Trends in the Structural and Vibrational Properties of the Disulfanes S2X2 (X = H,Halogen, CH3, CF3)

The geometrical parameters and associated force constants for the molecules XSSX (X = H, halogen, CH₃, CF₃) were studied using DFT quantum chemistry calculations. The study showed rather monotonic trends in these properties related to the SS bonds, although an anomalous behavior is noted when the substituent is CF₃. The calculated vibrational frequencies allowed a confirmation of published band assignments, but corrections were necessary for S₂F₂ and S₂H₂.     

Scaled Quantum Mechanical Force Fields for the CF3SX Molecules (X = H,F, Cl,Br, I)

Density functional theory calculations at different levels of theory were performed on the molecules of the series CF₃SX (X = H, F, Cl, Br, I) in order to obtain their optimized geometric parameters and conformations, the wavenumbers corresponding to the normal modes of vibrations and the associated force constants. The obtained force fields were transformed to local symmetry coordinates and scaled to reproduce the experimental wavenumbers.     

Scaled Quantum Mechanical Force Fields for the Isoelectronic Molecules CF3X (X = SiH3, PH2, SH,Cl )

The vibrational properties of the CF₃X (X = SiH₃, PH₂, SH, Cl) series of molecules were studied by means of density functional theory (DFT) techniques. After obtaining the optimized geometrical parameters and conformations, the frequencies corresponding to the normal modes of vibration and the associated force constants were calculated. The original force fields in Cartesian coordinates were transformed to local symmetry coordinates and subsequently scaled to reproduce the experimental frequencies. Some trends observed in the experimental data could be explained on the basis of the calculated atomic charges.     

Tricyclopropylamine and Its Radical Cation

A surprisingly high first vertical ionization energy (8.44 eV) and an unusually high oxidation potential are exibited by tricyclopropylamine ( 1 )—in sharp contrast to triisopropylamine. These are attributed to the near-tetrahedral geometry of 1 at the N atom and the perpendicular orientation—with respect to the N-orbital axis—of the cyclopropyl groups. γ-Irradiation of 1 led to the radical cation 1 ^.+, which, in accord with computations, has a planar C_3h-symmetrical structure. The EPR-spectroscopic and computational results disclose a dramatic, previously not reported, conformational change on going from 1 to 1 ^.+.     

Anharmonic vibrational spectroscopy calculations with electronic structure potentials: comparison of MP2 and DFT for organic molecules

Density functional theory (DFT) technique is the most commonly used approach when it comes to computation of vibrational spectra of molecular species. In this study, we compare anharmonic spectra of several organic molecules such as allene, propyne, glycine, and imidazole, computed from ab initio MP2 potentials and DFT potentials based on commonly used BLYP and B3LYP functionals. Anharmonic spectra are obtained using the direct vibrational self-consistent field (VSCF) method and its correlation-corrected extension (CC-VSCF). The results of computations are compared with available experimental data. It is shown that the most accurate vibrational frequencies are obtained with the MP2 method, followed by the DFT/B3LYP method, while DFT/BLYP results are often unsatisfactory. Contribution to the Mark S. Gordon 65th Birthday Festschrift Issue.     

Predicting Stable Molecular Structures for (RNC)2AuIX Complexes

Calculations have been performed at the MP2 and DFT levels for investigating the reasons for the difficulties in synthesizing bis(isocyanide)gold(I) halide complexes. Three‐coordinated gold(I) complexes of the type (R₃P)₂Au^IX ( 1 ) can be synthesized, whereas the analogous isocyanide complexes (RNC)₂Au^IX ( 2 ) are not experimentally known. The molecular structures of (R₃P)₂Au^IX (X = Cl, Br, and I) and (RNC)₂Au^IX with X = halide, cyanide, nitrite, methylthiolate, and thiocyanate are compared and structural differences are discussed. Calculations of molecular properties elucidate which factors determine the strength of the gold‐ligand interactions in (RNC)₂Au^IX. The linear bonding mode of RNC favors a T‐shaped geometry instead of the planar Y‐shaped trigonal structure of (R₃P)₂Au^IX complexes that have been synthesized. An increased polarity of the Au–X bond in 2 leads to destabilization of the Y‐shaped structure. Chalcogen‐containing ligands or cyanide appear to be good X‐ligand candidates for synthesis of (RNC)₂Au^IX complexes.     

Die Reaktionen von M[BF4] (M = Li,K) und (C2H5)2O·BF3 mit (CH3)3SiCN. Bildung von M[BFx>(CN)4—x] (M = Li,K; x = 1, 2) und (CH3)3SiNCBFx(CN)3—x, (x = 0, 1)

The Reactions of M[BF₄] (M = Li, K) and (C₂H₅)₂O·BF₃ with (CH₃)₃SiCN. Formation of M[BF_x(CN)_4—x] (M = Li, K; x = 1, 2) and (CH₃)₃SiNCBF_x(CN)_3—x, (x = 0, 1) The reaction of M[BF₄] (M = Li, K) with (CH₃)₃SiCN leads selectively, depending on the reaction time and temperature, to the mixed cyanofluoroborates M[BF_x(CN)_4—x] (x = 1, 2; M = Li, K). By using (C₂H₅)₂O·BF₃ the synthesis yields the compounds (CH₃)₃SiNCBF_x(CN)_3—x x = 0, 1. The products are characterized by vibrational and NMR‐spectroscopy, as well as by X‐ray diffraction of single‐crystals: Li[BF₂(CN)₂]·2Me₃SiCN Cmc2₁, a = 24.0851(5), b = 12.8829(3), c = 18.9139(5) Å V = 5868.7(2) ų, Z = 12, R₁ = 4.7%; K[BF₂(CN)₂] P4₁2₁2, a = 13.1596(3), c = 38.4183(8) Å, V = 6653.1(3) ų, Z = 48, R₁ = 2.5%; K[BF(CN)₃] P1¯, a = 6.519(1), b = 7.319(1), c = 7.633(2) Å, α = 68.02(3), β = 74.70(3), γ = 89.09(3)°, V = 324.3(1) ų, Z = 2, R₁ = 3.6%; Me₃SiNCBF(CN)₂ Pbca, a = 9.1838(6), b = 13.3094(8), c = 16.840(1) Å, V = 2058.4(2) ų, Z = 8, R₁ = 4.4%     

Implications of Nitrogen Doping on Geometrical and Electronic Structure of the Fullerene Dimers

Because of its unsaturated bonds, C₆₀ is susceptible to polymerize into dimers. The implications of nitrogen doping on the geometrical and electronic structure of C₆₀ dimers have been ambiguous for years. A quarter‐century after the discovery of azafullerene dimer (C₅₉N)₂, we reported its single crystallographic structure in 2019. Herein, the unambiguous crystal structure information of (C₅₉N)₂ is elucidated specifically, revealing that the inter‐cage C—C single bond length of (C₅₉N)₂ is comparable with that of an ordinary C(sp³)‐C(sp³) single bond, and that the most stable conformer of (C₅₉N)₂ is gauche‐conformer with a dihedral angle of 66°. To amend the structural deviations, geometrical structure of (C₅₉N)₂ is optimized by a B3LYP‐D3BJ function, which is proved to be more consistent with its single crystal structure than those by the commonly used B3LYP function. Moreover, the calculation method is also suitable for other representative fullerene dimers, such as (C₆₀)₂ and its divalent anion. Additionally, the dissociation of (C₅₉N)₂ at 473 K under mass spectrometric conditions suggests the inter‐cage C—C bond is relatively weaker than an ordinary C—C single bond, which can be explained by the interaction energies of inter‐cages.     

Scalar Coupling Constants—Their Analysis and Their Application for the Elucidation of Structures

Since their discovery in the early fifties, scalar/coupling constants have been of great interest to the NMR spectroscopist. Their impact on structure determination by NMR spectroscopy is founded on the fact that the size of the coupling constant is directly related to molecular conformation. Today, for most chemical substances the parameters for the Karplus relationship, which relates the vicinial (3-bond) coupling constant to the dihedral angle, have been determined. In addition to proton–proton distances, the application of coupling constants in modern conformational analysis is indispensable. In the study of larger molecules which are of current interest, more and more involved experiments are necessary in order to overcome signal overlap and increasing line widths. A large number of experimental techniques for the determination of coupling constants has been developed; however, for this reason the choice of the most appropriate experiment to use has become more difficult. This decision must be made carefully to maximize instrument usage and obtain the largest number of couplings with the greatest accuracy possible. Many of the computer programs used in structure calculations can directly apply coupling constant restraints, similar to proton–proton distances developed from NOEs. Therefore, not only is the quality of the structure improved, but the molecular motions (internal dynamics) are better described. In this article, we review the techniques that exist today with particular attention paid to helping the non-expert to choose the appropriate experiment for the problem at hand. In addition, the use of coupling constants in computer simulations are discussed.     

Darstellung,spektroskopische Charakterisierung und Kristallstrukturen von Quecksilber(II)‐bis(tetracyanoborat) Hg[B(CN)4]2 und Diquecksilber(I)‐bis(tetracyanoborat) Hg2[B(CN)4]2

Preparation, Spectroscopic Characterization and Crystal Structures of Mercury(II)‐bis(tetracyanoborate) Hg[B(CN)₄]₂ and Dimercury(I)‐bis(tetracyanoborate) Hg₂[B(CN)₄]₂ Hg[B(CN)₄]₂ ( 1 ) is synthesised by the reaction between Hg(NO₃)₂ and K[B(CN)₄]₂. In a comproportionation reaction of 1 with elemental mercury the corresponding mercury(I) salt Hg₂[B(CN)₄]₂ ( 2 ) is obtained. The compounds were characterised by vibrational‐ and NMR‐spectroscopy, and their crystal structures were determined. Hg[B(CN)₄]₂ crystallizes in the trigonal system in the space group P3¯m1 with a = 781.75(3) pm, c = 601.68(2) pm, V = 318.44(2)ų, and one formula unit per unit cell. For Hg₂[B(CN)₄]₂ an orthorhombic unit cell with a = 568.9(1) pm, b = 3280.9(7) pm, c = 601.68(2) pm, V = 1389.6(5)Å, and Z = 4 is observed.     

氢键缔合体的分子力场和振动光谱的研究

氢键缔合体的分子力场和振动光谱的研究孙泽民，王丰，唐作华，鄢国森（四川大学化学系，成都，６１００６４）关键词氢键，力常数，振动频率氢键缔合体的结构在一定程度上受单体间氢键作用的影响，而振动光谱对分子结构及其坏境的变化极为敏感，故其在探讨分子间氢键方面...     

Predictive Abilities of Scaled Quantum Mechanical Molecular Force Fields: Application to 1,3-Butadiene

The positions of some IR bands of the s-trans-1,3-butadiene-h ₆ and -1,1,2-d ₃ isotopomers in the gas phase have been measured using a Brucker IFS 120 HR spectrometer with a resolution of 2 cm^–1. The structural parameters of the s-trans- and s-gauche-1,3-butadiene conformers were optimized completely at the MP2/6-31G* theoretical level and their MP2/6-31G*//MP2/6-31G* quantum mechanical force fields (QMFFs) were calculated. Using only the experimental vibrational frequencies of s-trans-1,3-butadiene-h ₆ the QMFF of the s-trans conformer was corrected by Pulay's scaling method (eight scale factors were involved). The scaled QMFF was used to calculate the mean vibrational amplitudes and the Coriolis coupling constants of s-trans-1,3-butadiene-h ₆ and the vibrational frequencies of 12 of its deuterated isotopomers. The set of scale factors obtained for correction of the s-trans QMFF was transferred to the QMFF of the s-gauche conformer. Its theoretical vibrational spectrum and those of some deuterated and C¹³ isotopomers were calculated. The ability of this scaling approach (transferring of scale factors) to predict the vibrational frequencies of rotational conformers and their isotopomers, as well as other molecular characteristics, and to permit detection of perturbations of the experimental bands are discussed.     

A Silatetragallane—Classical Heterobicyclopentane or closo-Polyhedron?

Classical and nonclassical can be used to describe the bonding in the polyhedral Ga₄Si framework of the silagallanate ion [Me₃SiSi{GaSi(SiMe₃)₃}₃GaSiMe₃]⁻ (the GaSi framework is depicted in the picture). This is the result of density functional calculations that were carried out on model compounds. The cluster was obtained by ultrasonication of gallium and iodine and subsequent reaction with (Me₃Si)₃Li(thf)₃.     

DFT Calculations of the Molecular Force Field of Vanadyl Nitrate,VO(NO3)3

A structural and vibrational theoretical study for vanadyl nitrate was carried out. The Density Functional Theory (DFT) has been used to study vibrational properties. The structures were fully optimized at the B3LYP/6‐31G*, B3LYP/6‐311G*, and B3LYP/6‐311+G* levels of theory and the harmonic vibrational frequencies were evaluated at the same level. The calculated harmonic vibrational frequencies for vanadyl nitrate are consistent with their experimental IR and Raman spectra in gas and liquid phases. Through these calculations a precise knowledge of the normal modes of vibration was obtained, considering the coordination mode adopted by the nitrate group in the mirror plane as monodentate and bidentate. A total assignment of the observed bands in the vibrational spectra for vanadyl nitrate is proposed in this work. The nature of the V–O and V ← O bonds in the compound was systematically and quantitatively investigated by means of the Natural Bond Order (NBO) analysis. The topological properties of the electronic charge density were analyzed employing Bader's Atoms in Molecules theory (AIM).     

Conformation and coordination of β-diketonates in mixed-ligand copper(II) chelates of 1,2-diamines. Theoretical approach and experimental verification. Crystal structure of [bis(N,N′-dimethyl-1,2-diaminoethane) bis(3-cyano-2,4-pentanedionate)copper(II)]dihydrate

The reaction of the bis(2,4-pentanedionato)copper(II), Cu(acac)₂, and its substituted derivatives (Cu(NC-acac)₂, Cu(O₂N-acac)₂, and Cu(tfac)₂), with 1,2-diaminoethane (en), 1,2-diaminopropane (pn) and certain N-substituted derivatives of 1,2-diaminoethane, enR, is reported. The reaction products were found to depend on the reaction conditions, the extent of N-substitution of the diamine and the nature of the β-diketonate anion, β⁻. The [Cu(enR)β₂] addition compounds are not always sufficiently stable and in most instances the tetragonal species [Cu(enR)₂β₂] prevail as the final product. The 1,2-diamine molecules in [Cu(enR)₂β₂] form chelate rings attaining the gauche conformation while the β-diketonato anions essentially confer electrical neutrality. Density functional theory (DFT) calculations suggest that the active sites of the β-diketonato anion and its conformation depend on their ability to create hydrogen bonds and on the substituents in 3-position. The Fukui indices of chemical reactivity favor the carbonyl oxygens as binding sites of most anions while in the case of the 3-cyano-2,4-pentanedionato anion, NC-acac⁻, bonding through the cyano nitrogen is envisaged with the S(E, Z) conformer having the lowest energy. These findings are in accord with experimental data and further proof is given by single crystal X-ray diffraction analysis of the structure of [Cu(MeenMe)₂(NC-acac)₂] · 2H₂O (MeenMe denoting N,N′-dimethyl-1,2-diaminoethane). In this compound the NC-acac⁻ attains the S(E, Z) conformation and interacts with the square-planar entity [Cu(MeenMe)₂]²⁺ through the cyano nitrogen, while intermolecular hydrogen bonding involving the water molecules leads to supramolecular structure.     

The Structures of Methylenebis(dichloroarsane) and Methylenebisarsonic Acid – A Combined Theoretical and Experimental Study

Methylenebisarsonic acid ( 3 ) was synthesized according to a published procedure. Its molecular structure and its spectroscopic characteristics were determined by single‐crystal X‐ray diffraction. The first intermediate, methylenebis(dichloroarsane) ( 1 ), was structurally and spectroscopically characterized as well. Both molecules were investigated on the B3LYP/6‐31+G(2d,p) level of theory and subsequent NBO analysis.     

Tetrachlorophenyl‐λ5‐arsane and Tetramethoxyphenyl‐λ5‐arsane: Crystal Structures,NMR Spectra and Bonding Situation

Two phenyl‐substituted λ⁵‐arsanes were prepared from phenylarsonic acid in two‐step procedures. Their molecular structures were determined by single‐crystal X‐ray diffraction. NBO analyses for the title compounds were conducted.     

Bis(trifluoromethyl)dicarbonate, CF3OC(O)OC(O)OCF3

The synthesis of the new compound, bis(trifluoromethyl)dicarbonate, CF₃OC(O)OC(O)OCF₃, is carried out by reduction of bis(trifluoromethyl)trioxidicarbonate with excess of CO at 0 °C. The product is characterized by IR, Raman, ¹³C and ¹⁹F NMR spectroscopy and its properties are compared with those of the other members of the series CF₃OC(O)O_xC(O)OCF₃, x = 0-3. Single crystals are grown at −25 °C and the X-ray diffraction analysis shows the packing of syn-syn rotamers exhibiting C₂ symmetry. DFT calculations predict this rotamer as the most stable one and also structural and vibrational data are predicted reasonably well.     

1,4,6,9‐Tetraoxa‐5λ4‐selena‐spiro[4.4]nonane – A Combined Theoretical and Experimental Study

The symmetric spiro‐selenurane derived from ethylene glycol, 1,4,6,9‐tetraoxa‐5λ⁴‐selena‐spiro[4.4]nonane, was prepared from selenium tetrachloride and ethylene glycol and its molecular structure was determined by single crystal X‐ray diffraction. NBO analyses for the title compound and a related compound were conducted to assess the role of the stereochemical active lone pair on the selenium atom on the structure.     

Dimensions of the Ozonide Anion in M([18]crown‐6)O3·x NH3 with M = K (x = 2), Rb (x = 1) and Cs (x = 8)

Reaction of alkali metal ozonides (KO₃, RbO₃ and CsO₃) with [18]crown‐6 in liquid ammonia yields compounds of the composition M([18]crown‐6)O₃·x NH₃ with M = K (x = 2), Rb (x = 1) and Cs (x = 8). The large intermolecular distance between adjacent radical anions in these compounds leads to almost ideal paramagnetic behavior according to Curie's law. Discrepancies concerning the structure of the ozonide anions in the K and Cs compound compared to a former investigation on Rb([18]crown‐6)O₃·NH₃ have been resolved by means of DFT calculations and a single‐crystal structure redetermination.