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1.
Homo/hetero ring‐expanded DNA analogs have been shown to be rationally modified DNA motifs with improved physical or biological properties. In this work, using density functional theory, the stability of these artificial DNA base pairs was examined with regard to three aspects associated with DNA damage, namely deprotonation, H‐abstraction, and H‐radical addition. The effect of size expansion on C8 activity was investigated because C8‐oxidative guanine (G) is one of the most important products of DNA damage. Computational results indicate that the insertion of an aromatic spacer ring in G considerably decreases the electron density over the C8 site, leading to easier deprotonation or H‐abstraction from the C8 site and more difficult H . ‐radical attack on the C8 site. However, the opposite phenomenon is observed if the spacer ring is antiaromatic, because of the increased electron density over the C8 site. Moreover, these effects are more prominent the larger the aromaticity or antiaromaticity of the spacer ring. Further analyses, using natural bond orbitals (NBOs) and the nucleus‐independent chemical shift (NICS) index of aromaticity, indicate that the changes of the electron distribution over the C8 site arise because the aromatic spacer ring, involved in the conjugation structure, increases the electron delocalization from the electron‐rich imidazole ring to the diatropic six‐membered rings, while the antiaromatic spacer ring acts as an electron‐donating group, not only inhibiting the above electron delocalization, but also slightly increasing the electron density over the C8 site. The improved stability of these size‐expanded base pairs in different DNA‐damaged environments may encourage their use in practical applications. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

2.
为了更好地区分测量小分子芳香烃,利用一台Nd∶YAG激光器提供能量为0.085 J·cm-2、波长为266 nm的入射光。针对苯、甲苯、萘、菲、蒽、芘和屈不同环数的芳香烃,使用激光诱导荧光法研究了单一芳香烃及不同芳香烃混合物的荧光光谱。结果表明,芳香烃的苯环数是荧光发射光谱的主要决定因素;相同苯环数不同结构的芳香烃对荧光光谱范围基本没有影响;由于266 nm波长的吸收效率差异,导致相同环数的芳香烃的荧光光强存在差异;而且吸收效率相近且浓度相同时,环数越大,荧光光强越强。随着芳香烃环数的增加,荧光光谱波段和峰值都出现从紫外波段向可见光波段红移的现象,同时吸收效率相近时,荧光光谱范围变宽;一环至四环芳香烃的较好的荧光光谱区分范围分别为275~320,320~375,375~425和425~556 nm。针对不同芳香烃混合物研究表明,由于辐射能量传递机制导致混合物中有3环或4环芳香烃存在时,紫外波段的光被损失,所以1环或2环芳香烃混入混合物后,混合物中的1环或2环荧光光谱不能被检测到,但荧光光谱强度增大;当混合物中只包含3环和4环芳香烃时,荧光发射光谱具有两种芳香烃的特点;当混合物中存在3环和4环芳香烃时,荧光发射光谱和各自的浓度相关,从而可以一定程度区分不同环数物质。  相似文献   

3.
A nanosecond time‐resolved resonance Raman (ns‐TR3) spectroscopic investigation of the intermolecular hydrogen‐abstraction reaction of the triplet state of 4‐benzoylpyridine (4‐BPy) in 2‐propanol solvent is reported. The TR3 results reveal a rapid hydrogen abstraction (<10 ns) by the 4‐BPy triplet state (nπ*) with the 2‐propanol solvent, leading to formation of a 4‐BPy ketyl radical and an associated dimethyl ketyl radical partner from the solvent. The recombination of these two radical species occurs with a time constant about 200 ns to produce a para‐N‐LAT (light absorbing transient). The structure, major spectral features, and identification of the ketyl radical and the para‐N‐LAT coupling complex have been determined and confirmed by comparison of the TR3 results with results from density functional theory (DFT) calculations. A reaction pathway for the photolysis of 4‐BPy in 2‐propanol deduced from the TR3 results is also presented. The electron‐withdrawing effect of the heterocyclic nitrogen for 4‐BPy on the triplet state makes it have a significantly higher chemical reactivity for the hydrogen abstraction with 2‐propanol compared to the previously reported corresponding benzophenone triplet reaction under similar reaction conditions. In addition, the 4‐BPy ketyl radical reacts with the dimethyl ketyl radical to attach at the para‐N atom position of the pyridine ring to form a cross‐coupling product such as 2‐[4‐(hydroxy‐phenyl‐methylene)‐4h‐pyridin‐1‐yl]‐propan‐2‐ol instead of attacking at the para‐C atom position as was observed for the corresponding benzophenone reaction reported in an earlier study. Copyright © 2008 John Wiley & Sons, Ltd.  相似文献   

4.
A reaction pathway is explored in which two cyclopenta groups combine on the zigzag edge of a graphene layer. The process is initiated by H addition to a five-membered ring, followed by opening of that ring and the formation of a six-membered ring adjacent to another five-membered ring. The elementary steps of the migration pathway are analyzed using density functional theory to examine the region of the potential energy surface associated with the pathway. The calculations are performed on a substrate modeled by the zigzag edge of tetracene. Based on the obtained energetics, the dynamics of the system are analyzed by solving the energy transfer master equations. The results indicate energetic and reaction-rate similarity between the cyclopenta combination and migration reactions. Also examined in the present study are desorption rates of migrating cyclopenta rings which are found to be comparable to cyclopenta ring migration.  相似文献   

5.
Ring strain energies (RSEs) have been calculated for oxygen‐containing spiro compounds using the group equivalent reaction (GER) formalism. The RSEs for all compounds studied were calculated from the energies of fully‐optimized structures at the MP2 + ZPE/cc‐pVDZ level and the more computationally costly G4(MP2) method. RSEs for selected compounds were also calculated with the CBS‐QB3 method, with less than 1 kcal/mol difference observed between G4(MP2) and CBS‐QB3. The difference between the less costly MP2 + ZPE and G4(MP2) methods was less than 1.5 kcal/mol. The highest RSEs were found for the compounds containing two three‐membered rings, and these compounds also exhibited the greatest excess strain energy (ESE) of about 12 kcal/mol. The RSEs of cyclic lactones vary with ring size differently than those of cyclic ethers. Cyclic ethers' RSEs decrease by a small amount from the three‐ to four‐membered rings then decrease drastically as the ring increases to 5 atoms, and approaches zero for the six‐membered ring, the same unexpected behavior as seen in cycloalkanes. Cyclic lactones' RSEs decrease linearly to almost zero from the three‐ to the five‐membered ring, then increase by 1–2 kcal/mol in the six‐membered ring. Lactone‐containing spiro compounds exhibit regularly diminishing ESE as the size of the lactone ring increases, down to about 3 kcal/mol in the δ‐lactone‐containing spiro compound. Substitution of methyl groups decreases RSE in these oxygen‐containing spiro compounds, while substitution of fluorine significantly increases RSE, as has been reported in other compounds. But RSE alone is shown to not correlate completely with chemical reactivity of these spiro compounds. Copyright © 2014 John Wiley & Sons, Ltd.  相似文献   

6.
This report examines the effect of substrate design upon the Truce‐Smiles rearrangement, an intramolecular nucleophilic aromatic substitution reaction. The length of the molecular spacer that tethers the carbanion nucleophile to the substituted benzene ring was found to have a strong influence on the ability of the substrate to undergo the reaction successfully. Our experimental results show highest yield of desired aryl migration product for substrates designed with a 3‐atom tether, which proceed through a 5‐membered spirocyclic intermediate. The results are interpreted in comparison with a survey of Truce‐Smiles rearrangements described in the literature and found to be consistent. Computational studies support the observed reactivity trend and suggest an explanation of a favorable combination of ring strain and electrostatic repulsion leading to optimal reactivity of the substrate designed with a 3‐atom tether. Comparison of our results with trends for related ring‐closing reactions illustrate the unique electrostatic features of the system studied herein.  相似文献   

7.
The alkylation reactions of 4‐(p‐nitrobenzyl)pyridine (NBP), a trap for alkylating agents with nucleophilic characteristics similar to DNA bases, by five N‐alkyl‐N‐nitrosoureas (methyl‐, ethyl‐, propyl‐, butyl‐, and allylnitrosourea) were investigated in 7:3 (v/v) water/dioxane medium in the 5.0–6.5 pH range. Decomposition of alkylnitrosoureas (ANU) gives rise to alkyldiazonium ions that yield NBP‐R adducts directly or through carbocations in certain instances. The NBP alkylation rate constants by these species were determined. The following sequence of alkylating potential was found: methyl‐ > ethyl‐ > allyl‐ > propyl‐ > butyl group. Application of Ingold–Taft correlation analysis to the kinetic results revealed that the NBP alkylation reactions occur mainly through steric control. The values of the molar absorption coefficients of the NBP‐R adducts also reveal the determinant influence of a steric effect in the formation of alkylation adducts. The kinetic results are consistent with the biological activity of ANU. Copyright © 2008 John Wiley & Sons, Ltd.  相似文献   

8.
Inter‐ and intramolecular hydrogen bonding play an important role in determining the arrangement, physical properties, and reactivity of a great diversity of structures in chemical and biological systems. Several aromatic nucleophilic substitutions (ANS) in nonpolar aprotic, (non‐HBD), solvents recently studied in our laboratory have demonstrated the importance of self‐association of amines by hydrogen‐bond interactions. In this paper, we describe 1H‐NMR studies carried out at room temperature on bi‐ and polyfunctionalized amines, namely: N‐(3‐amino‐1‐propyl)morpholine (3‐APMo), histamine, 2‐guanidinobenzimidazole (2‐GB), 1,2‐diaminoethane (EDA), 3‐dimethylamino‐l‐propylamine (DMPA), and 1‐(2‐aminoethyl)piperidine (2‐AEPip). By 1H‐NMR measurements of amine solutions at variable concentrations we have shown that 3‐APMo, histamine and 2‐GB are able to form a six‐membered ring by intramolecular hydrogen bonding, while EDA, DMPA, and 2‐AEPip form dimers by intermolecular hydrogen bonds. Likewise, variable concentration 1H‐NMR studies allowed estimation of the corresponding equilibrium constants for the dimerization. These results are correlated with experimental kinetic results of ANS, confirming hereto the relevance of the “dimer mechanism” in reactions involving these amines. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

9.
FT‐IR and FT‐Raman spectra of 4‐chloro‐2‐(3‐chlorophenylcarbamoyl) phenyl acetate were studied. Vibrational wavenumbers and corresponding vibrational assignments were examined theoretically using the Gaussian03 set of quantum chemistry codes and the normal modes are assigned by potential energy distribution (PED) calculations. Simultaneous IR and Raman activation of the CO stretching mode shows the charge transfer interaction through a π‐conjugated path. Optimized geometrical parameters of the title compound are in agreement with the reported values. Analysis of the phenyl ring modes shows that C C stretching mode is equally active as strong bands in both IR and Raman, which can be interpreted as the evidence of intramolecular charge transfer via conjugated ring path and is responsible for hyperpolarizability enhancement leading to nonlinear optical activity. The red‐shift of the NH‐stretching wavenumber in the infrared spectrum from the computed wavenumber indicates the weakening of the NH bond resulting in proton transfer to the neighboring oxygen atom. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

10.
The acyclic o‐oxygen benzyl carbocation 1 , the 6‐membered‐ring endocyclic o‐oxygen benzyl carbocation 2 , and the 5‐membered‐ring endocyclic o‐oxygen benzyl carbocation 3 were used as model compounds to get insights into the general phenomenon for the unusual stability of the 5‐membered‐ring endocyclic benzyl carbocations in aqueous solution. The hydride‐ion affinities of 1 , 2 , and 3 in gas phase, acetonitrile, and DMSO were calculated and compared by the density functional theory method, and 3 isodesmic reactions were designed to confirm their thermodynamic stability. What we found is that the 5‐membered‐ring endocyclic o‐oxygen stabilizes the benzyl carbocation 3 less than the acyclic o‐oxygen stabilizes the benzyl carbocation 1 in gas phase because of ring strain and through‐bond induction. However, the high solvation energies of the 5‐membered‐ring endocyclic o‐oxygen benzyl carbocation 3 not only offset the destabilizing effects of ring strain and through‐bond induction but also make it even more stable than the acyclic o‐oxygen benzyl carbocation 1 in polar solvents like acetonitrile, DMSO, and water.  相似文献   

11.
A surface‐enhanced Raman scattering (SERS) active substrate for the detection of polycyclic aromatic hydrocarbons (PAHs) was developed, which used 25, 27‐dimercaptoacetic acid‐26, 28‐dihydroxy‐4‐terbutyl calix[4]arene (DMCX) to functionalize a gold colloid film. This SERS‐active substrate prepared by self‐assembly method exhibits a high sensitivity, especially for the detection of PAHs. With the use of this SERS‐active substrate and with the application of the shifted excitation Raman difference spectroscopy (SERDS) technique, Raman signals of pyrene and anthracene in aqueous solutions at low concentration level (500 pM) can be obtained. Moreover, because PAHs are blocked from being directly adsorbed on gold colloid by DMCX and the photochemical reactions of adsorbates are avoided, the Raman bands of PAHs adsorbed on DMCX‐fuctionalized gold colloid film can be one‐to‐one correspondence with those of solid PAHs, and additionally, this SERS‐active substrate can be easily cleaned and reused. The obtained results demonstrate that the DMCX‐functionalized gold colloid films prepared by self‐assembly method have great potential to be developed to an in situ PAHs detection substrate. Copyright © 2012 John Wiley & Sons, Ltd.  相似文献   

12.
Photoinduced reactions of 9‐oxo‐6,9‐dihydro[1,2,5]selenadiazolo[3,4‐f]quinoline‐8‐carboxylic acid (SeQCA) were investigated in alkaline media (aqueous NaOH solutions) by electron paramagnetic resonance (EPR) spectroscopy, following the in situ formation of paramagnetic species. According to UV–Vis and nuclear magnetic resonance investigations, protonation (pH ≈ 11) and deprotonation (pH ≈ 13) of the imino hydrogen of the 4‐pyridone moiety has to be considered, reflected also in the different EPR spectra observed upon irradiation. Photoinduced generation of radicals was found only for carboxylate substituted SeQCA; other studied selenadiazoloquinolone derivatives, together with those substituted at the C(8) position (R = H, COOCH2CH3, COOCH3, COCH3 or CN), did not generate paramagnetic species during exposure. Consequently, photodecarboxylation was suggested as the decisive step, accompanied by the decomposition of the selenadiazole ring, resulting in the formation of ortho‐hydroxylate anions. EPR parameters elucidated from experimental EPR spectra obtained at pH ≈ 11 and pH ≈ 13 indicate the formation of oxygen‐centered radicals at the decarboxylated 4‐pyridone ring. EPR spin trapping experiments with nitromethane confirmed a very effective photoinduced electron transfer from all the selenadiazoloquinolones investigated. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

13.
Dinuclear (Zn2, Ni2, and NiZn) complexes of fused salphen with acene‐type annelation were synthesized from 3,7‐diformyl‐2,6‐dihydroxynaphthalene. The spectroscopic properties of these complexes were compared with those of their constitutional isomers with phene‐type annelation. The acene‐type complexes exhibited a characteristic absorption band in the near‐infrared region that showed a noticeable solvent effect. Time‐dependent density functional theory calculations suggested that the absorption arose from a π → π* transition localized at the naphthalene ring, which was perturbed by the adjoining chelate rings. Effects of the connection topology in the fused salphen complexes are discussed by comparison with those of polycyclic aromatic hydrocarbons.  相似文献   

14.
Experimental Raman and FT‐IR spectra of solid‐state non‐deuterated and N‐deuterated samples of cyclo(L ‐Met‐L ‐Met) are reported and discussed. The Raman and FT‐IR results show characteristic amide I vibrations (Raman: 1649 cm−1, infrared: 1675 cm−1) for molecules exhibiting a cis amide conformation. A Raman band, assigned to the cis amide II vibrational mode, is observed at ∼1493 cm−1 but no IR band is observed in this region. Cyclo(L ‐Met‐L ‐Met) crystallises in the triclinic space group P1 with one molecule per unit cell. The overall shape of the diketopiperazine (DKP) ring displays a (slightly distorted) boat conformation. The crystal packing employs two strong hydrogen bonds, which traverse the entire crystal via translational repeats. B3‐LYP/cc‐pVDZ calculations of the structure of the molecule predict a boat conformation for the DKP ring, in agreement with the experimentally determined X‐ray structure. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

15.
Manipulating circularly‐polarized (CP) waves in desired multi‐prescribed manners, especially in both transmission and reflection schemes, in a single flat device is of particular importance in photonic integration, imaging processing and communication systems. However, available approaches suffer from large thickness, low efficiencies as well as limited wavefront control spaces. Here, we propose a general strategy by using specially tailored Pancharatnam‐Berry (PB) meta‐atoms with helicity‐dependent transmissions and reflections to design high‐efficiency CP bifunctional metasurfaces. As a proof of the strategy, two metadevices are designed and characterized at microwave frequencies: the former one achieving focusing/diverging lenses at transmission/reflection side of the metasurface; the latter one realizing CP beam separation under illuminations of CP waves with different chirality, respectively. Both numerical and experimental results demonstrate the predicted EM functionalities, and all these functionalities exhibit very high efficiencies (88%~94%). Our findings afford a new route to design high‐performance CP bi‐functional metasurfaces operating in other frequency domains or with other functionalities.  相似文献   

16.
The hydrolysis of 2‐chloro‐3,5‐dinitropyridine by sodium hydroxide in the presence of micelles of cetyltrimethylammonium bromide (CTABr), cetyltrimethylammonium chloride (CTACl) and sodium dodecyl sulfate (SDS) has been studied. The reaction follows a consecutive reaction path involving the formation of a long‐lived intermediate 3 and finally giving the product, 3,5‐dinitro 2‐pyridone 2 . The mechanism follows an addition of the nucleophile, ring opening and ring closure (ANRORC) reaction path. The rate constant was observed to be first‐order dependent on [OH?]. The rate of reaction increased on increasing [CTABr] and, after reaching to the maxima, it started decreasing. The anionic SDS micelles inhibited the rate of hydrolysis. The results of the kinetic experiments were treated with the help of the pseudophase ion exchange model and the Menger–Portnoy model. The added salts, viz. NaBr, Na‐toluene‐4‐sulphonate, and (CH3)4NBr on varying [CTACl] and [SDS] inhibited the rate of reaction. The various kinetic parameters in the presence and absence of salts were determined and are reported herewith. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

17.
Nucleophilic substitution and dehydrochlorination reactions of a number of the ring‐substituted 1‐(arylsulfonyl)‐2‐R‐4‐chloro‐2‐butenes are studied both experimentally and theoretically. The developed synthetic procedures are characterized by a general rapidity, cheapness, and simplicity providing moderate to high yields of 1‐arylsulfonyl 1,3‐butadienes (48–95%), 1‐(arylsulfonyl)‐2‐R‐4‐(N,N‐dialkylamino)‐2‐butenes (31–53%), 1‐(arylsulfonyl)‐2‐R‐2‐buten‐4‐ols (37–61%), and bis[4‐(arylsulfonyl)‐3‐R‐but‐2‐enyl]sulfides (40–70%). The density functional theory B3LYP/6‐311++G(2d,2p) calculations of the intermediate allylic cations in acetone revealed their high stability occurring from a resonance stabilization and hyperconjugation by the SO2Ar group. The reactivity parameters estimated at the bond critical points of the diene/allylic moiety display a high correlation (R2 > 0.97) with the Hammett (σp) constants. 1‐Arylsulfonyl 1,3‐butadienes are characterized by a partly broken π conjugated system, which follows from analysis of the two‐centered delocalization (δ) and localization (λ) index values. The highest occupied molecular orbital energies of 1‐arylsulfonyl 1,3‐butadienes are lower than those of 1,3‐butadiene explaining their low reactivity towards the Diels–Alder condensation. Copyright © 2015 John Wiley & Sons, Ltd.  相似文献   

18.
Fourier transform infrared (FT‐IR) and FT‐Raman spectra of 4‐ethyl‐N‐(2′‐hydroxy‐5′‐nitrophenyl)benzamide were recorded and analyzed. A surface‐enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wavenumbers and corresponding vibrational assignments were examined theoretically using the Gaussian03 set of quantum chemistry codes. The red shift of the NH stretching wavenumber in the infrared spectrum from the computational wavenumber indicates the weakening of the NH bond resulting in proton transfer to the neighboring oxygen atom. The simultaneous IR and Raman activation of the CO stretching mode gives the charge transfer interaction through a π‐conjugated path. The presence of methyl modes in the SERS spectrum indicates the nearness of the methyl group to the metal surface, which affects the orientation and metal molecule interaction. The first hyperpolarizability and predicted infrared intensities are reported. The calculated first hyperpolarizability is comparable with the reported values of similar derivatives and is an attractive subject for future studies of nonlinear optics. Optimized geometrical parameters of the title compound are in agreement with reported structures. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

19.
Air‐tolerant 2,4‐bis(2,4,6‐tri‐t‐butylphenyl)‐1,3‐diphosphacyclobutane‐2,4‐diyl singlet biradicals can be prepared by utilizing the unique reactivity of a kinetically stabilized P≡C triple bond compound. In this procedure, we studied the spectroscopic properties of a fundamental unsymmetrical P‐heterocyclic biradical containing both PEt and PMe moieties, and the effects of the PCH2OMe group in relation to the stability of the P‐heterocyclic biradical skeleton. The experimentally observed nuclear magnetic resonance and photo‐absorption parameters of 1‐ethyl‐3‐methyl‐2,4‐bis(2,4,6‐tri‐t‐butylphenyl)‐1,3‐diphosphacyclobutane‐2,4‐diyl were discussed based on our previous findings and density functional theory calculations, suggesting particular structural characteristics of the P‐heterocyclic biradical skeleton and aromatic substituent effects on the sp2‐C atoms in the 4‐membered ring. Introduction of the methoxymethyl group in the P2C2 biradical moiety gave more stabilized 1,3‐diphosphacyclobutane‐2,4‐diyl derivatives. In comparison with considerably unstable biradicals bearing propargyl substituents, relatively higher lowest unoccupied molecular orbital energies suggest reluctant oxidation of the P‐heterocyclic skeleton. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

20.
The application of a two‐dimensional photon‐counting detector based on a micro‐pixel gas chamber (µ‐PIC) to high‐resolution small‐angle X‐ray scattering (SAXS), and its performance, are reported. The µ‐PIC is a micro‐pattern gaseous detector fabricated by printed circuit board technology. This article describes the performance of the µ‐PIC in SAXS experiments at SPring‐8. A dynamic range of >105 was obtained for X‐ray scattering from a polystyrene sphere solution. A maximum counting rate of up to 5 MHz was observed with good linearity and without saturation. For a diffraction pattern of collagen, weak peaks were observed in the high‐angle region in one accumulation of photons.  相似文献   

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