Density functional study of hydrogen‐bonded acetonitrile–water complex

We report the interaction of acetonitrile with one, two, and three water molecules using the Density Functional Theory method and the 6‐31+G* basis set. Different conformers were studied and the most stable conformer of acetonitrile–(water)_n complex has total energies –209.1922504, –285.6224478, and –362.068728 hartrees with one, two, and three water molecules, respectively. The corresponding binding energy for these three structures is 4.52, 8.34, and 22.48 kcal/mol. The hydrogen‐bonding results in blue, blue, and redshift in C?N stretching mode in acetonitrile with one, two, and three water molecules, respectively, whereas there was a redshift in O? H symmetric stretching mode of water. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

4-羟甲基吡啶－水红移氢键的密度泛函理论研究

使用密度泛函理论B3LYP方法和6-311++G**基函数对4-羟甲基吡啶与水形成的1:1和1:2（摩尔比）氢键复合物进行了理论计算研究,分别得到稳定的4-羟甲基吡啶－H₂O和4-羟甲基吡啶－(H₂O)₂氢键复合物3个和8个。经基组重叠误差和零点振动能校正后,最稳定的1:1和1:2氢键复合物的相互作用能分别为-20.536和-44.246 kJ/mol。振动分析显示O-H···N(O)氢键的形成使复合物中O-H键对称伸缩振动频率红移(减小)。自然键轨道分析表明,4-羟甲基吡啶与水形成最稳定的1:1和1:2氢键复合物时,分子间电荷转移分别为0.02642 e 和0.03813 e 。含时密度泛函理论TD-B3LYP/ 6-311++G**计算显示,相对于4-羟甲基吡啶单体分子,氢键H-OH···N和H-OH···OH的形成分别使最大吸收光谱波长兰移8~16纳米和红移4~11纳米。     

Hydrogen bond of radicals: Interaction of HNO with HCO,HNO, and HOO

Ab initio quantum mechanics methods are employed to investigate hydrogen bonding interactions between HNO and HCO, HOO radicals, and closed‐shell HNO. The systems were calculated at MP2/6‐311++G (2d, 2p) level and G2MP2 level. The topological and NBO analysis were investigated the origin of hydrogen bonds red‐ or blue‐shifts. In addition, the comparisons were performed between HNO‐opened‐shell radical (HCO, HOO) complexes and HNO‐corresponding closed‐shell molecule (H₂CO, HOOH) complexes. It is found that the stabilities of complexes increase from HNO‐HCO to HNO‐HOO. There are blue‐shifts of N? H, C? H stretching vibrational frequencies and a red‐shift of O? H stretching vibrational frequency in the complexes. Rehybridization and electron density redistribution contribute to the blue‐shifts of C? H and N? H stretching vibrational frequencies. Compared with the closed‐shell H₂CO, HCO is weaker proton donor and weaker proton acceptor. For the HOO, it is stronger proton donor and weaker proton acceptor than the HOOH is. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

DFT Study of Hydrogen-Bonded 1,3,5-Triazine-Water Complexes

The 1,3,5-triazine-water hydrogen bonding interactions have been investigated using the density functional theory B3LYP method and 6-31 ＋＋G^＊＊ basis, obtaining one, two and seven energy minima of the ground states for the 1,3,5-triazine-water, 1,3,5-triazine-（water）2 and 1,3,5-triazine-（water）3 complexes respectively. The fully optimized geometries and binding energies were reported for the various stationary points. The global minima of 1,3,5-triazine-（water）2 and 1,3,5-triazine-（water）3 complexes have a hydrogen bond N…H-O and a chain of water molecules, terminated by a hydrogen bond O…H-C. The binding energies are 13.38, 39.52 and 67.79 kJ/mol for the most stable 1,3,5-triazine-water, 1,3,5-triazine-（water）2 and 1,3,5-triazine-（water）3 complexes respectively, after the basis set superposition error and zero point energy corrections. The H-O symmetric stretching modes of water in the complexes are red-shifted relative to those of the monomer water. In addition, the NBO analysis indicates that inter-molecule charge transfer is 0.02145 e, 0.02501 e and 0.02777 e for the most stable 1 ： 1, 1 ： 2 and 1 ： 3 complexes between 1,3,5-triazine and water, respectively.     

Concentration‐Dependent Hydrogen‐Bonding Effects on the Dimethyl Sulfoxide Vibrational Structure in the Presence of Water,Methanol, and Ethanol

The effects of hydrogen bonding between dimethyl sulfoxide (DMSO) and the co‐solvents water, methanol, and ethanol on the symmetric and antisymmetric CSC stretching vibrations of DMSO are investigated by means of Raman spectroscopy. The Raman spectra are recorded as a function of co‐solvent concentration and reflect changes in structure and polarizability as well as hydrogen‐bond donor and acceptor ability. In all cases studied a nonideal mixing behavior is observed. The spectra of the DMSO/water system show blue‐shifted CSC stretching modes. The antisymmetric frequencies are always further blue‐shifted than the symmetric stretching ones. The DMSO/methanol system also features blue‐shifted CSC stretching frequencies but at high mole fractions a pronounced red shifting is observed. In the binary DMSO/ethanol system, the co‐solvent also gives rise to blue shifts of the CSC stretching frequencies but restricted to mole fractions between x=0.38 and 0.45. The different magnitudes and occurrences of both blue‐ and red‐shifted spectral lines are comprehensively and critically discussed with respect to the existing literature concerning wavenumbers and Raman intensities in both absolute and normalized values. In particular, the normalized Raman intensities show a higher sensitivity for the nonideal mixing behavior because they are independent of the mole fraction.     

Intramolecular hydrogen bond in the hydroxycyclohexadienyl peroxy radicals

The hydroxycyclohexadienyl peroxy radicals (HO? C₆H₆? O₂) produced from the reaction of OH‐benzene adduct with O₂ were studied with density functional theory (DFT) calculations to determine their characteristics. The optimized geometries, vibrational frequencies, and total energies of 2‐hydroxycyclohexadienyl peroxy radical II_s and 4‐hydroxycyclohexadienyl peroxy radical III_s were calculated at the following theoretical levels, B3LYP/6‐31G(d), B3LYP/6‐311G(d,p), and B3LYP/6‐311+G(d,p). Both were shown to contain a red‐shifted intramolecular hydrogen bond (O? H … O? H bond). According to atoms‐in‐molecules (AIM) analysis, the intramolecular hydrogen bond in the 2‐hydroxycyclohexadienyl peroxy radical II_s is stronger than that one in 4‐hydroxycyclohexadienyl peroxy radical III_s, and the former is the most stable conformation among its isomers. Generally speaking, hydrogen bonding in these radicals plays an important role to make them more stable. Based on natural bond orbital (NBO) analysis, the stabilization energy between orbitals is the main factor to produce red‐shifted intramolecular hydrogen bond within these peroxy radicals. The hyperconjugative interactions can promote the transfer of some electron density to the O? H antibonding orbital, while the increased electron density in the O? H antibonding orbital leads to the elongation of the O? H bond and the red shift of the O? H stretching frequency. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Conformational behavior of nylon 6 in mixed solvents

The intrinsic viscosity [η], Huggins constant (K_H), laser light scattering, UV and IR measurements of Nylon 6 are made in m‐cresol and its mixture with 1,4‐dioxane at 20–60 °C. The intrinsic viscosity, R_g, A₂, (<S>²)^1/2 (calculated from viscosity data), R_H, and UV absorbance initially increase and then decrease with the rise in 1,4‐dioxane contents. The K_H and the transmittance of ? OH group in IR spectra show an opposite trend to that of [η]. The dielectric constant calculated from the refractive index of the solvent (m‐cresol with 1,4‐dioxane) and polymer solution shows a continuous decrease with the amount of 1,4‐dioxane. Activation energy shows a minimum while linear expansion coefficient (α³) maximum with the addition of 1,4‐dioxane. Change in [η], K_H, and other characteristics of the polymer solutions with alterations in solvent composition and temperature are the result of variation in the thermodynamic quality of the solvent, its selective adsorption, hydrogen bonding, and conformational transitions. It has been concluded that the addition of 1,4‐dioxane first enhances the quality of the solvent, encourages hydrogen bonding, and specific adsorption, and then deteriorates, bringing conformational transitions in the polymer molecules. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 534–541, 2005     

Blue‐shifted and red‐shifted hydrogen bonds: Theoretical study of the CH3CHO· · ·HNO complexes

The blue‐shifted and red‐shifted H‐bonds have been studied in complexes CH₃CHO…HNO. At the MP2/6‐31G(d), MP2/6‐31+G(d,p) MP2/6‐311++G(d,p), B3LYP/6‐31G(d), B3LYP/6‐31+G(d,p) and B3LYP/6‐311++G(d,p) levels, the geometric structures and vibrational frequencies of complexes CH₃CHO…HNO are calculated by both standard and CP‐corrected methods, respectively. Complex A exhibits simultaneously red‐shifted C? H…O and blue‐shifted N? H…O H‐bonds. Complex B possesses simultaneously two blue‐shifted H‐bonds: C? H…O and N? H…O. From NBO analysis, it becomes evident that the red‐shifted C? H…O H‐bond can be explained on the basis of the two opposite effects: hyperconjugation and rehybridization. The blue‐shifted C? H…O H‐bond is a result of conjunct C? H bond strengthening effects of the hyperconjugation and the rehybridization due to existence of the significant electron density redistribution effect. For the blue‐shifted N? H…O H‐bonds, the hyperconjugation is inhibited due to existence of the electron density redistribution effect. The large blue shift of the N? H stretching frequency is observed because the rehybridization dominates the hyperconjugation. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Carbon Monoxide Bonding With BeO and BeCO3: Surprisingly High CO Stretching Frequency of OCBeCO3

The complexes OCBeCO₃ and COBeCO₃ have been isolated in a low‐temperature neon matrix. The more stable isomer OCBeCO₃ has a very high C? O stretching mode of 2263 cm^?1, which is blue‐shifted by 122 cm^?1 with respect to free CO and 79 cm^?1 higher than in OCBeO. Bonding analysis of the complexes shows that OCBeO has a stronger OC? BeY bond than OCBeCO₃ because it encounters stronger π backdonation. The isomers COBeCO₃ and COBeO exhibit red‐shifted C? O stretching modes with respect to free CO. The inverse change of C? O stretching frequency in OC? BeY and CO? BeY is explained with the reversed polarization of the σ and π bonds in CO.     

An analytic potential energy function for the amide–amide and amide–water intermolecular hydrogen bonds in peptides

An analytic potential energy function is proposed and applied to evaluate the amide–amide and amide–water hydrogen‐bonding interaction energies in peptides. The parameters in the analytic function are derived from fitting to the potential energy curves of 10 hydrogen‐bonded training dimers. The analytic potential energy function is then employed to calculate the N? H…O?C, C? H…O?C, N? H…OH₂, and C?O…HOH hydrogen‐bonding interaction energies in amide–amide and amide–water dimers containing N‐methylacetamide, acetamide, glycine dipeptide, alanine dipeptide, N‐methylformamide, N‐methylpropanamide, N‐ethylacetamide and/or water molecules. The potential energy curves of these systems are therefore obtained, including the equilibrium hydrogen bond distances R(O…H) and the hydrogen‐bonding energies. The function is also applied to calculate the binding energies in models of β‐sheets. The calculation results show that the potential energy curves obtained from the analytic function are in good agreement with those obtained from MP2/6‐31+G** calculations by including the BSSE correction, which demonstrate that the analytic function proposed in this work can be used to predict the hydrogen‐bonding interaction energies in peptides quickly and accurately. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009     

Theoretical study of the changes in the vibrational characteristics arising from the hydrogen bonding between Vitamin C (L-ascorbic acid) and H2O

The vibrational characteristics (vibrational frequencies, infrared intensities and Raman activities) for the hydrogen-bonded system of Vitamin C (L-ascorbic acid) with five water molecules have been predicted using ab initio SCF/6-31G(d,p) calculations and DFT (BLYP) calculations with 6-31G(d,p) and 6-31++G(d,p) basis sets. The changes in the vibrational characteristics from free monomers to a complex have been calculated. The ab initio and BLYP calculations show that the complexation between Vitamin C and five water molecules leads to large red shifts of the stretching vibrations for the monomer bonds involved in the hydrogen bonding and very strong increase in their IR intensity. The predicted frequency shifts for the stretching vibrations from Vitamin C taking part in the hydrogen bonding are up to -508 cm(-1). The magnitude of the wavenumber shifts is indicative of relatively strong OH...H hydrogen-bonded interactions. In the same time the IR intensity and Raman activity of these vibrations increase upon complexation. The IR intensity increases dramatically (up to 12 times) and Raman activity increases up to three times. The ab initio and BLYP calculations show, that the symmetric OH vibrations of water molecules are more sensitive to the complexation. The hydrogen bonding leads to very large red shifts of these vibrations and very strong increase in their IR intensity. The asymmetric OH stretching vibrations of water, free from hydrogen bonding are less sensitive to the complexation than the hydrogen-bonded symmetric OH stretching vibrations. The increases of the IR intensities for these vibrations are lower and red shifts are negligible.     

Density Functional Theory Study on Hydrogen Bonding Interaction of Catechin-(H2O)n

Density functional theory B3LYP method with 6‐31G* basis set has been used to optimize the geometries of the catechin, water and catechin‐(H₂O)_n complexes. The vibrational frequencies have been studied at the same level to analyze these complexes. Six and eleven stable structures for the catechin‐H₂O and catechin‐(H₂O)₂ have been found, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are from ?13.27 to ?83.56 kJ/mol. All calculations also indicate that there are strong hydrogen‐bonding interactions in catechin‐water complexes. The strong hydrogen‐bonding contributes to the interaction energies dominantly. The O–H stretching motions in all the complexes are red‐shifted relative to that of the monomer.     

Red and blue shifted hydridic bonds

By performing MP2/aug‐cc‐pVTZ ab initio calculations for a large set of dimer systems possessing a R? H hydridic bond involved in diverse types of intermolecular interactions (dihydrogen bonds, hydride halogen bonds, hydride hydrogen bonds, and charge‐assisted hydride hydrogen bonds), we show that this is rather an elongation than a shortening that a hydride bond undergoes on interaction. Contrary to what might have been expected on the basis of studies in uniform electric field, this elongation is accompanied by a blue instead of red shift of the R? H stretching vibration frequency. We propose that the “additional” elongation of the R? H hydridic bond results from the significant charge outflow from the sigma bonding orbital of R? H that weakens this bond. The more standard red shift obtained for stronger complexes is explained by means of the Hermansson's formula and the particularly strong electric field produced by the H‐acceptor molecule. © 2014 Wiley Periodicals, Inc.     

Theoretical Study on the Structures and Properties of Hydrogen Bonding Complexes between Diazines and Water

Density functional theory B3LYP method and second-order Moller-Plesset perturbation theory MP2 method were employed to obtain the optimized geometries of the ground state and interaction energy for diazines and water complexes. The results show that the ground state complexes have strong hydrogen bonding interaction with -20.99, -16.73 and -15.31 kJ/mol after basis set superposition error and zero-point vibration energy correction for pyridazine-water, pyrimidine-water and pyrazine-water, respectively, and large red-shift for the symmetric H-O stretching vibration frequencies due to the formation of N…H-O hydrogen bond in the diazine-water complexes. The NBO analysis indicates that intermolecular charge transfer are 0.0316, 0.0255 and 0.0265 e respectively. In addition, the first singlet （n,n＊） vertical excitation energy of the monomer and the hydrogen bonding complexes between diazines and water was investigated by time-dependent density functional theory.     

Theoretical study of dihydrogen bonded clusters of water with tetrahydroborate

Ab initio calculations were used to analyze interactions of BH₄ ^? with 1?C4 molecules of H₂O at the MP2/6-311++G(d,p) and B3LYP/6-311++G(d,p) computational levels. The negative cooperativity for dihydrogen bond clusters containing H₂O···H₂O hydrogen bonds is more remarkable. The negative cooperativity is increased with increasing the size and also the number of hydrogen bonds in the cluster. The B?CH stretching frequencies show blue shifts with respect to cluster formation. Also greater blue shift of stretching frequencies where predicted for B?CH bonds which did not contribute in dihydrogen bonding with water molecules. The structures obtained have been analyzed with the Atoms in Molecules (AIM) methodology.     

Quantum-chemical study of compounds containing intramolecular O-H…O=C bond

New results of the study of stable intermediates containing an intramolecular hydrogen bond O-H…O=C in the gas phase and solvents, carbon tetrachloride and dioxane, were analyzed. The structural and energy characteristics of the stable conformers of these compounds were determined by a MR2/6-311++G(d, p) method. The most stable is the hydrogen-bonded conformer of 1-hydroxy-1-chloroethyl acetate molecule. The approaches to accounting for the effects of the O-H…O=C intramolecular hydrogen bonding on the molecules reactivity were discussed.     

The Intermolecular S?H⋅⋅⋅Y (Y=S,O) Hydrogen Bond in the H2S Dimer and the H2S–MeOH Complex

The nature of the S? H???S hydrogen‐bonding interaction in the H₂S dimer and its structure has been the focus of several theoretical studies. This is partly due to its structural similarity and close relationship with the well‐studied water dimer and partly because it represents the simplest prototypical example of hydrogen bonding involving a sulfur atom. Although there is some IR data on the H₂S dimer and higher homomers from cold matrix experiments, there are no IR spectroscopic reports on S? H???S hydrogen bonding in the gas phase to‐date. We present experimental evidence using VUV ionization‐detected IR‐predissociation spectroscopy (VUV‐ID‐IRPDS) for this weak hydrogen‐bonding interaction in the H₂S dimer. The proton‐donating S? H bond is found to be red‐shifted by 31 cm^?1. We were also able to observe and assign the symmetric (ν₁) stretch of the acceptor and an unresolved feature owing to the free S? H of the donor and the antisymmetric (ν₃) SH stretch of the acceptor. In addition we show that the heteromolecular H₂S–MeOH complex, for which both S? H???O and O? H???S interactions are possible, is S‐H???O bound.     

On the nature of the surprisingly small (red) shift in the halothane...acetone complex.

The halothane???acetone and fluoroform???acetone complexes are studied using the second‐order Møller–Plesset (MP2) method with a cc‐pVTZ basis set and the density functional theory (DFT) method with a TZVP basis set. Whereas halothane exhibits a small red shift upon complexation, fluoroform shows a pronounced blue shift. To explain this difference in behavior, we perform symmetry‐adapted perturbation theory (SAPT) and natural bond orbital (NBO) analyses. Although the composition of the total stabilization energy of each complex is different, that alone does not provide a satisfactory explanation for the difference in the spectral shifts. This difference is interpreted as a result of the interplay of the hyperconjugation and rehybridization mechanisms. The small and surprising red shift of the C? H stretching frequency of halothane, which resulted from the complexation of this species with acetone,is explained by the compensation of the two above‐mentioned mechanisms. On the other hand, the fluoroform???acetone complex exhibits a blue shift of the C? H stretching frequency upon complexation, the most likely reason for this shift being a concerted occurrence of the hyperconjugation and rehybridization mechanisms. The calculated shift of the C? H stretching vibration frequencies of halothane (+27 cm^?1) agree with the experimental value of +5 cm^?1.     

Optimized structures and vibration frequencies of the ether–water complex: a DFT and FTIR study

The infrared spectrum of ether was studied using Fourier transform infrared spectroscopy in conjunction with the density functional theory (DFT). The optimized structures and vibrational frequencies of the ether·(H₂O) _n (n = 1–3) complexes were obtained at B3LYP/6-31G(d) theory levels. Compared to those of free-form ether, the C–O stretching vibrational frequencies of the ether–water complexes are found to shift to red by up to 39 cm^?1 with an increase in the C–O length of 0.016 Å. Meanwhile, the frequency of the O–H stretching modes of water in the complexes appears significantly redshifted to a varying degree. The DFT calculations suggest that these shifts are caused by the hydrogen bonding between ether and water.     

A computational study on the ring stretching modes of halogen‐substituted pyridine involved in H‐bonding

Density functional method B3LYP plus the AUG‐cc‐pVDZ and AUG‐cc‐pVTZ basis sets is used to investigate ring normal modes of halogen‐substituted pyridines involved in the N ··· H? X H‐bonds with HX (X = F, Cl). The results demonstrated that the formation of hydrogen bond leads to an increase in the frequencies of the ring breathing mode v₁, the N‐para‐C stretching mode v_6a and the meta‐CC stretching mode v_8a, whereas there is no change in the triangle mode v₁₂ for free pyridine and a smaller blue shift for substituted pyridines. There is a strong coupling between the C? Y stretching vibration and the triangle mode (ortho‐ and para‐substituted) or the breathing mode (meta‐substituted) in substituted pyridines, which leads to the frequency decrease in the triangle or breathing modes. The natural bond orbital analysis suggests that electrostatic interaction and charge transfer caused by the intermolecular and intramolecular hyperconjugations are the origin of the frequency blue shift in the ring stretching modes. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012