Hydrogen bonding structure and many‐body interactions in 1,3,5‐triazine–(water)3 and 1,2,4‐triazine–(water)3 complexes

The hydrogen bonding structure and many‐body interactions between 1,3,5‐triazine (1,2,4‐triazine) and three water molecules are studied using the density functional theory (DFT) B3LYP method and 6‐31++G** basis set. Various structures of 1,3,5‐triazine–(water)₃ and 1,2,4‐triazine–(water)₃ complexes are investigated, and the seven and eight stable structures are reported for 1,3,5‐triazine–(water)₃ and 1,2,4‐triazine–(water)₃, respectively. Many‐body analysis is also carried out to obtain relaxation energy and many‐body interaction energy (two‐, three‐, and four‐body), and the most stable conformer has the basis set superposition error corrected interaction energy of ?92.09 and ?99.53 kJ/mol. The two‐ and three‐body interactions have significant contribution to the total interaction energy, whereas the relaxation energy, four‐body interactions are very small for 1,3,5‐triazine–(water)₃ and 1,2,4‐triazine–(water)₃ complexes. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Hydrogen bonding interaction in sarcosine–water complex using ab initio and DFT method

The hydrogen bonding interaction in the Sarcosine (N‐methylglycine)–water complex is studied using ab initio, MP2, and density functional theory (DFT/B3LYP). For this complex, binding energies, dipole–dipole interactions, chemical hardness, and chemical potential have been calculated. Three different basis sets, viz. 6‐311+G, 6‐311++G, and 6‐311++G*, have been used to optimize the geometries by all three methods. The basis set superposition errors are also calculated, and the corrected binding energies are reported for this complex. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Ab initio study of the structure,cooperativity, and vibrational properties in the mixed hydrogen‐bonded trimers of hydrogen isocyanide and water

The five trimers of H₂O···HNC···H₂O, H₂O···H₂O···HNC, HNC···H₂O···H₂O, H₂O···HNC···HNC, and HNC···HNC···H₂O have been studied with quantum chemical calculations. Their structures, harmonic vibrational frequencies and interaction energies have been calculated at the B3LYP and MP2 levels with the aug‐cc‐pVDZ and aug‐cc‐pVTZ basis sets. The cooperative effect on these properties has also been studied quantitatively. For HNC:(H₂O)₂ systems, the cyclic H₂O···H₂O···HNC trimer is most stable with an interaction energy of ?16.01 kcal/mol and a large cooperative energy of ?3.25 kcal/mol at the MP2/aug‐cc‐pVTZ level. For H₂O:(HNC)₂ systems, the interaction energy and cooperative energy in the H₂O···HNC···HNC trimer are larger than those in the HNC···HNC···H₂O trimer. The NH stretch frequency has a blue shift for the terminal HNC molecule in the HNC···H₂O···H₂O and HNC···HNC···H₂O trimers and a red shift in other cases. A many‐body analysis has also been performed to understand the interaction energies in these hydrogen‐bonded clusters. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Cocrystals of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene and benzene‐1,4‐dicarbaldehyde exhibiting strong nonconventional alkyne–carbonyl C—H…O hydrogen bonds between the components

Weak interactions between organic molecules are important in solid‐state structures where the sum of the weaker interactions support the overall three‐dimensional crystal structure. The sp‐C—H…N hydrogen‐bonding interaction is strong enough to promote the deliberate cocrystallization of a series of diynes with a series of dipyridines. It is also possible that a similar series of cocrystals could be formed between molecules containing a terminal alkyne and molecules which contain carbonyl O atoms as the potential hydrogen‐bond acceptor. I now report the crystal structure of two cocrystals that support this hypothesis. The 1:1 cocrystal of 1,4‐diethynylbenzene with 1,3‐diacetylbenzene, C₁₀H₆·C₁₀H₁₀O₂, (1), and the 1:1 cocrystal of 1,4‐diethynylbenzene with benzene‐1,4‐dicarbaldehyde, C₁₀H₆·C₈H₆O₂, (2), are presented. In both cocrystals, a strong nonconventional ethynyl–carbonyl sp‐C—H…O hydrogen bond is observed between the components. In cocrystal (1), the C—H…O hydrogen‐bond angle is 171.8 (16)° and the H…O and C…O hydrogen‐bond distances are 2.200 (19) and 3.139 (2) Å, respectively. In cocrystal (2), the C—H…O hydrogen‐bond angle is 172.5 (16)° and the H…O and C…O hydrogen‐bond distances are 2.25 (2) and 3.203 (2) Å, respectively.     

1,2,3-三氮杂苯－(水)3复合物多体相互作用

The interaction between 1,2,3-triazine and three water molecules was studied using density functional theory B3LYP method at 6-31-t＋＋G^＊＊ basis set. Various structures for 1,2,3-triazine-（water）n （n= 1, 2, 3） complex were investigated and the different lower energy structures were reported. Many-body analysis was also carded out to obtain relaxation energy and many-body interaction energy （two, three, and four-body）, and the most stable conformer has the basis set superposition error corrected interaction energy of -- 102.61 kJ/mol. The relaxation energy, two- and three-body interactions have significant contribution to the total interaction energy whereas four-body interaction was very small for 1,2,3-triazine-（water）3 complex.     

Poly(2,5‐dihydroxy‐1,4‐phenylene benzobisthiazole)/poly(1,4‐phenylene benzobisthiazole) copolymers: Chain packing and properties

Crystal‐packing, optical, and electrical properties of poly(2,5‐dihydroxy‐1,4‐phenylene benzobisthiazole) (DiOH‐PBZT) and copolymers of DiOH‐PBZT/poly(1,4‐phenylene‐benzobisthiazole) (PBZT) were examined. Intramolecular hydrogen bonds between the hydroxyl units and the neighboring nitrogen atoms, as evidenced by the IR spectra, led to the formation of a pseudoladder chain structure and changed the chain packing. The (200) and (010) planes were both affected by the copolymer composition, with the (200) plane spacing increasing from 5.895 to 6.482 Å and the (010) plane spacing decreasing from 3.539 to 3.404 Å with the transition from the unsubstituted PBZT homopolymer to the DiOH‐PBZT homopolymer. The cell dimensions of the copolymers were simple averages of those of the individual homopolymers, suggesting the isomorphic crystal structure formation of the two units. The c‐axis spacing, however, remained unchanged. The increase in the conjugation length of the copolymers as the dihydroxy content increased was confirmed by the bathochromic shift of the absorption band in the ultraviolet–visible spectra. The intrinsic conductivities of the copolymers were 3 orders of magnitude higher than that of the unsubstituted PBZT. © 2001 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 39: 559–565, 2001     

Hydrogen‐bonding interaction and miscibility between poly(ε‐caprolactone) and enzymatically polymerized novel polyphenols

The intermolecular hydrogen‐bonding interaction and miscibility between enzymatically prepared novel polyphenols [poly(bisphenol A) and poly(p‐tert‐butyl phenol)] and poly(ε‐caprolactone) (PCL) were investigated as a function of composition by Fourier transform infrared spectroscopy (FTIR) and DSC. The blend films of PCL and polyphenols were prepared by casting polymer solution. The FTIR spectra clearly indicated that PCL and polyphenols interact through strong intermolecular hydrogen bonds formed between the PCL carbonyls and the polyphenol hydroxyl groups. The melting point and degree of crystallinity of the PCL component decreased with an increased polyphenol content. A single glass‐transition temperature was observed for the blend, and its value increased with the content of polyphenol, indicating that PCL and polyphenols are miscible in the amorphous state. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 2898–2905, 2001     

Density functional theory study of the interaction between 3‐nitro‐1,2,4‐triazole‐5‐one and ammonia

Two fully optimized geometries of 3‐nitro‐1,2,4‐triazol‐5‐one (NTO)–NH₃ complexes have been obtained with the density function theory (DFT) method at the B3LYP/6‐311++G** level. The intermolecular interaction energy is calculated with zero point energy (ZPE) correction and basis set superposition error (BSSE) correction. The greatest corrected intermolecular interaction of the NTO–NH₃ complexes is ?37.58 kJ/mol. Electrons in complex systems transfer from NH₃ to NTO. The strong hydrogen bonds contribute to the interaction energies dominantly. Natural bond orbital (NBO) analysis is performed to reveal the origin of the interaction. Based on vibrational analysis, the changes of thermodynamic properties from the monomer to complexes with the temperature ranging from 200 K to 800 K have been obtained using the statistical thermodynamic method. It is found that two NTO–NH₃ complexes can be produced spontaneously from NTO and NH₃ at normal temperature. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Intramolecular hydrogen bonding in derivatives of 3‐amino‐propenethial

Intramolecular H‐bonds existing for derivatives of 3‐amino‐propenethial have been studied using the B3LYP/6‐311++G** level of theory. The nature of these interactions, known as resonance assisted hydrogen bonds, has been discussed. The topological properties of the electron density distributions for N—H—S intramolecular bridges have been analyzed in terms of the Bader theory of atoms in molecules. Correlations between the H‐bond strength and topological parameters have been also studied. Furthermore, we obtained the exact value of the intramolecular hydrogen bond energies by the related rotamers method. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

A one‐dimensional ladder‐like six‐coordinate cadmium polymer: catena‐poly[bis[(S)‐2‐methylpiperazine‐1,4‐diium] [bis[trichloridocadmium(II)]‐di‐μ3‐chlorido]]

The crystal structure of the title compound {(C₅H₁₄N₂)₂[Cd₂Cl₈]}_n, (I), consists of hydrogen‐bonded 2‐methylpiperazinediium (H₂MPPA²⁺) cations in the presence of one‐dimensional polymeric {[CdCl₃(μ₃‐Cl)]²⁻}_n anions. The Cd^II centres are hexacoordinated by three terminal chlorides and three bridging chlorides and have a slightly distorted octahedral CdCl₃(μ₃‐Cl)₃ arrangement. The alternating CdCl₆ octahedra form four‐membered Cd₂Cl₂ rings by the sharing of neighbouring Cd–Cl edges to give rise to extended one‐dimensional ladder‐like chains parallel to the b axis, with a Cd...Cd distance of 4.094 (2) Å and a Cd...Cd...Cd angle of 91.264 (8)°. The H₂MPPA²⁺ cations crosslink the [CdCl₃(μ₃‐Cl)]_n chains by the formation of two N—H...Cl hydrogen bonds to each chain, giving rise to one‐dimensional ladder‐like H₂MPPA²⁺–Cl₂ hydrogen‐bonded chains [graph set R₄²(14)]. The [CdCl₃(μ₃‐Cl)]_n chains are interwoven with the H₂MPPA²⁺–Cl₂ hydrogen‐bonded chains, giving rise to a three‐dimensional supramolecular network.     

Hydrogen bonding in 4‐nitrobenzene‐1,2‐diamine and two hydrohalide salts

The structures of 4‐nitrobenzene‐1,2‐diamine [C₆H₇N₃O₂, (I)], 2‐amino‐5‐nitroanilinium chloride [C₆H₈N₃O₂⁺·Cl⁻, (II)] and 2‐amino‐5‐nitroanilinium bromide monohydrate [C₆H₈N₃O₂⁺·Br⁻·H₂O, (III)] are reported and their hydrogen‐bonded structures described. The amine group para to the nitro group in (I) adopts an approximately planar geometry, whereas the meta amine group is decidedly pyramidal. In the hydrogen halide salts (II) and (III), the amine group meta to the nitro group is protonated. Compound (I) displays a pleated‐sheet hydrogen‐bonded two‐dimensional structure with R₂²(14) and R₄⁴(20) rings. The sheets are joined by additional hydrogen bonds, resulting in a three‐dimensional extended structure. Hydrohalide salt (II) has two formula units in the asymmetric unit that are related by a pseudo‐inversion center. The dominant hydrogen‐bonding interactions involve the chloride ion and result in R₄²(8) rings linked to form a ladder‐chain structure. The chains are joined by N—H...Cl and N—H...O hydrogen bonds to form sheets parallel to (010). In hydrated hydrohalide salt (III), bromide ions are hydrogen bonded to amine and ammonium groups to form R₄²(8) rings. The water behaves as a double donor/single acceptor and, along with the bromide anions, forms hydrogen bonds involving the nitro, amine, and ammonium groups. The result is sheets parallel to (001) composed of alternating R₅⁵(15) and R₆⁴(24) rings. Ammonium N—H...Br interactions join the sheets to form a three‐dimensional extended structure. Energy‐minimized structures obtained using DFT and MP2 calculations are consistent with the solid‐state structures. Consistent with (II) and (III), calculations show that protonation of the amine group meta to the nitro group results in a structure that is about 1.5 kJ mol⁻¹ more stable than that obtained by protonation of the para‐amine group. DFT calculations on single molecules and hydrogen‐bonded pairs of molecules based on structural results obtained for (I) and for 3‐nitrobenzene‐1,2‐diamine, (IV) [Betz & Gerber (2011). Acta Cryst. E 67 , o1359] were used to estimate the strength of the N—H...O(nitro) interactions for three observed motifs. The hydrogen‐bonding interaction between the pairs of molecules examined was found to correspond to 20–30 kJ mol⁻¹.     

Hydrogen bonding in polyamino‐polyalcohols: a monohydrated cocrystal of 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol iodide and 1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol

In the title monohydrated cocrystal, namely 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol iodide–1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol–water (1/1/1), C₆H₁₆N₃O₃⁺·I⁻·C₆H₁₅N₃O₃·H₂O, the neutral 1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol (taci) molecule and the monoprotonated 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol cation (Htaci⁺) both adopt a chair conformation, with the three O atoms in axial and the three N atoms in equatorial positions. The cation, but not the neutral taci unit, exhibits intramolecular O—H...O hydrogen bonding. The entire structure is stabilized by a complex three‐dimensional network of intermolecular hydrogen bonds. The neutral taci entities and the Htaci⁺ cations are each aligned into chains along [001]. In these chains, two O—H...N interactions generate a ten‐membered ring as the predominant structural motif. The rings consist of vicinal 2‐amino‐1‐hydroxyethylene units of neighbouring molecules, which are paired via centres of inversion. The chains are interconnected into undulating layers parallel to the ac plane, and the layers are further held together by O—H...N hydrogen bonds and additional interactions with the iodide counter‐anions and solvent water molecules.     

CdII and CoII coordination polymers constructed from benzene‐1,4‐dicarboxylic acid and 2‐(pyridin‐3‐yl)‐1H‐benzimidazole ligands

In poly[aqua(μ₃‐benzene‐1,4‐dicarboxylato‐κ⁵O¹,O^1′:O¹:O⁴,O^4′)[2‐(pyridin‐3‐yl‐κN)‐1H‐benzimidazole]cadmium(II)], [Cd(C₈H₄O₄)(C₁₂H₉N₃)(H₂O)]_n, (I), each Cd^II ion is seven‐coordinated by the pyridine N atom from a 2‐(pyridin‐3‐yl)benzimidazole (3‐PyBIm) ligand, five O atoms from three benzene‐1,4‐dicarboxylate (1,4‐bdc) ligands and one O atom from a coordinated water molecule. The complex forms an extended two‐dimensional carboxylate layer structure, which is further extended into a three‐dimensional network by hydrogen‐bonding interactions. In catena‐poly[[diaquabis[2‐(pyridin‐3‐yl‐κN)‐1H‐benzimidazole]cobalt(II)]‐μ₂‐benzene‐1,4‐dicarboxylato‐κ²O¹:O⁴], [Co(C₈H₄O₄)(C₁₂H₉N₃)₂(H₂O)₂]_n, (II), each Co^II ion is six‐coordinated by two pyridine N atoms from two 3‐PyBIm ligands, two O atoms from two 1,4‐bdc ligands and two O atoms from two coordinated water molecules. The complex forms a one‐dimensional chain‐like coordination polymer and is further assembled by hydrogen‐bonding interactions to form a three‐dimensional network.     

Intramolecular hydrogen bonding in 3‐imino‐propenylamine: Theoretical investigations

Intramolecular H‐bonds existing for derivatives of 3‐imino‐propenylamine have been studied using the B3LYP/6‐311++G** level of theory. The nature of these interactions, known as resonance‐assisted hydrogen bonds, has been discussed. Vibrational frequencies for α‐derivatives were calculated at the same level of theory. The topological properties of the electron density distributions for N? H···N intramolecular bridges have been analyzed in terms of the Bader theory of atoms in molecules (AIM). Calculation for 3‐imino‐propenylamine derivatives in water solution were also carried out at B3LYP/6‐311++G** level of theory. Finally, the analysis of hydrogen bond in this molecule and their derivatives by quantum theory of natural bond orbital methods fairly support the ab initio results. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

ZnII‐ and AuI‐Catalyzed Regioselective Hydrative Oxidations of 3‐En‐1‐ynes with Selectfluor: Realization of 1,4‐Dioxo and 1,4‐Oxohydroxy Functionalizations

Catalytic 1,4‐dioxo functionalizations of 3‐en‐1‐ynes to (Z)‐ and (E)‐2‐en‐1,4‐dicarbonyl compounds are described. This regioselective difunctionalization was achieved in one‐pot operation through initial alkyne hydration followed by in situ Selectfluor oxidation. The presence of pyridine alters the reaction chemoselectivity to give 4‐hydroxy‐2‐en‐1‐carbonyl products instead. A cooperative action of pyridine and Zn^II assists the hydrolysis of key oxonium intermediate.     

Theoretical and experimental 15N NMR study of enamine–imine tautomerism of 4‐trifluoromethyl[b]benzo‐1,4‐diazepine system

The tautomeric structure of 4‐trifluoromethyl[b]benzo‐1,4‐diazepine system in solution has been evaluated by means of the calculation of ¹⁵N NMR chemical shifts of individual tautomers in comparison with the averaged experimental shifts to show that the enamine–imine equilibrium is entirely shifted toward the imine form. The adequacy of the theoretical level used for the computation of ¹⁵N NMR chemical shifts in this case has been verified based on the benchmark calculations in the series of the push–pull and captodative enamines together with related azomethynes, which demonstrated a good to excellent agreement with experiment. Copyright © 2015 John Wiley & Sons, Ltd.     

Donor–acceptor photovoltaic polymers based on 1,4‐dithienyl‐2,5‐dialkoxybenzene with intramolecular noncovalent interactions

Donor–acceptor (D–A) conjugated polymers bearing non‐covalent configurationally locked backbones have a high potential to be good photovoltaic materials. Since 1,4‐dithienyl‐2,5‐dialkoxybenzene ( TBT ) is a typical moiety possessing intramolecular S…O interactions and thus a restricted planar configuration, it was used in this work as an electron‐donating unit to combine with the following electron‐accepting units: 3‐fluorothieno[3,4‐b]thiophene ( TFT ), thieno‐[3,4‐c]pyrrole‐4,6‐dione ( TPD ), and diketopyrrolopyrrole ( DPP ) for the construction of such D–A conjugated polymers. Therefore, the so‐designed three polymers, PTBTTFT , PTBTTPD , and PTBTDPP , were synthesized and investigated on their basic optoelectronic properties in detail. Moreover, using [6,6]‐phenyl‐C₇₁‐butyric acid methyl ester (PC₇₁BM) as acceptor material, polymer solar cells (PSCs) were fabricated for studying photovoltaic performances of these polymers. It was found that the optimized PTBTTPD cell gave the best performance with a power conversion efficiency (PCE) of 4.49%, while that of PTBTTFT displayed the poorest one (PCE = 1.96%). The good photovoltaic behaviors of PTBTTPD come from its lowest‐lying energy level of the highest occupied molecular orbital (HOMO) among the three polymers, and good hole mobility and favorable morphology for its PC₇₁BM‐blended film. Although PTBTDPP displayed the widest absorption spectrum, the largest hole mobility, and regular chain packing structure when blended with PC₇₁BM, its unmatched HOMO energy level and disfavored blend film morphology finally limited its solar cell performance to a moderate level (PCE: 3.91%). © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 689–698     

Theoretical investigations of 1,4‐butanediol and 2‐butene‐1,4‐diol cyclodehydration using postprocessing visualization of quantum chemical calculation data

Cyclodehydration of 1,4‐butanediol and 2‐butene‐1,4‐diol to the corresponding cyclic ethers was studied using the AM1 semiempirical method. It was established that the cyclodehydration reaction of 1,4‐butenediol and 2‐butene‐1,4‐diol is effected by converting of semicyclic conformers in the presence of acidic and basic active centers. The calculation results indicate that a concerted mechanism is probably realized in the cyclodehydration of both diols, while the sequences of the predicted steps in the cyclodehydration reaction for 1,4‐butanediol and 2‐butene‐1,4‐diol are different. The calculated reaction heats for 1,4‐butanediol and 2‐butene‐1,4‐diol transformations are ?184.029 and ?308.746 kcal/mol, respectively. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Competition between hydrogen and halogen bonding in halogenated 1‐methyluracil: Water systems

The competition between hydrogen‐ and halogen‐bonding interactions in complexes of 5‐halogenated 1‐methyluracil (XmU; X = F, Cl, Br, I, or At) with one or two water molecules in the binding region between C5‐X and C4?O4 is investigated with M06‐2X/6‐31+G(d). In the singly‐hydrated systems, the water molecule forms a hydrogen bond with C4?O4 for all halogens, whereas structures with a halogen bond between the water oxygen and C5‐X exist only for X = Br, I, and At. Structures with two waters forming a bridge between C4?O and C5‐X (through hydrogen‐ and halogen‐bonding interactions) exist for all halogens except F. The absence of a halogen‐bonded structure in singly‐hydrated ClmU is therefore attributed to the competing hydrogen‐bonding interaction with C4?O4. The halogen‐bond angle in the doubly‐hydrated structures (150–160°) is far from the expected linearity of halogen bonds, indicating that significantly non‐linear halogen bonds may exist in complex environments with competing interactions. © 2016 Wiley Periodicals, Inc.