position are known to bind Cu^II avidly, with conditional log K values at pH 7.4 in the range of 11.0–14.6, which is much higher than that determined for Aβ1–x peptides. By using Aβ4–16 as a model, it was demonstrated that its FRH sequence stoichiometrically binds Cu^II with a conditional K_d value of 3×10⁻¹⁴ M at pH 7.4, and that both Aβ4–16 and Aβ4–42 possess negligible redox activity. Combined with the predominance of Aβ4–42 in the brain, our results suggest a physiological role for this isoform in metal homeostasis within the central nervous system.     

Equations of state for polyamide‐6 and its nanocomposites. II. Effects of clay

The pressure‐volume‐temperature (PVT) dependencies of polyamide‐6 and its nanocomposites (polymeric nanocomposites) were measured at temperatures T = 300–600 K and pressures P = 0.1–190 MPa, thus spanning the range of molten and “solid” phases. The Simha‐Somcynsky (S‐S) cell‐hole equation of state (EOS) was used for describing the molten region. At T_g(P) ≤ T ≤ T_m(P), the “solid” phase is a mixture of the liquid polyamide‐6 with dispersion of crystals. Accordingly, the PVT behavior in this region was described as a combination of the S‐S EOS for the liquid phase and the Midha‐Nanda‐Simha‐Jain (MNSJ) EOS for the crystalline one. These two theories based on different models yielded two sets of the characteristic reducing parameters, P^*, T^*, V^* and the segmental molecular weight, M_s. Incorporation of 2 and 5 wt % clay increased P^* and reduced T^* and V^*, but the effects were small. Fitting the combination of S‐S and MNSJ EOS' to isobaric “solid” phase data yielded the total crystallinity, X_cryst, and the correcting excess specific volume, ΔV_m,c. Both parameters were sensitive to pressure, P, and the clay content, w—the former increased with P and w, whereas the latter decreased. The raw PVT data were numerically differentiated to obtain the thermal expansion and compressibility coefficients, α and κ, respectively. At T < T_m, addition of clay reduced their relative magnitude, whereas at T > T_m, the opposite effect was observed, most likely owing to the excess of intercalant in the polymeric nanocomposites samples. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 966–980, 2009     

Thermal stability of porcine pepsin influenced by Al(III) ion: DSC study

Differential scanning calorimetry (DCS) has been used to determine thermodynamic profile of pepsin and the in vitro effect of Al(III) ions. Thermograms of pepsin unfolding in the presence and absence of aluminum were used to determine the binding constant, K _L, in the pepsin-aluminium model system. The thermodynamic parameters were derived from DSC profiles at different ligand concentrations (1, 5 and 10 mM). The temperatures of thermal transitions (T _m), calorimetric (ΔH ^cal) and van’t Hoff enthalpy (ΔH ^VH), Gibbs free energy, Δ(ΔG), of Al(III) binding to pepsin, as well as an average number of ligands bound to the native protein, were obtained from DSC profiles too. Temperature-dependent changes in the protein structure were also monitored by native PAGE electrophoresis. Increasing the temperature causes the decrease in electrophoretic mobility. Increase in concentration of Al(III) decelerate the migration of pepsin samples on concentration dependent manner. Analysis showed that ligand binding increases thermal stability of protein.     

Effects of TEMED and EDTA on the structural and mechanical properties of NIPAAm/Na+MMT composite hydrogels

N‐isopropyl acrylamide (NIPAAm) hydrogels are known as thermosensitive crosslinked polymer networks. In this work, the network parameters of their composites, i.e., NIPAAm/sodium montmorillonite (NIPAAm/Na⁺MMT) hydrogels synthesized by free radical solution polymerization in the presence of two different types of accelerator (tetramethyl ethylenediamine (TEMED) and ethylenediamine tetraacetic acid (EDTA)) and initiator (potassium persulphate (K₂S₂O₈) and cerium ammonium nitrate ((NH₄)₂Ce(NO₃)₆), Ce(IV)) using five different clay content (in the range of 1.0–5.0 wt % of total monomer concentration) at 25 °C were presented and discussed. FTIR spectra, XRD patterns, SEM photographs, and network parameters of the samples indicated that the presence of COOH groups on EDTA molecules was resulted in the formation of exfoliated structures and the activity of EDTA/KPS redox pair was higher than those of TEMED/KPS and EDTA/Ce (IV) pairs. The compression moduli (G) of the hydrogels initiated with EDTA/Ce(IV) redox pair showed smooth and continual changings with increase in Na⁺MMT content (for swelling equilibrium at 25 °C) on the contrary of EDTA/KPS and TEMED/KPS pairs. It might be related to low initiator efficiency of cerium ammonium nitrate than KPS molecules, having higher effective crosslinking density with increasing clay content. On the other hand, the G moduli of NIPAAm/Na⁺MMT hydrogels (above their phase transition temperature) initiated with TEMED/KPS redox pair were higher than the others because of the more hydrophobic nature of TEMED molecules. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1256–1264, 2010     

Designed organo‐layered silicates as nanoreactors for 1,3‐butadiene stereospecific polymerization toward rubber nanocomposites synthesis

Organo‐modified layered silicates were synthesized and used as inorganic carriers for CoCl₂(P^tBu₂Me)₂‐MAO catalyst in the polymerization of 1,3‐butadiene, yielding cis‐1,4‐enriched polybutadiene. The organoclays were prepared by: (i) intercalation of (ar‐vinyl‐benzyl)trimethyl ammonium chloride salt through an ion exchange reaction, and (ii) the edge‐surface grafting by trimethylchlorosilane. The ammonium modifier acts as “spacer” increasing the layer d‐spacing and as “filler” favoring the silylation of the edge‐surface clay hydroxyls. The grafted silane prevents the MAO cocatalyst from reacting with the edge‐OHs, by forcing it to react within the interlayer clay region. MAO lead to methylation of the cobalt complex and carbanion abstraction to give a cobalt‐methyl cation that is stabilized by the MAO anion. The nanoconfined cationic alkylated species insert the butadiene on the Co‐Me bond affording the growth of the polymer chains within the clay layers. The growing of the macromolecular chains fills the interlayer silicate region giving an intercalated polybutadiene rubber nanocomposite. The role of the silicate organo modification on the heterogeneous catalyst structural features, the polymerization behavior and the nanocomposite structures are discussed. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Synthesis of poly(2‐ethylhexyl acrylate)/clay nanocomposite by in situ living radical polymerization

This investigation reports the preparation of tailor‐made poly(2‐ethylhexyl acrylate) (PEHA) prepared via in situ living radical polymerization in the presence of layered silicates and characterization of this polymer/clay nanocomposite. Being a low T_g (?65 °C) material, PEHA has very good film formation property for which it is used in paints, adhesives, and coating applications. 2‐Ethylhexyl acrylate was polymerized at 90 °C using CuBr and Cu(0) as catalyst in combination with N,N,N′,N″,N″‐pentamethyl diethylenetriamine (PMDETA) as ligand. A tremendous enhancement in reaction rate and polymerization data was achieved when acetone was added as additive to increase the efficiency of the catalyst system. PEHA/clay nanocomposite was prepared at 90 °C using CuBr as catalyst in combination with PMDETA as ligand. Different types of clay with same loading were also used to study the effect on reaction rate. The molecular weight (M_n) and polydispersity index of the prepared nanocomposites were characterized by size exclusion chromatography. The active end group of the polymer chain was analyzed by ¹H NMR analysis and by chain extension experiment. Polymer/clay interaction was studied by Fourier Transform Infrared spectrometry and wide‐angle X‐ray diffraction analyses. Distribution of clay in the polymer matrix was studied by the transmission electron microscopy. Thermogravimetric analysis showed that thermal stability of PEHA/clay nanocomposite increases on addition of nanoclay. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Influence of local chain dynamics on diffusion of gases in polymers as determined by pulsed field gradient NMR

Diffusion of gases in polymers below the glass transition temperature, T_g, is strongly modulated by local chain dynamics. For this reason, an analysis of pulsed field gradient (PFG) nuclear magnetic resonance (NMR) diffusion measurements considering the viscoelastic behavior of polymers is proposed. Carbon‐13 PFG NMR measurements of [¹³C]O₂ diffusion in polymer films at 298 K are performed. Data obtained in polymers with T_g above (polycarbonate) and below (polyethylene) the temperature set for diffusion measurements are analyzed with a stretched exponential. The results show that the distribution of diffusion coefficients in amorphous phases below T_g is wider than that above it. Moreover, from a PFG NMR perspective, full randomization of the dynamic processes in polymers below T_g requires long diffusion times, which suggests fluctuations of local chain density on a macroscopic scale may occur. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 231–235, 2010     

Determination of Allosteric Effects and Interstrand Bidentate Interactions in DNA‐Peptide Molecular Recognition

To study DNA allostery, quantitative DNase I footprinting studies were carried out on a newly designed peptide His‐Hyp‐Lys‐Lys‐(Py)₄‐Lys‐Lys‐NH₂ (HypKK‐10) containing the XHypKK (Hyp = hydroxyproline) and polyamide motifs. The interconnection of DNA footprints of peptides HypKK‐10 and the parent peptide PyPro‐12 supports the proposal that interaction network cooperativity is preferred in DNA‐peptide interactions between multiple recognition sites. A simple method of determining interstrand bidentate interactions between the peptide moieties and DNA bases is introduced. It is envisaged that interstrand bidentate interactions also participate in the relay of conformational changes to recognition sites on the complementary strands. Circular dichroism studies of the titration of peptide HypKK‐10 with an oligonucleotide duplex indicate that this peptide binds in a dimeric fashion to DNA in the minor groove. This work may prompt the design of new DNA binding ligands for the study of DNA‐peptide allosteric interactions and DNA interaction network.