Intramolecular Hypervalent X←X Interaction in Heteropentalene Compounds Containing S and O Atoms

Chalcogen-containing heteropentalene and quasimonocyclic compounds having O–O–O and S–S–S triads or O–O and S–S diads were studied by the ab initio [MP2(full)/6-31G** and MP2(fc)/ 6-31+G**] and DFT (B3LYP/6-31G**) methods. The oxygen-containing compounds are characterized by strong O···O repulsion which destabilize the pentalene structure. The molecule of 3-thioxo-1-propenesulfenyl fluoride, in contrast to 3-mercapto-2-propenethial, is more stable in the cis-s-cis conformation with an appreciably shortened S–S contact [2.274 Å (MP2), 2.503 Å (B3LYP)] which approaches the length of a standard S–S covalent bond.     

Hypervalent Intramolecular X←N (X = C,Si, Ge) Coordination in Atranes: Quantum-Chemical Study

The structure and pentacoordination effect in atranes containig Group IVa element were studied ab initio [MP2(full)/6-31G**] and in terms of the density functional theory [B3LYP/6-311+G**]. Stabiliza- tion of these compounds is determined mainly by the secondary hypervalent (R)XN bond (X = C, Si, Ge), whose strength increases in the series X = C, Si, Ge. Attractive (R)XN interaction originates from donation of unshared electron pair on the nitrogen atom to the antibonding ^* _XR orbital.     

Hypervalent Intramolecular N→Si Interaction in [Methoxy(methyl)silyl] Derivatives of 8-Mercaptoquinoline: Structural and Spectral Criteria

Russian Journal of General Chemistry - Quantum-chemical study (B3PW91/6-311G** and MP2/6-311G**) of structural and spectral criteria of the intramolecular coordination bond N→Si existence in...     

Intramolecular O→Te and N→Te coordination bonds in molecules of β-tellurocyclohexenals and their nitrogen analogs

The structures of -tellurocyclohexenals and their nitrogen analogs, viz., -methyltellurocyclohexenal (6), -(4-ethoxyphenyltelluro)cyclohexenal (7), di(2-formylcyclohexen-1-yl) telluride (8), -(4-ethoxyphenyltelluro)cyclohexenylidene(4"-methylaniline) (9), -bromotellurenylcyclohexenylidene(4"-methylaniline) (10), and -bromotellurenylcyclohexenal (4-methylbenzoyl)hydrazone (11), were studied by X-ray diffraction analysis. Compounds 6—11 have a Z configuration at the double bond, which provides the formation of intramolecular OTe or NTe coordination bonds. The bonds about the Te atom have a T-shaped configuration. There is only one of two possible OTe coordination bonds in dialdehyde 8 and, consequently, this compound belongs to the 10-Te-3-tellurane structural type. Hydrazone 11 possesses both NTe and OTe intramolecular coordination bonds. Taking into account these interactions, the coordination polyhedron of the tellurium atom can be considered as a trigonal bipyramid. The intramolecular OTe or NTe coordination bond lengths in compounds 6 (2.692 ), 7 (2.657 ), 8 (2.657 ), and 9 (2.690 ) are 0.9—1.0 smaller than the sums of the van der Waals radii of the corresponding atoms. These bond lengths in compounds 10 (2.170 ) and 11 (2.203 ) are almost equal to the standard covalent bond length.     

Synthesis of Bromochloropolyfluorobiphenyls Containing Bromine and Chlorine Atoms in the 4 and 4,4′ Positions

Russian Journal of General Chemistry - A new method for the synthesis of 4-chlorononafluoro- and 4-bromononafluorobiphenyl by the reactions of nonafluorobiphenyl-4-thiol with Cl2, PCl5, and Br2, as...     

Newer Aspects in Synthetic Methodology of Pyridyl Chalcogen (E═Se/Te) Compounds

Abstract

A number of synthetic protocols for the synthesis of symmetrical dipyridyl chalcogenides/dichalcogenides have successfully been developed by employing cheap, economically viable and eco-friendly reagents. The reductive cleavage of Se–Se and Te–Te bond in these versatile compounds conveniently have been achieved and a number of hitherto unknown chelating seleno/telluro ethers with varying back bones have been prepared employing appropriate alkylating agents.     

Chiral Ligands in Hypervalent Iodine Compounds: Synthesis and Structures of Binaphthyl-Based λ3-Iodanes

Several novel binaphthyl-based chiral hypervalent iodine(III) reagents have been prepared and structurally analysed. Various asymmetric oxidative reactions were applied to evaluate the reactivities and stereoselectivities of those reagents. Moderate to excellent yields were observed; however, very low stereoselectivities were obtained. NMR experiments indicated that these reagents are very easily hydrolysed in either chloroform or DMSO solvents leading to the limited stereoselectivities. It is concluded that the use of chiral ligands is an unsuccessful way to prepare efficient stereoselective iodine(III) reagents.     

The IX (X=O,N,C) Double Bond in Hypervalent Iodine Compounds: Is it Real?

I X (X=O, N, C) bonding was analyzed in the related hypervalent iodine compounds based on the adaptive natural density partitioning (AdNDP) approach. The results confirm the presence of a I→X σ dative bond, as opposed to the widely used IX notation. A clear formulation of the electronic structure of these hypervalent iodine compounds would be useful in establishing reaction mechanisms and electronic structures in bioinorganic problems of general applicability.     

Quantum-chemical Investigation of the Hyprevalent Intramolecular Coordination X←N (X = C,Si, Ge) in Quasimonocyclic Models of IVa Group Atranes

The structure and the pentacoordination effect in quasimonocyclic models of IVa group atranes were investigated by ab initio[MP2 (full) /6-311+G **] and the density functional [B3LYP/6-311+G **] quantum chemical calculations. The calculations revealed considerable stabilization of the quasimonocyclic conformations relative to their free-of-strain trans-s-transconformations, which is caused by the formation of secondary (R)XN (X=C, Si, Ge) bonds of the hypervalent type. The strength of the intramolecular (R)XN coordination increases in the order X=C, Si, Ge. The nature of attractive (R)XN coordination is determined by donor-acceptor interaction of the nitrogen lone electron pair and antibonding orbital which primary localize at the X-R bond. Energy of X ··· N (X=Si, Ge) contact is about 3-7 kcal mol^-1.     

The IX (X=O,N,C) Double Bond in Hypervalent Iodine Compounds: Is it Real?

I? X (X=O, N, C) bonding was analyzed in the related hypervalent iodine compounds based on the adaptive natural density partitioning (AdNDP) approach. The results confirm the presence of a I→X σ dative bond, as opposed to the widely used I?X notation. A clear formulation of the electronic structure of these hypervalent iodine compounds would be useful in establishing reaction mechanisms and electronic structures in bioinorganic problems of general applicability.     

Electronic Structures and Optical Properties of HgGa_2X_4 （X=S,Se,Te）Semiconductors

The first-principles density functional calculations are performed to study the geometries and electronic structures of HgGa2X4（X = S,Se,Te） semiconductors with defect chalcopyrite structures,and the optical properties of all crystals are investigated systematically.The results indicate that these compounds have similar band structures and the band gap decreases from S to Se to Te.For the linear optical properties,three crystals show good light transmission in the IR and part visible regions,and in particular,HgGa2S4 and HgGa2Se4 crystals possess moderate birefringence.For the nonlinear optical properties,these crystals have stronger second harmonic generation（SHG）,and are theoretically predicted to have larger second-order static SHG coefficients（ 30 pm/V）.The SHG of HgGa2X4（X = S,Se,Te） semiconductors can be attributed to the transitions from the bands near the top of valence band derived from X（X = S,Se,Te） p states to the unoccupied bands contributed by the p states of Ga atoms.Our results indicate that the HgGa2S4 and HgGa2Se4 compounds are good candidates for nonlinear optical crystals in the IR region.     

Extended Hypervalent 5c–6e Interactions: Linear Alignment of Five C─Z- - -O- - -Z─C (Z = S,Se) Atoms in Anthraquinone and Anthracene Systems

Abstract

Structures of 1,8-(ArZ)₂C₁₄H₆O₂ and 9-(MeO)-1,8-(ArZ)₂C₁₄H₇ (Z = S, Se) are determined by X-ray crystallographic analysis. Five C─Z- - -O- - -Z─C atoms of the compounds align linearly, which are analyzed by the extended hypervalent 5c–6e model, based on QC calculations. CT of the 5c–6e occurs as the σ^*(C─Z) ← n _p (O)→ σ*(Z─C) direction.     

Intramolecular Nonbonded Interactions Between Oxygen and Group VIA Elements: An Ab Initio Molecular Orbital and Density Functional Theory Investigation of the Structures of HX—CH2—COOH (X=S,Se, and Te)

Ab initio molecular orbital and density functional methods have been used to study the potential energy surfaces of the substituted acetic acids HX—CH₂—COOH, where X is one of the Group VIA Chalcophiles S, Se, or Te. The various conformers adopted by these compounds provide information regarding the energetic importance of nonbonded and hydrogen bonding interactions involving oxygen atoms with different hybridizations. Density functional and ab initio molecular orbital methods yield similar structural and energetic trends for these compounds. Calculations show that the structure of the lowest-energy conformer of each of these acids has the X—C—C—O backbone substantially twisted from planarity, similar to that previously observed for the corresponding aldehydes, HX—CH₂—CHO. In the twisted acid structures the shortest distance is within about 0.1 Å of the sum of the X and O van der Waals radii, which reduces overcrowding of the lone pairs of electrons on these atoms. In conformers where the heavy atom backbone is planar, one of the distances is significantly shorter than the sum of the van der Waals radii, and the total molecular energy of these conformers is higher than that of the twisted forms. The variation of X—H vibrational frequencies among conformers reflects the extent of X—H hydrogen bonding, and indicates that formation of this hydrogen bond is not the dominant factor in determining the lowest-energy conformation. When X is oxygen (HO—CH₂—COOH), the lowest-energy conformer is also nonplanar, whereas for the corresponding aldehyde, HO—CH₂—CHO, the lowest-energy conformer is a planar structure with C_S symmetry. The conformational preferences of these simple species provide reference points for inter- and intramolecular interactions in more complex systems of biological interest.     

Determination of total Sb,Se, Te,and Bi and evaluation of their inorganic species in garlic by hydride-generation–atomic-fluorescence spectrometry

A sensitive and simple analytical method has been developed for determination of Sb(III), Sb(V), Se(IV), Se(VI), Te(IV), Te(VI), and Bi(III) in garlic samples by using hydride-generation–atomic-fluorescence spectrometry (HG–AFS). The method is based on a single extraction of the inorganic species by sonication at room temperature with 1 mol L⁻¹ H₂SO₄ and washing of the solid phase with 0.1% (w/v) EDTA, followed by measurement of the corresponding hydrides generated under two different experimental conditions directly and after a pre-reduction step. The limit of detection of the method was 0.7 ng g⁻¹ for Sb(III), 1.0 ng g⁻¹ for Sb(V), 1.3 ng g⁻¹ for Se(IV), 1.0 ng g⁻¹ for Se(VI), 1.1 ng g⁻¹ for Te(IV), 0.5 ng g⁻¹ for Te(VI), and 0.9 ng g⁻¹ for Bi(III), in all cases expressed in terms of sample dry weight.     

Intramolecular N−H⋅⋅⋅F Hydrogen Bonding Interaction in a Series of 4-Anilino-5-Fluoroquinazolines: Experimental and Theoretical Characterization of Electronic and Conformational Effects

The 4-anilino-6,7-ethylenedioxy-5-fluoroquinazoline scaffold is presented as a novel model system for the characterization of the weak NH⋅⋅⋅F hydrogen bonding (HB) interaction. In this scaffold, the aniline NH proton is forced into close proximity with the nearby fluorine (d_H,F∼2.0 Å, ∠∼138°), and a through-space interaction is observed by NMR spectroscopy with couplings (^1hJ_NH,F) of 19±1 Hz. A combination of experimental (NMR spectroscopy and X-ray crystallography) and theoretical methods (DFT calculations) were used for the characterization of this weak interaction. In particular, the effects of conformational rigidity and steric compression on coupling were investigated. This scaffold was used for the direct comparison of fluoride with methoxy as HB acceptors, and the susceptibility of the NH⋅⋅⋅F interaction to changes in electron distribution and resonance was probed by preparing a series of molecules with different electron-donating or -withdrawing groups in the positions para to the NH and F. The results support the idea that fluorine can act as a weak HB acceptor, and the HB strength can be modulated through additive and linear electronic substituent effects.     

Intramolecular Y←O (Y = N,P, As,Sb, Bi) coordination in organopnictogen compounds: an ab initio and DFT study

The molecular structure and rearrangements of -pnictogenovinylaldehydes and 1,6-dioxa-6a⁵-pnictapentalenes (Pn = N, P, As, Sb, and Bi) were studied using the ab initio and DFT approach. According to calculations, the quasi-cyclic conformation of -pnictogenovinylaldehyde molecules is much more stable than their free of strain, trans-s-trans conformation. This stabilization is achieved due to the formation of a rather strong secondary PnO bond of the hypervalent type. Bicyclic structures of 1,6-dioxa-6a⁵-pnictapentalenes (Y = P, As) with the three-center, four-electron hypervalent O—Y—O bonds are more energetically favorable than isomeric sterically unstrained monocyclic structures. The strength of the intramolecular coordination bonds (R)YO in -pnictogenovinylaldehydes and of the hypervalent bonds O—Y(R)—O in 1,6-dioxa-6a⁵-pnictapentalenes increases in the order Y = N, P, As, Sb, and Bi and with an increase in the electronegativity of the substituent R = H, Cl, and F. In contrast to their chalcogen-containing analogs, the above-mentioned quasi-cyclic and bicyclic structures of organopnictogen compounds possess low aromatic character.     

Correlated ab initio calculations of one-bond 31P?77Se and 31P?125Te spin–spin coupling constants in a series of PSe and PTe systems accounting for relativistic effects (part 2)

Synthetic chalcogen–phosphorus chemistry permanently makes new challenges to computational Nuclear Magnetic Resonance (NMR) spectroscopy, which has proven to be a powerful tool of structural analysis of chalcogen–phosphorus compounds. This paper reports on the calculations of one-bond ³¹P ⁷⁷Se and ³¹P ¹²⁵Te NMR spin–spin coupling constants (SSCCs) in the series of phosphine selenides and tellurides. The applicability of the combined computational approach to the one-bond ³¹P ⁷⁷Se and ³¹P ¹²⁵Te SSCCs, incorporating the composite nonrelativistic scheme, built of high-accuracy correlated SOPPA (CC2) and Coupled Cluster Single and Double (CCSD) methods and the Density Functional Theory (DFT) relativistic corrections (four-component level), was examined against the experiment and another scheme based on the four-component relativistic DFT method. A special J-oriented basis set (acv3z-J) for selenium and tellurium atoms, developed previously by the authors, was used throughout the NMR calculations in this work at the first time. The proposed computational methodologies (combined and ‘pure’) provided a reasonable accuracy for ³¹P ⁷⁷Se and ³¹P ¹²⁵Te SSCCs against experimental data, characterizing by the mean absolute percentage errors of about 4% and 1%, and 12% and 8% for selenium and tellurium species, respectively. The present study reports typical relativistic corrections to ⁷⁷Se ³¹P and ¹²⁵Te ³¹P SSCCs, calculated within the four-component DFT formalism for a broad series of tertiary phosphine selenides and tellurides with different substituents at phosphorus.     

Comparison between Roesy and 13C NMR Complexation Shifts in Deriving the Geometry of Inclusion Compounds: A Study on the Interaction between Hyodeoxycholic Acid and 2-Hydroxypropyl-β-Cyclodextrin

Abstract

The formation and geometry of the hyodeoxycholic acid (HDCA)/2-hydroxypropyl-β-cyclodextrin (HPβCD) complex in methanol-d₄ solution was determined through a rotating frame nuclear Overhauser (ROESY) experiment. The reported results confirmed those independently and previously obtained though the use of ¹³C complexation shifts in the same solvent. The ¹³C approach, which needs shorter experimental times and is currently used in the study of HPβCD/bile acid systems, was then substantiated.     

Tris(tert-butyl)phosphine selenide,the missing link in tris(tert-butyl)­phosphine chalcogenide structures tBu3P=X (X = O,S, Se,Te)

In tris(tert-butyl)­phosphine selenide, C₁₂H₂₇PSe, all the methyl ligands are disordered over two sites in the ratio 70/30. The mol­ecule displays crystallographic C₃ symmetry. The bond angles at the P atom are distorted tetrahedral [C—P—C 110.02 (5)° and Se=P—C 108.91 (5)°]. The P—C and P=Se bond lengths are 1.908 (1) and 2.1326 (6) Å, respectively. A comparison of the structural data of the complete series of tris(tert-butyl)­phosphine chalcogenides (^tBu₃PO, ^tBu₃PS, ^tBu₃PSe and ^tBu₃PTe) with the corresponding data of other phosphine chalcogenides substituted by smaller organic groups shows the great influence of the bulky tert-butyl ligands.