Study of <Emphasis Type="Italic">cis</Emphasis>–<Emphasis Type="Italic">trans</Emphasis> isomerization mechanism of 3,3′-azobenzene disulphonate in the lowest singlet and triplet electronic states by density functional theory

Abstract  

The cis–trans isomerization pathways of 3,3′-azobenzene disulphonate in the S₀ and T₁ states are studied by DFT method at the B3LYP/6-31G(d,p) level. In the S₀ state, the cis–trans isomerization concerns the complex pathway that is characterized by the inversion of one NNC angle combined with rotation around the NC bond, and the three sequential transition states are also found on the potential energy profile. Therefore, the cis–trans isomerization of 3,3′-azobenzene disulphonate can be understood in terms of a pathway involving successive rotation, inversion, and rotation processes. The energy barrier of the S₀ state is 22.79 kcal mol⁻¹. In the T₁ state, the isomerization mainly concerns the rotational pathway around the NN double bond, and the two isomers are connected through only one transition state. The isomerization of the T₁ state is related to a lower energy barrier, 5.02 kcal mol⁻¹, but requires a change in spin-multiplicity.     

Thermal isomerization in cyclopenta[<Emphasis Type="Italic">fg</Emphasis>]aceanthrylene

Abstract  Two mechanisms for the isomerization of cyclopenta[fg]aceanthrylene to acefluoranthene were revealed. The first pathway occurs via a cyclobutyl intermediate, whereas the second pathway involves a transition state that contains an sp ³-hybridized carbon atom. Both patterns show that the Stone-Wales rearrangement requires extremely high activation energy and indicate that the isomerization process can occur only under a drastic temperature regime. Graphical abstract        

The solid-state isomerization of cis- and trans-(η5-C5H4Me)Mo(CO)2(P(OiPr)3)I

The cis- and trans-(η⁵-C₅H₄Me)Mo(CO)₂(P(OⁱPr)₃)I complexes undergo a bi-directional thermal ligand isomerization reaction to yield an equilibrium mixture of isomers (30/70 cis/trans ratio, 90 °C, < 80 min) in the solid state. The activation energy barrier for the cis-trans isomerization reaction (80–100 °C) was found to be 68 ± 10 kJ mol^–1. In benzene (reflux, 2 h) this isomer ratio was found to be 70:30 cis/trans. DSC and powder XRD studies have revealed reactions that occur in the solid state entailing decomposition and isomerization. DSC experiments did not reveal the presence of the cis–trans isomerization reaction.     

Thermal isomerization of acetylnitrene: a quantum-chemical study

The electronic structure and pathways of thermal isomerization of formylnitrene and acetylnitrene were studied by the B3LYP/6-311G(d,p) density functional method and ab initio G2(MP2,SVP) computational procedure using the geometries obtained from B3LYP calculations. According to G2 calculations, both nitrenes have singlet ground states while the energies of the corresponding triplet states are 2.8 and 5.7 kcal mol^–1 higher. For acetylnitrene, the activation barrier to the nitrene isocyanate isomerization was estimated at 28.9 kcal mol^–1 (G2). Calculations revealed no pathway for single-step isomerization of nitrene into cyanate in both systems. The formation of methyl cyanate from isocyanate is thermodynamically unfavorable (E = 26.5 kcal mol^–1) and requires a high activation barrier (89.4 kcal mol^–1) should be overcome. Based on the results obtained, the pathways of transformation of nitrene formed in thermal decomposition of acetyl azide (Curtius rearrangement) were analyzed.     

Secondary α-deuterium kinetic isotope effects in [2+4] cycloaddition of (E)-2-phenylnitroethene to cyclopentadiene

Abstract  

Secondary α-deuterium kinetic isotope effects confirm that [2+4] cycloaddition between (E)-2-phenylnitroethene and cyclopentadiene occurs in concerted manner, on both the pathway leading to 6-endo-phenyl-5-exo-nitronorbornene and the pathway leading to the corresponding 6-exo-phenyl-5-endo-nitro isomer. According to Hammond terminology the transition states on competitive pathways should be considered in terms of symmetrical early states.     

An experimental NMR and computational study of 4-quinolones and related compounds

Abstract  

We report the synthesis and structural study of eight compounds, either quinolin-4(1H)-ones or quinolines. Tautomerism as well as (E) → (Z) and rotational isomerism were studied both experimentally (¹H and ¹³C NMR) and theoretically [B3LYP/6-311++G(d,p)].     

Synthesis, characterization, and antifungal activity of biaryl-based bis(1,2,3-triazoles) using click chemistry

Abstract  

Click chemistry was used to synthesize a series of biaryl-based bis(1,2,3-triazoles). Their antifungal activity was evaluated against three soil-borne plant pathogenic fungi, viz. Rhizoctonia bataticola, Sclerotium rolfsii, and Fusarium oxysporum, using the food poison technique at concentrations of 62.5–500 μg/cm³.     

Kinetics and Mechanism of Izomerization of N-Alkoxycarbonyl-5-aroxytetrazoles

The kinetics and mechanism of the N²-N¹-isomerization of 2-methoxycarbonyl-5-(p-X-phenoxy)- tetrazoles (X = H, CH₃, NHCOCH₃, Cl, Br, NO₂) were studied by ¹H NMR spectroscopy in a DMSO-d ₆-CDCl₃ mixture (25:75). The rate of isomerization of the N²-isomer into N¹-isomer fit the first-order equation (after three half-conversion periods). The isomerization is accompanied by hydrolysis and decarboxylation. The Hammett plot of ln(k _X k _H) for the isomerization showed a good correlation with ^- values (^- = 1.33, r = 0.965). A poor correlation with values was obtained. The kinetic data, the effect of solvent polarity, the substituent effects, and the results of AM1 quantum-chemical calculations suggest an ionic mechanism of the isomerization in polar solvents and a concerted mechanism in nonpolar solvents.     

Stability constants of the Li+, Na+, H3O+, NH4+, Ag+, and K+ complexes of the cone conformer of tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate in nitrobenzene saturated with water

Abstract  

From extraction experiments in the two-phase water–nitrobenzene system and γ-activity measurements, the stability constants of the tetraethyl p-tert-butyltetrathiacalix[4]arene tetraacetate (cone)·M⁺ complexes (M⁺ = Li⁺, H₃O⁺, NH₄ ⁺, Ag⁺, or K⁺) were determined in water-saturated nitrobenzene. It was found that these constants increase in the cation order NH₄ ⁺ < K⁺ < H₃O⁺ < Ag⁺ < Li⁺ < Na⁺.     

Isdmerization of Olefins Catalyzed by Silica-Polyalumazine-Palladium Complexes

A silica-supported polyalumazane-palladium complex (abbreviated Al-N-Pd) has been found to be an effective isomerization catalyst for olefins. It can catalyze pentene-1 to pentene-2 in 72% yield and hexene-1 to hexene-2 and hexene-3 in yields of 88 and 12%, respectively, at 0°C and under atmospheric pressure. In investigating the solvent effects on the isomerization of hexene-1 catalyzed by Al-N-Pd, it was found that alcohol probably plays a role as promoter. Kinetic studies on the isomerization of hexene-1 indicate that the rate equation is r = kC^pd C ^hexene-1, where k = 0.82 ± 0.07 (mol Pd-min)^?1. Al-N-Pd is very stable in air and relatively stable during the reaction. The turnover numbers in the isomerization of hexene-1 amount to above 1 000. These results show that the inorganic polymer-supported metal complex Al-N-Pd is more active, selective, and stable than other catalysts for isomerization of α-olefins.     

Thermodynamic data for lanthanoid(III) sequestration by phytate at different temperatures

Abstract  

The results of an investigation on the interactions between phytate ion (myo-inositol hexaphosphate, Phy) and some lanthanoid cations (La³⁺, Nd³⁺, Sm³⁺, Dy³⁺, and Yb³⁺) are reported. The stability constants of various LnH _j Phy species (Ln = generic lanthanoid) were determined by potentiometry (ISE-H⁺ glass electrode) in NaCl_aq at I = 0.15 mol dm⁻³ and t = 25 °C, and the corresponding formation enthalpies by calorimetric titration. The thermodynamic data obtained were used to provide a speciation scheme for the lanthanoid(III)–phytate systems at different temperatures. The sequestering ability of this ligand toward Ln³⁺ was also evaluated by calculation of pL₅₀ values (the total concentration of ligand necessary to bind 50% of a cation present in trace amounts) under different conditions, and equations were formulated to model their dependence on temperature and pH.     

Farnesylation or geranylgeranylation? Efficient assays for testing protein prenylation <Emphasis Type="Italic">in vitro</Emphasis> and <Emphasis Type="Italic">in vivo</Emphasis>

Background  

Available in vitro and in vivo methods for verifying protein substrates for posttranslational modifications via farnesylation or geranylgeranylation (for example, autoradiography with ³H-labeled anchor precursors) are time consuming (weeks/months), laborious and suffer from low sensitivity.     

Theoretical study on the atmospheric formation of sulfur trioxide as the primary agent for acid rain

The reaction mechanism of SO₂ with O₃ on the singlet potential energy surface has been investigated theoretically at the G3MP2B3//B3LYP/6-311+G(3df) level of theory. The reactants are initially associated with adducts IN1(O₂S–OOO) and IN2(OS-cyclic O₄) in a barrier-less process. Subsequently, these adducts undergo isomerization and dissociation processes to produce cis-OSOO + ³O₂, SO₃(C _s ) + ³O₂ and SO₃(D _3h ) + ³O₂ products. The SO₃(D _3h ) + ³O₂ is major product and the cis-OSOO + ³O₂ and SO₃(C _s ) + ³O₂ are minor products. No stable pathway has been found for the formation of trans-OSOO and cyclic-SOOO isomers in the reaction of SO₂ + O₃. For major product, the rate constant of SO₂ + O₃ reaction is 2.30 × 10⁻²³ cm³ molecule⁻¹ s⁻¹, at room temperature and atmospheric pressure.     

Synthesis of unsymmetrical alkyl acetals via addition of primary alcohols to allyl ethers mediated by ruthenium complexes

Abstract  

Ru-catalyzed synthesis of mixed alkyl–alkyl acetals via addition of primary alcohols to allyl ethers has been extended to include long-chain and/or functionalized substrates. The catalytic systems for these reactions were generated from RuCl₂(PPh₃)₃ and [RuCl₂(1,5-COD)]_x and phosphines [PPh₃ or P(p-chlorophenyl)₃] or SbPh₃. Of particular importance is the almost quantitative elimination of transacetalization. The addition proceeds through allyl complexes, not via isomerization of allyl ethers––subsequent addition of ROH to vinyl ethers.     

Synthesis of 5-spirocyclohexyl-2,4-dithiohydantoin derivatives: a potential anti-leishmaniasis agent

Abstract  

A series of spiro-dithiohydantoins were synthesized by heating a mixture of 5-spirocyclohexyl-2,4-dithiohydantoin potassium salt and 3-chloropropanoyl chloride. These compounds were synthesized and evaluated for their activity against five Leishmanial strains in the promastigote stage in vitro. Seventy-two hours inoculation of a variety of products gave an IC ₁₀₀ and average IC ₅₀ values of 1.25 and 0.376 mg/cm³ against all Leishmanial strains tested.     

Na<Superscript>+</Superscript>-stimulated ATPase of alkaliphilic halotolerant cyanobacterium <Emphasis Type="Italic">Aphanothece halophytica</Emphasis> translocates Na<Superscript>+</Superscript> into proteoliposomes via Na<Superscript>+</Superscript> uniport mechanism

Background  

When cells are exposed to high salinity conditions, they develop a mechanism to extrude excess Na⁺ from cells to maintain the cytoplasmic Na⁺ concentration. Until now, the ATPase involved in Na⁺ transport in cyanobacteria has not been characterized. Here, the characterization of ATPase and its role in Na⁺ transport of alkaliphilic halotolerant Aphanothece halophytica were investigated to understand the survival mechanism of A. halophytica under high salinity conditions.     

Analysis of <Emphasis Type="Italic">Escherichia coli</Emphasis> nicotinate mononucleotide adenylyltransferase mutants <Emphasis Type="Italic">in vivo</Emphasis> and <Emphasis Type="Italic">in vitro</Emphasis>

Background  

Adenylation of nicotinate mononucleotide to nicotinate adenine dinucleotide is the penultimate step in NAD⁺ synthesis. In Escherichia coli, the enzyme nicotinate mononucleotide adenylyltransferase is encoded by the nadD gene. We have earlier made an initial characterization in vivo of two mutant enzymes, NadD72 and NadD74. Strains with either mutation have decreased intracellular levels of NAD⁺, especially for one of the alleles, nadD72.     

Novel acenaphthopyrazine derivatives as antitumor agents against MCF-7 cells: molecular synthesis, optical properties, and DNA-binding studies

Abstract  

A series of novel acenaphthopyrazine derivatives was synthesized from acenaphthylene-1,2-dione via three steps, including bromination, cyclization, and S_NAr^H reaction. These new compounds exhibited potential antiproliferative activity against MCF-7 cells in vitro, and 3-[2-(dimethylamino)ethylamino]acenaphtho[1,2-b]pyrazine-8,9-dicarbonitrile exhibited the highest activity (IC ₅₀ = 4.60 μM). DNA-binding experiments suggested that these derivatives bind to DNA through intercalation with intrinsic binding constants K all above 10⁵ M⁻¹. Optical property studies indicated that these compounds have long emission wavelength (λ _em > 560 nm), high quantum yields in toluene (Φ_f = 0.59 for 3-(morpholin-4-yl)acenaphtho[1,2-b]pyrazine-8,9-dicarbonitrile), and large Stokes shift (ΔS > 130 nm).     

Chemistry of chromium bis-acetylide complexes

Abstract  

Stable paramagnetic Cr(II) and Cr(III) bis(alkynyl) complexes of the type [trans(RC≡C)₂Cr(dmpe)₂] ⁿ⁺ (R = Ph, SiMe₃, SiEt₃, C≡C–SiMe₃ n = 0, 1) were prepared and characterised by NMR, cyclic voltammetry, EPR, magnetic measurements, and X-ray single-crystal diffraction studies.     

Thermal properties of potassium bis(oxalato)diaquochromates(III) in solid state. Trans–cis isomerization of the [Cr(C2O4)2(OH2)2]? complex ion in aqueous solutions

The thermal decomposition of trans-K[Cr(C₂O₄)₂(OH₂)₂]·3H₂O and cis-K[Cr(C₂O₄)₂(OH₂)₂] has been studied using the TG–MS technique. The measurements were carried out in an argon atmosphere over the temperature range of 293–873 K. The influence of the complex structures and configurational geometry on the stability of the transition products and the pathways of thermal transformations has been discussed. Furthermore, the kinetics of the isomerization reactions of the [Cr(C₂O₄)₂(OH₂)₂]⁻ complex ion catalyzed by five different metal ions: Be²⁺, Mg²⁺, Ca²⁺, Sr²⁺ and Ba²⁺ have been studied. The isomerization reactions were studied in aqueous solution at five various temperatures (283–303 K), at constant concentration of metal ions (C = 0.1 M) and the constant ionic strength of solution (Na⁺, NO₃ ⁻) I = 2.4 M. The rates of the isomerization reaction were determined spectrophotometrically by monitoring of absorbance changes at 410 nm.