The induced magnetic field in cyclic molecules

The response of a molecule to an applied external magnetic field can be evaluated by a graphical representation of the induced magnetic field. We have applied this technique to four representative, cyclic organic molecules, that is, to aromatic (C(6)H(6), D(6h)), anti-aromatic (C(4)H(4), D(2h)) and non-aromatic (C(4)H(8), D(4h), and C(6)H(12), D(3d)) molecules. The results show that molecules that contain a pi system possess a long-range magnetic response, while the induced magnetic field is short-range for molecules without pi systems. The induced magnetic field of aromatic molecules shields the external field. In contrast, the anti-aromatic molecules increase the applied field inside the ring. Aromatic, anti-aromatic, and non-aromatic molecules can be characterized by the appearance of the magnetic response. We also show that the magnetic response is directly connected to nucleus-independent chemical shifts (NICS).     

Quantum chemical studies on the conformational behaviour of substituted banana-shaped mesogens with a central 1,3-phenylene unit

Ab initio and DFT calculations on the HF/STO-3G and B3LYP/6-31G(d) level were performed on the conformational behaviour of isolated banana-shaped molecules of 1,3-phenylene bis[4-(4-n-hexyloxyphenyliminomethyl)benzoate] systems (P-6-O-PIMB). The influence of small substituents in both the central phenyl ring and the external phenyl rings on the shape, polarity and flexibility of these molecules was investigated by one- and two-fold relaxed potential energy scans in a systematic way. The effect of substituents on the global polarity of banana-shaped mesogens was analysed by the magnitude and direction of the dipole moment and its components in relation to the long axis of the molecules. Moreover, a simple model for the calculation of the bending angle was tested for banana-shaped molecules with a central 1,3-phenylene unit. The findings for the isolated banana-shaped molecules are correlated with solid state X-ray and liquid crystalline state NMR results. Banana-shaped molecules with both hexyloxy (P-6-O-PIMB) and hexyl (P-6-PIMB) terminal chains are included to study the effect of substituents in the external phenyl rings on the flexibility of these chains. An attempt will be made to correlate the results with experimental findings on banana-shaped mesogens.     

13C and 2H NMR study of structure and dynamics in banana B2 phase of a bent-core mesogen

In this paper, the difficulty in orienting the B(2) phase of the banana mesogen 1,3-Phenylene-bis 4-[4-(10-undecenyloxy)-benzoyloxy] benzoate (Pbis11BB) in a relatively high magnetic field is reported based on some observations using both (13)C and (2)H NMR. (2)H NMR spectra recorded for the two labeled isotopomers of Pbis11BB in the isotropic and B(2) phases are shown here. Preliminary results on the deuteron spin-spin relaxation (T(2)) data are reported at 61 MHz in order to underline the peculiar slow dynamics of banana-shaped liquid crystals (BLC), and these results are discussed in the framework of recent studies on similar BLC. The molecular structure and dynamics in the B(2) and crystalline phases are also studied by (13)C solid-state NMR techniques. The results also point to the slow dynamics in the B(2) phase of Pbis11BB. In particular, two-dimensional MAS exchange experiment has been performed to shed light on the molecular conformation structure of the five-ring banana core in the crystalline phase of Pbis11BB, and to compare with that of quantum mechanical calculations reported in the literature.     

Single-crystal 55Mn NMR spectra of two Mn12 single-molecule magnets

The initial application is reported of single-crystal 55Mn NMR spectroscopy, and associated orientation dependence studies, to single-molecule magnets (SMMs). The studies were performed on two members of the Mn12 family of SMMs, [Mn12O12(O2CMe)16(H2O)4].2MeCO2H.4H2O (Mn12-Ac) and [Mn12O12(O2CCH2Br)16(H2O)4].4CH)Cl) (Mn12-BrAc). Single-crystal spectra give a dramatic improvement in the spectral resolution over oriented powder spectra, allowing the clear observation of quadrupolar splittings, the determination of quadrupole coupling parameters (e2qQ), and an assessment of the symmetry-lowering perturbation of the core of Mn12-Ac by hydrogen-bonding interactions with lattice solvate molecules of crystallization. The results emphasize the utility of single-crystal NMR studies to probe the cores of these magnetic molecules.     

Conformations of banana-shaped molecules studied by 2H NMR spectroscopy in liquid crystalline solvents

ClPbis11BB and Pbis11BB, two banana-shaped mesogens differing by a chlorine substituent on the central phenyl ring, show a nematic and a B2 phase, respectively. To obtain information on the structural features responsible for their different mesomorphic behavior, a study of the preferred conformations of these mesogens has been performed by NMR spectroscopy in two nematic media (Phase IV and ZLI1167), which should mimic the environment of the molecules in their own mesophases, avoiding problems of sample alignment by a magnetic field. To this aim, 2H NMR experiments have been performed on selectively deuterated isotopomers of ClPbis11BB and Pbis11BB and of two parent molecules, ClPbisB and PbisB, assumed as models in previous theoretical and experimental conformational studies. We found that only a limited number of conformations is compatible with experimental data, often very different from those inferred from theoretical calculations in vacuo, indicating a strong influence of the liquid crystalline environment on molecular conformation. No significant differences between chlorinated and non-chlorinated molecules were found, this suggesting that chlorine does not change the molecular conformational equilibrium, as previously proposed.     

DFT and MD studies on the influence of the orientation of ester linkage groups in banana-shaped mesogens

The influence of the direction of ester linkage groups on the structural and electronic properties of five-ring banana-shaped molecules with a central 1,3-phenylene unit has been investigated including hexyloxy and dodecyloxy terminal chains. DFT studies on the B3LYP/6-31G(d) level were performed on the conformational behaviour of the ten isomers in a systematic way. The one- and two-fold potential energy scans show that the flexibility of the wings significantly depends on the orientation of the carboxyl linkage groups. Moreover, the different directions of the carboxyl groups between the aromatic rings cause remarkable changes on the dipole moment and its components of the molecules. These findings are supported by investigations on the global charge pattern of the molecules calculated from electrostatic potential group charges. The bending angle alpha obtained from a simple model for the five-ring bent-core molecules is a characteristic structural parameter which can be correlated with experimental findings. Calculations on the bent-core molecules in an external electric dipole field related to the direction of their polar axis show remarkable effects with respect to the flexibility and polarity of the isomers. First molecular dynamics simulations on the banana-shaped molecules were carried out within the AMBER 7 package. The trajectories of relevant structural parameters support the findings of the DFT studies. The results concerning the structure and polarity revealed from the DFT and MD calculations of the ten isomers can be correlated with data from dielectric measurements and mesophase properties.     

NMR investigation of the dynamics of banana shaped molecules in the isotropic phase: a comparison with calamitic mesogens behaviour

The first translational self-diffusion NMR measurements in the isotropic phase of banana-shaped liquid crystals are reported. In this paper, two banana-shaped mesogens, having a similar molecular structure and showing a nematic phase, have been investigated by means of translational self-diffusion NMR, (2)H NMR spin-spin and (1)H NMR spin-lattice relaxation measurements in the isotropic phase. While (1)H diffusion and (2)H relaxation times reveal a peculiar slow dynamic behaviour of banana-shaped mesogens compared with calamitic mesogens, the (1)H relaxation times seem to be affected by fast dynamics only. The origin of these dynamic features is discussed in terms of overall and internal molecular motions, in the frame of recent speculations concerning the formation of molecular clusters or aggregates in the isotropic phase of banana-shaped liquid crystals.     

Electron delocalization in the metallabenzenes: a computational analysis of ring currents

Many metallabenzene complexes appear to exhibit an enhanced thermodynamic stability which has been attributed to the concept of aromaticity. Analysis of the ring currents induced by a magnetic field, either by direct visualization or by considering nuclear or nucleus-independent chemical shielding values (NMR or NICS), have become useful theoretical tools to characterize the aromaticity of many molecules involving the main group elements. We have analyzed 21 metallabenzenes using variations of these techniques, which take account of the large core and metal orbital contributions which often lead to transition-metal-containing systems exhibiting anomalous shielding values. Analysis of individual orbital contributions to both the ring currents and chemical shielding values based upon the ipsocentric and CSGT (continuous set of gauge transformations) methods has shown that complexes such as the 18 electron Ir or Rh(C 5H 5)(PH 3) 2Cl 2 molecules should be classed as aromatic, whereas the 16 electron complexes such as Os or Ru(C 5H 5)(PH 3) 2Cl 2 should not, despite having the same occupancy of pi-MOs. The differences can be directly attributed to the HOMO/LUMO b 2 in-plane (d xy ) molecular orbital, which, when unoccupied, is available to disrupt the delocalized currents typical of aromatic systems. A range of Pd and Pt metallabenzenes with cyclopentadienyl and phosphine ligands is also discussed as having aromatic and nonaromatic character, respectively.     

Giant porphyrin disks: control of their self-assembly at liquid-solid interfaces through metal-ligand interactions

The synthesis and self-assembly behaviour of porphyrin dodecamers 1H(2) and Zn-1, which consist of twelve porphyrins that are covalently attached to a central aromatic core, is described. According to STM, 1D and 2D NMR studies, and molecular modelling calculations, the porphyrin dodecamers have a yo-yo-shaped structure. Their large pi surface, in combination with their disk-like shape, allows them to form self-assembled structures, which in the case of Zn-1 can be tuned by adding bidentate ligands. The self-assembly of the molecules at the liquid-solid interface of 1-phenyloctane with highly oriented pyrolytic graphite or Au(111) was imaged by using STM. The porphyrin disks in the self-assembled arrays have an edge-on orientation on the surface. The addition of bidentate axial ligands to the Zn-1 molecules in the arrays allows their intermolecular distance to be precisely controlled.     

Behavior of liquid crystals confined to mesoporous materials as studied by 13C NMR spectroscopy of methyl iodide and methane as probe molecules

The behavior of thermotropic nematic liquid crystals (LCs) Merck Phase 4 and ZLI 1115 confined to mesoporous controlled pore glass materials was investigated using 13C nuclear magnetic resonance spectroscopy of probe molecules methyl iodide and methane. The average pore diameters of the materials varied from 81 to 375 A, and the temperature series measurements were performed on solid, nematic, and isotropic phases of bulk LCs. Chemical shift, intensity, and line shape of the resonance signals in the spectra contain lots of information about the effect of confinement on the state of the LCs. The line shape of the 13C resonances of the CH3I molecules in LCs confined into the pores was observed to be even more sensitive to the LC orientation distribution than, for example, that of 2H spectra of deuterated LCs or 129Xe spectra of dissolved xenon gas. The effect of the magnetic field on the orientation of LC molecules inside the pores was examined in four different magnetic fields varying from 4.70 to 11.74 T. The magnetic field was found to have significant effect on the orientation of LC molecules in the largest pores and close to the nematic-isotropic phase transition temperature. The theoretical model of shielding of noble gases dissolved in LCs based on pairwise additivity approximation was utilized in the analysis of CH4 spectra. For the first time, a first-order nematic-isotropic phase transition was detected to take place inside such restrictive hosts. In the larger pores a few degrees below the nematic-isotropic phase transition of bulk LC the 13C quartet of CH3I changes as a powder pattern. Results are compared to those derived from 129Xe NMR measurements of xenon gas in similar environments.     

Correlation between magnetic properties and molecular structure of some metallo-mesogens

The behaviour of a large number of paramagnetic metallo-mesogenic molecules with Cu and VO in different mesophases in a magnetic field was investigated by EPR techniques and magnetic susceptibility measurements. The investigation of the angular dependence of the EPR spectra enabled conclusions to be reached concerning the molecular orientation in the external magnetic field. Temperature dependence magnetic susceptibility measurements were carried out in order to obtain information about the overall susceptibility anisotropy. The good agreement between experimental results and calculated data based on the known increment scheme is obvious. It is shown that the direction of orientation of the molecules in a magnetic field is predetermined by the sum of the anisotropy of the phenyl ring and the chelate core in the molecular structure.     

Combination of an aromatic core and aromatic side chains which constitutes discotic liquid crystal and organogel supramolecular assemblies

This paper reports unique and unusual formations of columnar liquid crystals and organogels by self-assembling discotic molecules, which are composed of an aromatic hexaazatriphenylene (HAT) core and six flexible aromatic side chains. In HAT derivatives 3a, with 4'-(N,N-diphenylamino)biphenyl-4-yl chains, 3b, with 4'-[N-(2-naphthyl)-N-phenylamino]biphenyl-4-yl chains, and 3c, with 4'-phenoxybiphenyl-4-yl chains, the two-dimensional hexagonal packings can be created by their self-assembling in the liquid crystalline phase, which were characterized by polarizing optical microscopy, differential scanning calorimetry, and X-ray diffraction analysis. In certain solvents, HAT molecules 3a-c can form the viscoelastic fluid organogels, in which one-dimensional aggregates composed of the HAT molecules are self-assembled and entangled into three-dimensional network structures. The organogel structures were analyzed by scanning electron microscopy observation, (1)H NMR, UV-vis, and circular dichroism spectroscopy. In contrast to 3a-c, none of the liquid crystalline and organogel phases could be formed from 3d and 3e with short aromatic side chains including a phenylene spacer, and 3f (except a few specific solutions) and 3g without terminal diarylamino and phenoxy groups. In 3a-c, the aromatic side chains with terminal flexible groups make up soft regions that cooperatively stabilize the liquid crystalline and organogel supramolecular structures together with the hard regions of the hexaazatriphenylene core.     

Electrochemical antioxidant detection technique based on guanine-bonded graphene and magnetic nanoparticles composite materials

An antioxidant (AO) amperometric technique based on guanine attached to graphene and Fe(3)O(4) nanoparticles (NPs) magnetic materials was developed. Guanine molecules acted as an antioxidant competitor were bonded with graphene nanosheets, onto which magnetic Fe(3)O(4) NPs were attached and the as-prepared magnetic composite can be attracted to the electrode surface by an external magnetic field. When applied with negative potentials, the dissolved oxygen was reduced to H(2)O(2) at the electrode surface, and then reacted with the EDTA-Fe(ii) complex via a Fenton-like reaction to produce OH radicals. After oxidation damage by OH radicals, the electrochemical oxidation of guanine gave a decreased current. In the presence of AOs, the reactive oxygen species (ROS, e.g. OH radicals and H(2)O(2)) were scavenged by AOs and fewer guanine probe molecules were oxidized, thus inducing a higher electrochemical oxidation current of guanine. So AOs competed with the guanine probe molecules toward oxidation by ROS. The current signals of the guanine probe molecules were proportional to the concentrations of AOs. A kinetic model was proposed to quantify the ROS scavenging capacities of the AOs. Using guanine as an oxidizable probe and OH radicals and H(2)O(2) as endogenous ROS, this kind of AO detection technique mimicks the antioxidant protection mechanism by small AO molecules in the human body.     

Stereoselective synthesis of new vicinal diaminoalkyl naphthols by three component Mannich type reaction of α,β-unsaturated aldehydes

The application of the aromatic Mannich reaction to α,β-unsaturated aldehydes, affords a series of new diaminoalkyl naphthols, by a convenient solventless reaction, starting from inexpensive and easily available starting materials. The absolute configurations of the products obtained are attributed on the basis of the coupling constant values of ¹H NMR spectra, joined with the conformational analysis of the molecules by molecular modelling. A mechanistic hypothesis is proposed, which involves an imino–amino intermediate.     

An NMR and molecular modeling study of carbosilane-based dendrimers functionalized with phenolic groups or titanium complexes at the periphery

Dendrimers are modified polymers whose architecture is defined by the presence of a central atom or core with multiple branches. These molecules lend themselves to a variety of architectures and uses, including drug delivery and catalysis. The study of the molecular conformations and shapes of dendritic molecules is necessary but not yet routine. Here we present an NMR and molecular modeling study of a series of carbosilane dendrimers, namely 1G-{(CH2)3[C6H3(OMe)]OH}4 (1), 2G-{(CH2)3[C6H3(OMe)]OH}8 (2), and 2G-{(CH2)3[C6H3(OMe)]O[Ti(C5H5)Cl2]}8 (3). Various two-dimensional NMR techniques were used to completely assign the 1H and 13C resonances of molecules 1-3. This information was used, in conjunction with 1H and 13C spin-lattice relaxation measurements, to assess the chain motion of the molecules. The NMR data were also compared with 1-ns molecular dynamics (MD) simulations of 1 and 2 using the MMFF94 force field. The results indicate that these dendrimers possess a core that is motionally decoupled from the rest of the dendrimer, with flexible arm segments that extend from the core. The addition of eight functionalized titanium groups to the ends of the dendrimer chains of 2 to yield molecule 3 serves to further restrict chain motion.     

Enhancement of twisting power in the chiral nematic phase by introducing achiral banana-shaped molecules

Achiral banana-shaped molecules with dodecyloxy tail groups, P-12-O-PIMB, N-12-O-PIMB, and S-12-O-PIMB, have exhibited unusual smectic phases which possess chiral and helical structures. In this work, we mixed these banana-shaped molecules with the chiral molecule forming a chiral nematic liquid crystal and found an exclusive effect of the achiral dopant that the twisting power of the chiral nematic phase in the mixtures is significantly increased with the increase of the content of achiral banana-shaped molecules. This characteristic effect in the chiral nematic field seems to offer the rational evidence for the twist conformation of such banana-shaped molecules, since the chirality should be included intrinsically within each chain. The asymmetric twist conformation in the ester linkage group connecting the central core with the side wings is likely to be the origin of enhanced twisting power.     

Probing the exposure of tyrosine and tryptophan residues in partially folded proteins and folding intermediates by CIDNP pulse-labeling

A nuclear magnetic resonance (NMR) technique has been devised to probe the structures of disordered, partially folded states of proteins at the level of individual amino acid residues. Chemically induced dynamic nuclear polarization (CIDNP) is first generated in exposed aromatic side-chains of the denatured state and then transferred to the high-resolution NMR spectrum of the native state by stimulating rapid refolding of the protein. Crucial improvements in sensitivity were achieved by carrying out the polarization-producing photochemistry in a deoxygenated sample of the disordered state of the protein in a magnetic field of 4.0 T and recording the (1)H NMR spectrum of the refolded native state at 9.4 T (400 MHz). Application of this method to the low pH molten-globule state of alpha-lactalbumin reveals remarkably nativelike environments for the aromatic residues in the primary hydrophobic core of the protein. This result provides compelling evidence that the detailed fold of a protein can be established prior to the formation of the cooperative close-packed native structure.     

1H NMR chemical shift calculations as a probe of supramolecular host-guest geometry

The self-assembled supramolecular host [Ga(4)L(6)](12-) (1; L = 1,5-bis[2,3-dihydroxybenzamido]naphthalene) can encapsulate cationic guest molecules within its hydrophobic cavity and catalyze the chemical transformations of bound guests. The cavity of host 1 is lined with aromatic naphthalene groups, which create a magnetically shielded interior environment, resulting in upfield shifted (1-3 ppm) NMR resonances for encapsulated guest molecules. Using gauge independent atomic orbital (GIAO) DFT computations, we show that (1)H NMR chemical shifts for guests encapsulated in 1 can be efficiently and accurately calculated and that valuable structural information is obtained by comparing calculated and experimental chemical shifts. The (1)H NMR chemical shift calculations are used to map the magnetic environment of the interior of 1, discriminate between different host-guest geometries, and explain the unexpected downfield chemical shift observed for a particular guest molecule interacting with host 1.     

Effects of external fields on macromolecular cholesteric phase

Effects of external fields such as magnetic field and boundary conditions on supramolecular structure, molecular arrangement and the texture of the ethyl-cyanoethyl cellulose cholesteric liquid crystalline solutions were investigated. It was found that the molecules of (E-CE)C are oriented to perpendicular to the magnetic field and the diamagnetic anisotropy of (E-CE)C is negative. With homeotropic anchoring boundary condition, the molecules are aggregated with focal-conics arrangement the molecules are aggregated with planar arrangement with homogeneous anchoring boundary condition. The effects of the external field on the orientation of the cholesteric phase were influenced by the concentration of the solution because the twist power of the cholesteric was varied with the concentration. And the effects are also restrains by the surface tension of the interphase.     

Orientation of benzofuran by a magnetic field in an isotropic liquid phase

¹H NMR spectra of solutions of benzofuran in acetone, registered in NMR spectrometers with low (2.35 T) and high (9.36 T) strength of the magnetic field, have been analyzed with high precision. The orientation parameters of benzofuran have been evaluated. The two-spectrometer method gives an adequate accounting for orientation effects in low-symmetry aromatic polycycles in strong magnetic fields.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1214–1219, September, 1995.