"Fatal adsorption" of brushlike macromolecules: high sensitivity of C-C bond cleavage rates to substrate surface energy

Adsorption-induced degradation of brushlike macromolecules was monitored through molecular imaging by atomic force microscopy. The rate constant for C-C bond cleavage was shown to be extremely sensitive to the substrate surface energy. A few percent increase in the surface energy from 69.2 to 71.2 mN/m led to an order of magnitude increase of the scission rate. The absolute values of the rupture forces ranging from 2.57 to 2.47 nN are in agreement with previously calculated and measured values for stretching surface-tethered molecules.     

Small‐angle neutron scattering analysis of bottlebrush backbone and side chain flexibility

Bottlebrush polymers have densely tethered side chains grafted to a linear polymer backbone, resulting in stretching of both the side chains and backbone. Prior studies have reported that the side chains are only weakly stretched while the backbone is highly elongated. Here, scaling laws for the bottlebrush backbone and side chains are determined through small‐angle neutron scattering analysis of a systematic series of poly(lactic acid) bottlebrush polymers synthesized via a “grafting‐through” ring‐opening polymerization. Scattering profiles are modeled with the empirical Guinier–Porod, rigid cylinder, and flexible cylinder models. Side chains are found to be only weakly stretched, with an end‐to‐end distance proportional to N^0.55, while the overall bottlebrush increases in size proportional to N^0.77. These results demonstrate that the bottlebrush backbone is not fully extended and that both side chains and backbone have significant conformational flexibility in solution. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 104–111     

Thermal Degradation of Adsorbed Bottle-Brush Macromolecules: When Do Strong Covalent Bonds Break Easily?

The scission kinetics of bottle-brush molecules in solution and on an adhesive substrate is modeled by means of Molecular Dynamics simulation with Langevin thermostat. Our macromolecules comprise a long flexible polymer backbone with L segments, consisting of breakable bonds, along with two side chains of length N, tethered to segments of the backbone with grafting density σ_g. In agreement with recent experiments and theoretical predictions, we find that bond cleavage is significantly enhanced on a strongly attractive substrate even though the chemical nature of the bonds remains thereby unchanged. Our simulation results indicate that the mean life time of covalent bonds decreases by more than an order of magnitude upon adsorption even for brush molecules with comparatively short side chains . The distribution of scission probability along the bonds of the backbone is found to change significantly when the length and/or the grafting density of the side chains are varied. The tension, experienced by the covalent bonds is found to grow steadily with increasing σ_g. The mean life time declines with growing contour length L as , and also with growing side chain length N. The probability distribution of fragment lengths at different times is compatible with experimental observations and reveals a two-stage (initially fast, then slow) process with different rates. The variation of the mean length L(t) of the fragments with elapsed time characterizes the thermal degradation process as a first order reaction.     

Design,synthesis and properties of molecular composites of rod-like polymers

Processing and performance of fiber reinforced polymers suffer from problems related to the heterogeneous nature of the composites. The strong impact of the nature of the interface between fibers and matrix adds to the complication of the field. Consequently many attempts have been made to reduce the cross-section of the reinforcing fibers to molecular dimensions and to increase the compatibility between the rod-like molecules or bundles of molecules and the isotropic matrix of ordinary flexible polymers. All such attempts have failed, mainly for reasons of thermodynamics which predict immiscibility of rods and coils on the molecular level. A possibility to create structures in which molecular rods are embedded in a continuous matrix of flexible chain segments exists nevertheless.¹ Rod-like backbone structures decorated with a skin of flexible side chains of moderate length in terms of the number of carbon atoms (typically C₆ - C₁₈-side chains) have been synthesized and tested for the spontaneous formation of molecular composites. Some of the materials built along this principle can be processed by solution casting or even melt extrusion. The academically more interesting materials can be built up layerwise by a modified Langmuir-Blodgett technique. The latter process gives rise to monodomain textures which allow for straight-forward testing of the mechanical properties by optical means (Brillouin-spectroscopy) and by piezoquartz-techniques. Hairy-rod macromolecules can also be synthesized which contain crosslinkable side chains. Thus, after formation of layered, oriented structures, these can be crosslinked photochemically or by curing. The result is a network, which is unidirectionally reinforced by the rod-like macromolecules. These novel types of networks can serve as membranes by which size exclusion is achieved via control of the distance between adjacent backbone molecules in the matrix. Recent synthetic advances in the field have concentrated on hairy-rod macromolecules based on cellulose alkyl ethers and on derivatives of poly-(p-phenylene). The latter materials serve as examples of systems which can be processed by casting and extrusion processes. Due to their excellent thermal stability relevant data on the rheological and mechanical-dynamical data have become available. These data serve to document the unique behavior of the hairy-rod macromolecules as bulk materials.     

A potent, versatile disulfide-reducing agent from aspartic acid

Dithiothreitol (DTT) is the standard reagent for reducing disulfide bonds between and within biological molecules. At neutral pH, however, >99% of DTT thiol groups are protonated and thus unreactive. Herein, we report on (2S)-2-amino-1,4-dimercaptobutane (dithiobutylamine or DTBA), a dithiol that can be synthesized from l-aspartic acid in a few high-yielding steps that are amenable to a large-scale process. DTBA has thiol pK(a) values that are ~1 unit lower than those of DTT and forms a disulfide with a similar E°' value. DTBA reduces disulfide bonds in both small molecules and proteins faster than does DTT. The amino group of DTBA enables its isolation by cation-exchange and facilitates its conjugation. These attributes indicate that DTBA is a superior reagent for reducing disulfide bonds in aqueous solution.     

A UV‐Cleavable Bottlebrush Polymer with o‐Nitrobenzyl‐Linked Side Chains

An ultraviolet (UV)‐cleavable bottlebrush polymer is synthesized using the “grafting‐onto” strategy by combining living radical polymerization and copper‐catalyzed azide‐alkyne cycloaddition (CuAAC). In this approach, reversible addition‐fragmentation chain transfer polymerization is used to prepare a poly(methylacrylate) backbone with azide side groups, while atom transfer radical polymerization is employed to prepare polystyrene (PS) side chains end‐functionalized with o‐nitrobenzyl (UV‐cleavable) propargyl groups. CuAAC is then used to graft PS side chains onto the polymer backbone, producing the corresponding bottlebrush polymers with UV‐cleavable PS side chains. The formation of the bottlebrush polymer is characterized by ¹H nuclear magnetic resonance spectroscopy, gel permeation chromatography (GPC), and Fourier transform infrared spectroscopy. The cleavage behavior of the bottlebrush polymer is monitored in tetrahydrofuran solution under UV irradiation by GPC and viscosity measurements.

     

Chemiluminescence - A Novel Method in the Research of Degradation of Paper. I. The Effect of Light on Stacked Sheets of Paper

Statistical scission of cellulose macromolecules leading to the negative changes in mechanical properties of the paper has been quantified on irradiated stacks of newsprint papers. Attention has been paid to comparison of changes occurring in respective sheets of the stack. The correlation of the results of non-isothermal chemiluminescence method from which the rate constant of paper oxidation has been determined for 105 °C with the changes of carbonyl groups concentration, pH and double folds has been outlined.     

Atomic mechanism of fracture of solid polymers

Macromolecular chain scission under mechanical stress has been studied by infrared spectroscopy. The dependence of accumulation of chemical bond scissions on temperature T and uniaxial tensile stress σ has been investigated. The rate constant K for bond dissociation under mechanical stress has been found to obey the modified Arrhenius equation: K = K₀ exp{ ? (E_A ? ασ)/RA}. The quantitative connection between the rate constant for bond dissociation and mechanical lifetime τ has been established. Analysis of the experimental data indicates that the strength and mechanical lifetime of polymers is determined by the kinetics of mechanochemical scission of the main chains of polymer molecules.     

Self-assembly of polymer brushes in the presence of a surfactant: A system of strands

This theoretical study is focused on the formation of a cylindrical microstructure in a planar polymer brush in the presence of a surfactant. It is assumed that the brush may be nonuniform in the direction along the grafting plane and that there are regions with constant concentrations of monomer units and regions occupied only by the surfactant. The surfactant molecule is simulated by a dimer whose parts interact in a different manner with the monomer units of the polymer. At the interface between these regions, dimer molecules are oriented mainly perpendicularly to this interface and the surface tension is reduced. If the surface energy becomes negative, the formation of a structured brush is more favorable in terms of energy than that of a uniform brush. As a result, there may appear a cylindrical microstructure in which grafted macromolecules are united into strands perpendicular to the grafting plane. The stretching of macromolecules and their interaction with the solvent within the strands are described by the Alexander-de Gennes model, whereas the surface energy is calculated with allowance for the surface curvature of strands at a high degree of amphiphilicity of the surfactant molecules. It is shown that the arising strands have radii of the order of the surfactant-molecule length, while the number of macromolecules per strand is proportional to the surface density of their grafting. With an increase in the grafting density, the strand length increases initially, while the volume fraction of the polymer in a strand remains constant. Furthermore, strands start to shorten and their density grows. Structural characteristics are calculated as a function of the parameter characterizing the degree of amphiphilicity of the solvent molecules, their sizes, and their average energy of interaction with monomer units.     

Addressing the challenges of modeling the scattering from bottlebrush polymers in solution

Small-angle scattering measurements of complex macromolecules in solution are used to establish relationships between chemical structure and conformational properties. Interpretation of the scattering data requires an inverse approach where a model is chosen and the simulated scattering intensity from that model is iterated to match the experimental scattering intensity. This raises challenges in the case where the model is an imperfect approximation of the underlying structure, or where there are significant correlations between model parameters. We examine three bottlebrush polymers (consisting of polynorbornene backbone and polystyrene side chains) in a good solvent using a model commonly applied to this class of polymers: the flexible cylinder model. Applying a series of constrained Monte-Carlo Markov Chain analyses demonstrates the severity of the correlations between key parameters and the presence of multiple close minima in the goodness of fit space. We demonstrate that a shape-agnostic model can fit the scattering with significantly reduced parameter correlations and less potential for complex, multimodal parameter spaces. We provide recommendations to improve the analysis of complex macromolecules in solution, highlighting the value of Bayesian methods. This approach provides richer information for understanding parameter sensitivity compared to methods which produce a single, best fit.     

Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction

It is experimentally challenging to directly obtain structural information of the transition state (TS), the high-energy bottleneck en route from reactants to products, for solution-phase reactions. Here, we use single-molecule experiments as well as high-level quantum chemical calculations to probe the TS of disulfide bond reduction, a bimolecular nucleophilic substitution (S N2) reaction. We use an atomic force microscope in force-clamp mode to apply mechanical forces to a protein disulfide bond and obtain force-dependent rate constants of the disulfide bond reduction initiated by a variety of nucleophiles. We measure distances to the TS or bond elongation (Delta x), along a 1-D reaction coordinate imposed by mechanical force, of 0.31 +/- 0.05 and 0.44 +/- 0.03 A for thiol-initiated and phosphine-initiated disulfide bond reductions, respectively. These results are in agreement with quantum chemical calculations, which show that the disulfide bond at the TS is longer in phosphine-initiated reduction than in thiol-initiated reduction. We also investigate the effect of solvent environment on the TS geometry by incorporating glycerol into the aqueous solution. In this case, the Delta x value for the phosphine-initiated reduction is decreased to 0.28 +/- 0.04 A whereas it remains unchanged for thiol-initiated reduction, providing a direct test of theoretical calculations of the role of solvent molecules in the reduction TS of an S N2 reaction. These results demonstrate that single-molecule force spectroscopy represents a novel experimental tool to study mechanochemistry and directly probe the sub-?ngstr?m changes in TS structure of solution-phase reactions. Furthermore, this single-molecule method opens new doors to gain molecular level understanding of chemical reactivity when combined with quantum chemical calculations.     

Chains are more flexible under tension

The mechanical response of networks, gels, and brush layers is a manifestation of the elastic properties of the individual macromolecules. Furthermore, the elastic response of macromolecules to an applied force is the foundation of the single-molecule force spectroscopy techniques. The two main classes of models describing chain elasticity include the worm-like and freely-jointed chain models. The selection between these two classes of models is based on the assumptions about chain flexibility. In many experimental situations the choice is not clear and a model describing the crossover between these two limiting classes is therefore in high demand. We are proposing a unified chain deformation model which describes the force-deformation curve in terms of the chain bending constant K and bond length b. This model demonstrates that the worm-like and freely-jointed chain models correspond to two different regimes of polymer deformation and the crossover between these two regimes depends on the chain bending rigidity and the magnitude of the applied force. Polymer chains with bending constant K>1 behave as a worm-like chain under tension in the interval of the applied forces f ≤ Kk(B)T/b and as a freely-jointed chain for f ≥ Kk(B)T/b (k(B) is the Boltzmann constant and T is the absolute temperature). The proposed crossover expression for chain deformation is in excellent agreement with the results of the molecular dynamics simulations of chain deformation and single-molecule deformation experiments of biological and synthetic macromolecules.     

Ab initio and QM/MM study of electron addition on the disulfide bond in thioredoxin

Thioredoxin controls the intracellular redox potential through a disulfide/dithiol couple. Under conditions of oxidative stress, this protein functions via one-electron exchange, in which formation of the disulfide radical anion occurs. Combined quantum mechanical (QM) and molecular mechanical (MM) calculations using two- and three-level ONIOM schemes were performed on the thioredoxin (Trx) protein of Chlamydomonas reinhardtii in its oxidized-disulfide and one-electron-reduced forms. In both cases, the active site disulfide moiety was described at the MP2(fc)/6-31+G(d) level, and larger regions of varying sizes around the active site were described at the B3LYP/6-31+G(d) level. The remainder of the 112 residues and 33 water molecules of the crystal structure (PDB entry 1EP7) were described by the AMBER force field. Adiabatic electron affinities were calculated for the disulfide bond in all systems. Separate QM or QM/QM calculations were performed on the QM regions to establish the role of the remainder of the protein on the active site properties. The radical anion species becomes more stable as the number of amide groups in the vicinity increases. One-electron reduction potentials were calculated for the small molecule models, and approximated for the protein for which the values are similar to the experimental one (approximately 0 V). This high reduction potential is due to interaction with the charged end of Lys40, as indicated by mutation in silico to norleucine. The inclusion of the protonated Asp30 side chain and a water molecule in the QM region leads to an increase in the electron affinity. Proton transfer from the Asp30 side chain to the Cys39 sulfur in the radical anion species is strongly disfavored. The radical anion is more stable than the protonated form, which is consistent with experimental results.     

Energetics of low-molecular-mass products of mechanical fracture of poly(methyl methacrylate)

It is experimentally revealed that monomer and water molecules released during the fracture of PMMA have a bimodal velocity distribution. The first distribution peak for the monomer corresponds to energetic (hot) MMA molecules (0.13–0.70 eV), and the second peak is attributed to MMA molecules bearing a low energy (0.016–0.060 eV). On the basis of the results of earlier theoretical studies of the mechanically induced polymer-chain scission, it was concluded that the energetic monomer molecules are produced immediately in the event of mechanical chain rupture and are nonthermal in nature. In the bimodal velocity distribution of occluded water molecules desorbed from a subsonic crack, the first and the second peaks are attributed to “hot” and “cold” molecules with translational temperatures of 605 ± 180 K and 53 ± 5 K, respectively. A possible mechanism of the mechanically induced desorption of occluded water is discussed. The mechanodesorption of water molecules is due to the portion of vibrational energy transferred to side methyl carboxylate groups that retain water molecules by the unloading-wave front traveling along the main chain from a macromolecule scission site. Along with hot water molecules, a considerable amount of hot free hydroxyls were detected. The mechanism of formation of the latter species is associated with the double-well structure of the hydrogen bond potential and similar to the mechanism of mechanodesorption of hot molecules of water.     

Surface forces between bottlebrush polymer layers

In this review, I summarize recent experimental investigations of surface and friction forces between bottlebrush structure macromolecules including biolubricants and biomimetic ones by direct force measurements. I also discuss recent experimental investigations of synergy in lubrication in which a question, ‘How do lubricants act together?’, is aimed to be answered. Lastly, challenges and opportunities for developing efficient lubricating systems are outlined.     

Synthesis and Guest-Binding Properties of pH/Reduction Dual-Responsive Cyclophane Dimer

A water-soluble cyclophane dimer having two disulfide groups as a reduction-responsive cleavable bond as well as several acidic and basic functional groups as a pH-responsive ionizable group 1 was successfully synthesized. It was found that 1 showed pH-dependent guest-binding behavior. That is, 1 strongly bound an anionic guest, 6-p-toluidinonaphthalene-2-sulfonate (TNS) with binding constant (K/M⁻¹) for 1:1 host-guest complexes of 9.6 × 10⁴ M⁻¹ at pH 3.8, which was larger than those at pH 7.4 and 10.7 (6.0 × 10⁴ and 2.4 × 10⁴ M⁻¹, respectively), indicating a favorable electrostatic interaction between anionic guest and net cationic 1. What is more, release of the entrapped guest molecules by 1 was easily controlled by pH stimulus. Large favorable enthalpies (ΔH) for formation of host-guest complexes were obtained under the pH conditions employed, suggesting that electrostatic interaction between anionic TNS and 1 was the most important driving force for host-guest complexation. Such contributions of ΔH for formation of host-guest complexes decreased along with increased pH values from acidic to basic solutions. Upon addition of dithiothreitol (DTT) as a reducing reagent to an aqueous PBS buffer (pH 7.4) containing 1 and TNS, the fluorescence intensity originating from the bound guest molecules decreased gradually. A treatment of 1 with DTT gave 2, having less guest-binding affinity by the cleavage of disulfide bonds of 1. Consequently, almost all entrapped guest molecules by 1 were released from the host. Moreover, such reduction-responsive cleavage of 1 and release of bound guest molecules was performed more rapidly in aqueous buffer at pH 10.7.     

Kinetics of a polysoap collapse

We study the dynamics of collapse of a polysoap by means of large-scale molecular dynamics simulation and scaling arguments. A polysoap consists of a hydrophilic backbone and hydrophobic side chains attached at regular intervals along the backbone. In selective solvent conditions, the hydrophobic components aggregate, forcing the hydrophilic backbone to form loops anchored at the surface of the core, ultimately forming a micelle. The kinetics of polysoap collapse includes two major mechanisms: (1) early aggregation of the hydrophobic side chains controlled by first-order kinetics whose rate constant is given by a contact probability and (2) coalescence into larger clusters which requires activation to overcome energy barriers due to excluded volume repulsions between intermediate micelle coronas. In the late stage, the energy barrier is increasing as p(3/2), with p the number of aggregated side chains in an intermediate micelle. The corresponding late-stage rate constant decays exponentially as approximately exp(-p(3/2)).     

EPR study of spin labeled brush polymers in organic solvents

Spin-labeled polylactide brush polymers were synthesized via ring-opening metathesis polymerization (ROMP), and nitroxide radicals were incorporated at three different locations of brush polymers: the end and the middle of the backbone, and the end of the side chains (periphery). Electron paramagnetic resonance (EPR) was used to quantitatively probe the macromolecular structure of brush polymers in dilute solutions. The peripheral spin-labels showed significantly higher mobility than the backbone labels, and in dimethylsulfoxide (DMSO), the backbone end labels were shown to be more mobile than the middle labels. Reduction of the nitroxide labels by a polymeric reductant revealed location-dependent reactivity of the nitroxide labels: peripheral nitroxides were much more reactive than the backbone nitroxides. In contrast, almost no difference was observed when a small molecule reductant was used. These results reveal that the dense side chains of brush polymers significantly reduce the interaction of the backbone region with external macromolecules, but allow free diffusion of small molecules.     

Maxwell and Kerr effects in solutions of linear dendritic macromolecules

The linear dendritic polymers of the first and second generations have been investigated by the methods of flow birefringence and equilibrium and nonequilibrium electric birefringence. The side dendrons are attached to the polymer backbone through benzamide groups and contain long terminal hexyloxycarbonyl fragments. Optical, dynamic, dipolar, and conformational characteristics of the macromolecules in question have been analyzed in detail. It has been found that the macromolecules of dendritic polymers with dendrons based on L-aspartic acid possess permanent dipole moments and reorient in external electric and hydrodynamic fields according to the large-scale rotation mechanism. The introduction of rigid benzamide fragments substantially increases the equilibrium rigidity, optical anisotropy, and dipole moment of monomer units of dendritic macromolecules. The role of macro-and microform effects in the formation of optical features of the molecules under study is considered in detail.