Unusual conformational preferences of 1,3‐dimethyl‐3‐isopropoxy‐3‐silapiperidine

The conformational analysis of the first representative of the Si‐alkoxy substituted six‐membered Si,N‐heterocycles, 1,3‐dimethyl‐3‐isopropoxy‐3‐silapiperidine, was performed by low‐temperature ¹H and ¹³C NMR spectroscopy and DFT theoretical calculations. In contrast to the expectations from the conformational energies of methyl and alkoxy substituents, the Me_axi‐PrO_eq conformer was found to predominate in the conformational equilibrium in the ratio Me_axi‐PrO_eq : Me_eqi‐PrO_ax of ca. 2 : 1 as from the ¹H and ¹³C NMR study. The thermodynamic parameters obtained by the complete line shape analysis showed that the main contribution to the barrier to ring inversion originates from the entropy term of the free energy of activation. Copyright © 2012 John Wiley & Sons, Ltd.     

Conformational analysis and inversion process in some perhydrodipyrido[1,2‐b;1′2′‐e]‐1,4,2,5‐ dioxadiazines

The stereoselectivity in the cyclodimerization of several six‐membered cyclic nitrones has been investigated. The configurational/conformational analysis of the dimers (i.e. perhydrodipyrido[1,2‐b;1′2′‐e]‐1,4,2,5‐dioxadiazines) has been carried out by NMR spectroscopy. The NMR spectra of the dimers at lower temperatures indicated the presence of either a single or two invertomer(s). The nitrogen inversion barriers are determined using complete line–shape analysis. The invertomer ratios have been used to estimate the relative energies associated with the cis and trans ring fusion in these tricycles. A mechanistic rationale for the observed stereochemistry of the dimerization process has been presented. Copyright © 2009 John Wiley & Sons, Ltd.     

Evaluation of various DFT protocols for computing 1H and 13C chemical shifts to distinguish stereoisomers: diastereomeric 2‐, 3‐, and 4‐methylcyclohexanols as a test set

¹H and ¹³C NMR chemical shifts were measured for a set of six isomers—the cis and trans 2‐, 3‐, and 4‐methylcyclohexanols. ¹H and ¹³C NMR chemical shifts were computed at the B3LYP, WP04, WC04, and PBE1 density functional levels for the same compounds, taking into account the Boltzmann distribution among conformational isomers (chair–chair forms and hydroxyl rotamers). The experimental versus computed chemical shift values for proton and carbon were compared and evaluated (using linear correlation (r²), total absolute error (|Δδ|_T), and mean unsigned error (MUE) criteria) with respect to the relative ability of each method to distinguish between cis and trans stereoisomers for each of the three constitutional isomers. For ¹³C shift data, results from the B3LYP and PBE1 density functionals were not sufficiently accurate to distinguish all three pairs of stereoisomers, while results using the WC04 functional did do so. For ¹H shift data, each of the WP04, B3LYP, and PBE1 methods was sufficiently accurate to make the proper stereochemical distinction for each of the three pairs. Applying a linear correction to the computed data improved both the absolute accuracy and the degree of discrimination for most of the methods. The nature of the cavity definition used for continuum solvation had little effect. Overall, use of proton chemical shift data was more discriminating than use of carbon data. Copyright © 2007 John Wiley & Sons, Ltd.     

Structural and vibrational study of 2‐(2′‐ furyl)‐4,5‐1H‐dihydroimidazole

In this study 2‐(2′‐furyl)‐4,5‐1H‐dihydroimidazole (1) was prepared and then characterized by infrared, Raman, and multidimensional nuclear magnetic resonance (NMR) spectroscopies. The crystal and molecular structures of 1 were determined by X‐ray diffraction methods. The density functional theory (DFT) and second‐order Møller–Plesset theory (MP2) with Pople's basis set show that there are two conformers for the title molecule that have been theoretically determined in the gas phase, and that only one of them, conformer I, is present in the solid phase. NMR spectra observed for 1 were successfully compared with the calculated chemical shifts at the B3LYP/6‐311++G** level theorized for this conformer. The harmonic vibrational frequencies for the optimized geometry of the latter conformer were calculated at the B3LYP/6‐311++G** level in the approximation of the isolated molecule. For a complete assignment of the IR and Raman spectra in the solid phase of 1 , DFT calculations were combined with Pulay´s scaled quantum mechanics force field (SQMFF) methodology to fit the theoretical frequency values to the experimental ones. Copyright © 2009 John Wiley & Sons, Ltd.     

Computational studies of the effects of ortho‐ring and para‐ring activation on the kinetics of SNAr reactions of 1‐chloro‐2‐nitrobenzene and 1‐phenoxy‐2‐nitrobenzene with aniline

Computational studies are reported for reactions of 4‐substituted‐1‐chloro‐2,6‐dinitrobenzenes 1 , 6‐substituted‐1‐chloro‐2,4‐dinitrobenzenes 2 and some of the corresponding 1‐phenoxy derivatives 3 and 4 with aniline in the gas phase. The effects of substituent groups in the calculated energy values for reactants 1–4 , transition states structures, intermediates and products formed in the reactions between the compounds and anilines have been compared. Calculated bonds length and angles from optimized structures of the reactants were comparable with values reported for some of compounds 1–4 obtained by X‐ray crystal structures analysis. Generally, the decomposition of the Meisenheimer intermediate to the products requires more energy compared with the reactants except for when R = H. The order of stabilization of the intermediate was found to reflect the relative order of activation by substituents in the substrates. The 4‐substituted‐1‐chloro‐2,6‐dinitrobenzenes 1 and the phenoxy derivatives 3 were found to be more stable than their corresponding 6‐substituted analogues. This is an indication that the rate of nucleophilic attack at 1‐position will increase with increasing ring activation but may be reduced by steric repulsion at the reaction centre that increases in the order Cl < OPh. However, the steric hindrance to the steps involved in nucleophilic substitution by aniline is significantly increased when the substrates contain two ortho‐substituents. In most cases, the rate determining step is the decomposition of the σ‐adduct intermediate except with 1‐chloro‐2,6‐dinitrobenzenes 1 and 6‐substituted‐1‐chloro‐2,4‐dinitrobenzenes 2 , either because of reduction in ring activation or the presence of bulky ortho‐substituents in the chloro compounds 1 and 2 . Copyright © 2014 John Wiley & Sons, Ltd.     

Conformational analysis of 3,3‐dimethyl‐3‐silathiane, 2,3,3‐trimethyl‐3‐silathiane and 2‐trimethylsilyl‐3,3‐dimethyl‐3‐silathiane—preferred conformers,barriers to ring inversion and substituent effects

The first conformational analysis of 3‐silathiane and its C‐substituted derivatives, namely, 3,3‐dimethyl‐3‐silathiane 1 , 2,3,3‐trimethyl‐3‐silathiane 2 , and 2‐trimethylsilyl‐3,3‐dimethyl‐3‐silathiane 3 was performed by using dynamic NMR spectroscopy and B3LYP/6‐311G(d,p) quantum chemical calculations. From coalescence temperatures, ring inversion barriers ΔG^≠ for 1 and 2 were estimated to be 6.3 and 6.8 kcal/mol, respectively. These values are considerably lower than that of thiacyclohexane (9.4 kcal/mol) but slightly higher than the one of 1,1‐dimethylsilacyclohexane (5.5 kcal/mol). The conformational free energy for the methyl group in 2 (?ΔG° = 0.35 kcal/mol) derived from low‐temperature ¹³C NMR data is fairly consistent with the calculated value. For compound 2 , theoretical calculations give ΔE value close to zero for the equilibrium between the 2 ‐Me_ax and 2 ‐Me_eq conformers. The calculated equatorial preference of the trimethylsilyl group in 3 is much more pronounced (?ΔG° = 1.8 kcal/mol) and the predominance of the 3 ‐SiMe_{3 eq} conformer at room temperature was confirmed by the simulated ¹H NMR and 2D NOESY spectra. The effect of the 2‐substituent on the structural parameters of 2 and 3 is discussed. Copyright © 2010 John Wiley & Sons, Ltd.     

Conformational analysis of 4,4‐dimethyl‐1‐(trifluoromethylsulfonyl)‐1,4‐azasilinane and 2,2,6,6‐tetramethyl‐4‐(trifluoromethylsulfonyl)‐1,4,2,6‐oxazadisilinane

4,4‐Dimethyl‐1‐(trifluoromethylsulfonyl)‐1,4‐azasilinane 1 and 2,2,6,6‐tetramethyl‐4‐(trifluoromethylsulfonyl)‐1,4,2,6‐oxazadisilinane 2 were studied by variable temperature dynamic ¹H, ¹³C, ¹⁹F NMR spectroscopy and theoretical calculations at the DFT (density functional theory) and MP2 (Møller‐Plesset 2) levels of theory. Both kinetic (barriers to ring inversion) and thermodynamic data (frozen conformational equilibria) could be obtained for the two compounds. The computations revealed two minima on the potential energy surface for molecules 1 and 2 corresponding to the rotamers with the CF₃SO₂ group directed ‘inward’ and ‘outward’ the ring, the latter being 0.2–0.4 kcal/mol (for 1 ) and 1.1 kcal/mol (for 2 ) more stable than the former. The vibrational calculations at the DFT and MP2 levels of theory give the values of the free energy difference ΔG^o for the ‘inward’ ‘outward’ equilibrium consistent with those determined from the experimentally measured ratio of the rotamers. The structure of crystalline compound 2 was ascertained by X‐ray diffraction analysis. Copyright © 2011 John Wiley & Sons, Ltd.     

Unexpected dimerization of 1,3‐dimethyl‐5‐methylenebarbituric acid revealed by a combined experimental and computational study

A comparison of experimental and calculated ¹³C‐nuclear magnetic resonance chemical shifts reveals the molecular structure of a dimer that was obtained by an unexpected dimerization of 1,3‐dimethyl‐5‐methylenebarbituric acid. Furthermore, the puckering angle of the cyclobutane unit linking the six‐membered rings is discussed in detail. The influence of substituents on 1,3‐position of the cyclobutane ring on the puckering angle is demonstrated based on 1,1,3,3‐tetramethylcyclobutane. Copyright © 2015 John Wiley & Sons, Ltd.     

Conformational analysis of N‐phenyl‐ and N‐trifyl‐4,4‐dimethyl‐4‐silathiane 1‐sulfimides

N‐Substituted 4,4‐dimethyl‐4‐silathiane 1‐sulfimides [R = Ph ( 1 ), CF₃ ( 2 )] were studied experimentally by variable temperature dynamic NMR spectroscopy. Low temperature ¹³C NMR spectra of the two compounds revealed the frozen ring inversion process and approximately equal content of the axial and equatorial conformers. Calculations of the 4‐silathiane derivatives 1 , 2 and the model compound [R = Me ( 3 )] as well as their carbon analogs, the similarly N‐substituted thiane 1‐sulfimides [R = Ph ( 4 ), CF₃ ( 5 ), Me ( 6 )] at the DFT/B3LYP/6–311G(d,p) level in the gas phase and in chloroform solution using the PCM model at the same level of theory showed a strong dependence of the relative stability of the conformer on the solvent. The electronegative trifluoromethyl group increases the relative stability of the axial conformer. Copyright © 2010 John Wiley & Sons, Ltd.     

1H NMR study of through‐bond and through‐space effects in the hetero‐association of pyridine with alkane diols

The ¹H NMR titration method is used to investigate through‐space and through‐bond effects on the association of diols with pyridine in benzene. Alkan‐1,n‐diols (n goes from 2 to 10), DL and meso isomers of butan‐2,3‐, pentan‐2,4‐ and hexan‐2,5‐diols, two adamantane diols and a bicyclo[2.2.2]octane diol are compared with alkanols. The –CH₂OH groups of the tri‐ and bicyclic compounds behave as if they were independent, with limiting OH proton shifts (at very low concentration) and both the first and the second association constants similar to those of a primary alcohol. In contrast, the alkane diols, with n = 2–4, display unusually high limiting shifts, ranging from 1.0 to 1.5 ppm (2.1 ppm for one methyl‐substituted diol). For these diols the first dissociation constant and the sum of the OH proton shifts in the 1:1 pyridine: diol complex are enhanced. This may be attributed to small cooperative effects, implying intramolecular hydrogen bonding, for n = 3 and 4, but for n = 2 a through‐bond effect accounts for most of the increase. Substituent interaction falls off sharply for n = 5 and is practically negligible for n = 10, for which the second association constant is close to the first. A sterically hindered BiEDOT diol, 2,2′‐bis{(3,4‐ethylenedioxythienyl)‐5‐[3‐(2,2,4,4‐tetramethylpentan‐3‐ol)]} behaves like the polycyclic compounds, with the two ? C(t‐Bu)₂OH groups independent. Copyright © 2010 John Wiley & Sons, Ltd.     

Pressure effects on structural,electronic, absorption,and thermodynamic properties of crystalline 2,4,6‐triamino‐3,5‐dinitropyridine‐1‐oxide: A DFT study

Density functional theory calculations have been performed to study the structural, electronic, absorption, and thermodynamic properties of crystalline 2,4,6‐triamino‐3,5‐dinitropyridine‐1‐oxide (TANPyo) in the pressure range of 0–50 GPa. The variation trends of the lattice constants, bond lengths, bond angles, intramolecular H‐bonds, and dihedral angles under compression show that there are two structural transformations at 17 and 38 GPa, respectively. The remarkable changes in the bond lengths indicate that there are two possible initiation decomposition mechanisms of TANPyo under compression. As the pressure increases, the intramolecular H‐bond strengthens. The obvious changes of the dihedral angles show that the planar structure of the TANPyo molecule is damaged under compression. Its absorption spectra show that as the pressure increases, the absorption coefficient of the N–H stretching decreases, while that of the O–H stretching increases. TANPyo has relatively high optical activity at high pressure. An analysis of thermodynamic properties indicates that both two structural transformations are endothermic and not spontaneous at room temperature. Copyright © 2013 John Wiley & Sons, Ltd.     

Nitrosonium complexes of 2,11‐dithia‐5,6,8,9‐tetramethyl[32](1,4)cyclophane: a combined experimental and theoretical study

¹H and ¹³C NMR studies and quantum chemical calculations show the interaction between 2,11‐dithia‐5,6,8,9‐tetramethyl[3₂](1,4)cyclophane and nitrosonium cation to result in the formation of π‐ and n‐complexes. According to DFT/B3LYP/6‐31G(2d,p) calculations, formation of nitrosonium complexes is a strongly exothermic process both in gas phase and in SO₂. Affinity of single‐charged complexes to NO⁺ is usually larger than that of double‐charged and triple‐charged complexes, affinity of all the charged complexes to nitrosonium cation in SO₂ being larger than that in gas phase. The π‐complex with nitrosonium cation coordinated to the methylated aromatic ring is the most stable with structural characteristics being close to those obtained by X‐ray diffraction for nitrosonium π‐complexes of hexamethylbenzene and other arenes. The N―O bond lengths in all the complexes are quite close to each other and larger than that in NO⁺ cation. The S―N bond length increases upon transition from single‐charged to double‐charged and polycharged complexes. Copyright © 2014 John Wiley & Sons, Ltd.     

DFT,FT‐Raman,FT‐IR and NMR studies of 2‐fluorophenylboronic acid

The experimental and theoretical vibrational spectra of 2‐fluorophenylboronic acid (2fpba) were studied. The Fourier transform Raman and Fourier transform infrared spectra of the 2fpba molecule were recorded in the solid phase. The structural and spectroscopic analysis of the molecule was carried out by using Hartree‐Fock and density functional harmonic calculations. For the title molecule, only one form was found to be the most stable structure, by using B3LYP level with the 6‐31++G(d,p) basis set. Selected experimental bands were assigned and characterized on the basis of the scaled theoretical wavenumbers by their total energy distribution (TED). The ¹H and ¹³C nuclear magnetic resonance (NMR) chemical shifts of the 2fpba molecule were calculated using the Gauge‐Invariant‐ atomic orbital (GIAO) method in DMSO solution using IEF‐PCM model and compared with the experimental data. Finally, geometric parameters, vibrational wavenumbers and chemical shifts were compared with available experimental data of the molecule. Copyright © 2009 John Wiley & Sons, Ltd.     

Structure and NMR properties of 6‐substituted‐5,6‐dihydrobenzo[c]phenanthridine alkaloids

We report a preparation of new 6‐substituted‐5,6‐dihydrobenzo[c]phenanthridines by the reaction of azoles with quaternary benzo[c]phenanthridine alkaloids sanguinarine and chelerythrine. The prepared compounds have been characterized by NMR spectroscopy, mass spectrometry, and single‐crystal X‐ray diffraction. Conformational behaviors of carbazole derivatives in solution have been investigated by low‐temperature NMR experiments. Barriers to rotation around newly formed C6–N bonds were determined to be 12–13 kcal/mol. Quantum chemical calculations have been used to reproduce the experimental observations. Large structural effects on several ¹H NMR resonances were observed experimentally, analyzed by Density Functional Theory (DFT) calculations at B3LYP/6‐311+G(d,p)/PCM level, and interpreted by ring‐current effects of the benzo[c]phenanthridine and carbazole units. Copyright © 2013 John Wiley & Sons, Ltd.     

Acid assisted proton transfer in 4‐[(4‐R‐phenylimino)methyl]pyridin‐3‐ols: NMR spectroscopy in solution and solid state,X‐ray and UV studies and DFT calculations

The behaviour of Schiff bases of 3‐hydroxy‐4‐pyridincarboxaldehyde and 4‐R‐anilines (R?H, CH₃, OCH₃, Br, Cl, NO₂) in acid media has been described. ¹H, ¹³C, ¹⁵N‐NMR chemical shifts allow to establish the protonation site and its influence on the hydroxyimino/oxoenamino tautomerism. DFT calculations, electronic spectra and X‐ray diffraction are in agreement with the NMR conclusions. Copyright © 2007 John Wiley & Sons, Ltd.     

An experimental investigation of substituent effects on the formation of 2,3‐dihydroquinazolin‐4(1H)‐ones: a kinetic study

The effect of different substituents on the kinetics of the reactions between 2‐amino‐benzamide and some of benzaldehyde derivatives have been spectrally investigated in the presence of formic acid. The proposed mechanism were challenged due to the determination of rate‐determining step (RDS) and also, to obtain the general rate law of the reaction. For all substituents, the reactions followed the second‐order kinetics and the partial orders of reactions were recognized with respect to each reactant. Electron withdrawing substituents on benzaldehyde ring increased the rate of reaction. Kinetic values (k and E_a) and associated activation parameters (ΔH^?, ΔG^? and ΔS^?) of the reactions were determined. Both the Arrhenius and the Eyring equations were used to calculate activation energy. Comparison of magnitude of and T showed that the reactions were enthalpy controlled. Isokinetic plots for the reactions were plotted and linear relationship between and recognized that relative contribution of enthalpy and entropy to the overall free energy was the same in the reactions.     

Solvatochromic properties of long alkyl chain π* indicators: comparison of N,N‐dialkyl‐4‐nitroanilines and alkyl 4‐nitrophenyl ethers

Hydrophobic forms of the N,N‐dialkyl‐4‐nitroaniline (DNAP) (p‐O₂NC₆H₄NR₂) ( 1a–f ) and alkyl‐4‐nitrophenyl ether (p‐O₂NC₆H₄OR) ( 2a–c ) solvatochromic π* indicators have been characterized and compared with respect to: (a) solvatochromic bandshape, (b) sensitivity expressed as ?s , ( / d π * ), and (c) trends in ? s with increasing length of alkyl chain(s) on the probe molecule. ? Octyl 4‐nitrophenyl ether (p‐O₂NC₆H₄OC₈H₁₇) ( 2b ) and ? decyl 4‐nitrophenyl ether (p‐O₂N C₆H₄ OC₁₀H₂₁) ( 2c ) were synthesized and their solvatochromic UV/Vis absorption bands were found to maintain a Gausso‐Lorentzian bandshape for the indicators in non‐polar and alkyl substituted aromatic solvents, for example, hexane(s) and mesitylene. Corresponding absorption bands for 1a–f display increasing deviation from a Gausso‐Lorentzian shape in the same solvents as the alkyl chains on the indicator are increased in length all the way to C₁₀ and C₁₂, for example, N,N‐didecyl‐4‐nitroaniline (p‐O₂NC₆H₄N (C₁₀H₂₁)₂) and N,N‐didodecyl‐4‐nitroaniline (p‐O₂NC₆H₄N (C₁₂H₂₅)₂) ( 1d–f ). A plot of ? s versus C_n follows a 1st order decay for the DNAP indicators but is linear for the alkyl 4‐nitrophenyl ethers. A discussion of how the long alkyl chains on the two types of indicators affect the orientation and overlap of n and π * orbitals, and resulting solvatochromic bands is presented. For DNAP, overextending the alkyl chains to obtain greater hydrophobic character may cause the alkane component to dominate solute‐solvation processes at the expense of the probe's fundamental solvatochromic character. Copyright © 2007 John Wiley & Sons, Ltd.     

Molecular structure,experimental and theoretical 1H and 13C NMR chemical shift assignment of cyclic and acyclic α,β‐unsaturated esters

The experimental ¹H and ¹³C NMR spectra of 13 phenyl cinnamates and four 4‐methylcoumarins were investigated and their chemical shifts assigned on the basis of the two‐dimensional spectra. For the unsubstituted cinnamic acid phenyl ester, optimized molecular structures were calculated at a B3LYP/6‐311++G(d,p) level of theory. ¹H and ¹³C NMR chemical shifts were also calculated with the GIAO method at the B3LYP/6‐311 + G(2d,p) level of theory. The comparison between experimental and calculated NMR chemical shift suggests that the experimental spectra are formed from the superposition spectra of the two lowest energy conformers of the compound in solution. The most stable s‐cis configuration found in our studies is also the conformation adopted for a related phenyl cinnamate in solid state. The experimental results were analyzed in terms of the substituent effects. Copyright © 2013 John Wiley & Sons, Ltd.     

5‐Fluorouracil solutions: NMR study of acid–base equilibrium in water and DMSO

A comprehensive analysis of solutions of 5‐fluorouracil (5FU) in water and an organic medium (dimethylsulfoxide, DMSO) was carried out using quantum chemical methods and nuclear magnetic resonance (NMR) spectroscopy. The details of anionic form generation in the solution of 5FU with an equimolar amount of potassium hydroxide were studied by ¹³С, ¹Н, ¹⁵N and ¹⁹F NMR. Interpretation of NMR spectral data was carried out using quantum chemical calculations at the TPSSTPSS/6‐311+G(d,p) level of theory. Specific solvation of 5FU and 1THF‐5FU was modeled in approximation using the five‐water cluster model and solvate complex including two DMSO molecules. It was established that in an alkaline medium in DMSO 5FU occurred mainly as a type of an anion with a deprotonation on N(1) position of a pyrimidine ring whereas in water alkaline solution—as a mixture of two anions with a deprotonation on N(1) and N(3) positions with a predominant content of the latter form. For the quantitative definition of the deprotonation forms of 5FU the technique based on the data of theoretical and experimental NMR ¹³C spectroscopy, tested on a model compound 1‐(tetrahydrofuranyl‐2)‐5‐fluoro‐pyrimidinedione‐2,4 (tegafur, THF‐5FU), was offered. The N(3) anion was found from spectral data to be more thermodynamically stable than the N(1) anion by 2.40 kJ mol^?1 (calculated value 2.24 kJ mol^?1) in an alkaline–water solution. Both alkaline–water and alkaline–DMSO solutions of THF‐5FU (THF‐5FU/KOH = 1/1) were characterized by the ratio of the equilibrium concentrations of the anion and diketo‐tautomer as 9:1 and 4.3:1, respectively. Copyright © 2014 John Wiley & Sons, Ltd.     

FT‐IR,FT‐Raman and DFT calculations of 3‐{[(4‐fluorophenyl)methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one

Fourier transform (FT)‐Raman and Fourier transform infrared (FT‐IR) spectra of 3‐{[(4‐fluorophenyl)methylene]amino}‐2‐phenylquinazolin‐4(3H)‐one were recorded and analyzed. The vibrational wavenumbers of the title compound were computed using the B3LYP/6‐31G* basis and compared with the experimental data. The prepared compound was identified by NMR and mass spectra. The simultaneous IR and Raman activation of the CO stretching mode shows a charge transfer interaction through a π‐conjugated path. The first hyperpolarizability and infrared intensities are reported. The assignments of the normal modes are done by potential energy distribution (PED) calculations. Copyright © 2008 John Wiley & Sons, Ltd.