Multiply charged ions of ruthenium(II), rhodium(III) and cobalt(III) complexes in electrospray ionization mass spectrometry

Multiply charged ions from electrospray ionization (ESI) were observed for ruthenium-bidentate ligand complexes, such as [RuL₂B]X₂ and [(RuL₂)₂B]X₄, where L is 2,2′-bipyridine, B are tetradentate ligands of 2,2′-bis(2′-pyridyl)bibenzimidazole and 2,6-bis(2′-pyridyl)benzodiimidazole, bidentate ligand of 2-(2′-pyridyl)benzimidazole and related compounds and X is CIO₄^- or CI^-. ESI mass spectra showed a simple mass pattern for easy structural assignment and detecting impurities. The mass spectra for binuclear complexes provide a charge state distribution ranging from 4+ to 2+ for Ru(II)—Ru(II) compounds and 5+ to 2+ for Ru(II)—Rh(III) compounds. It was found that different multiply charged ions are generated by loss of counterions and by protonation/deprotonation at the proton site of ligands B. The abundances of these ions are qualitatively explained in terms of the acidity of metal complexes depending on the bridging ligand structures and the charge of the metal ions. Ions produced by removal of ligands were hardly observed.     

Zn^2＋ Recognition by Two New Bipyridine Ligands

IntroductionThehighsensitivityandselectivityofmolecularfluores cenceorluminescencehavebeenwidelyutilizedinmonitoringH+ ,Ca2 + ,Na+ ,Mg2 + ,andotherimportantcationoran ionionsinbiologicalorenvironmentalsystems.Duetothesensitiveresponseofluminescenceuponmicroenviromentalchanges (e .g .polarityofsolvent,pH ,thepresenceofions) ,bipyridinecomplexesofRe(I)andRu(II)withmetaltoligandchargetransferexcitedstatesconstitutealargefami lyofchemicalsensors.1 5Intheseprobingmolecules ,theco operationofthe…     

Elucidating Factors Manipulated the Formation of Multiply Charged Protein Homomultimeric Complexes by Electrospray Ionization

Native non‐covalently bonded protein‐protein and protein‐substrate complexes are of great interest and have been extensively studied by electrospray ionization mass spectrometry (ESI‐MS). Multiply charged protein homomultimeric complexes are shown to form by ESI‐MS. This study addresses factors that can artificially induce the formation of multiply charged protein homomultimeric complexes. Cytochrome c (Cyt c) and ubiquitin, which are monomers in solution, were found to generate (Cyt c)_mⁿ⁺ by electrospray ionization (ESI). The homomultimeric complexes were not limited to dimeric complexes but include also multiply charged trimers, tetramers, and pentamers. The observation of these homomultimeric complexes has never been revealed from a Cyt c solution at the concentration as low as 10 μM. Increasing the concentration of Cyt c enhanced the formation of (Cyt c)_mⁿ⁺ as expected; however, the protein concentration does not affect the relative intensities of monomeric and dimeric complexes. Additionally the enrichment of NH₄OH also promotes the formation of (Cyt c)_mⁿ⁺. Notably, source collision‐induced dissociations (source‐CID) of (Cyt c)_mⁿ⁺ alter the charge state distribution (CSD) and may lead to an incorrect interpretation of Cyt c conformations. Hence, extra care should be taken when using CSD to interpret the conformation of a protein derived from ESI‐MS.     

Electrospray mass and tandem mass spectrometry of homologous and isomeric singly, doubly, triply and quadruply charged cationic ruthenated meso-(phenyl)m-(meta- and para-pyridyl)n (m + n = 4) macrocyclic porphyrin complexes

Ten homologous or isomeric singly, doubly, triply and quadruply charged cationic macrocyclic complexes I-Va, bn+ (n = 1-4) formed by the coordination of [Ru(bipy)2Cl]+ to the pyridyl N-atoms of a series of meso-(phenyl)m-(meta or para-pyridyl)n-porphyrins (m + n = 4) were transferred to the gas phase and structurally characterized by electrospray ionization (ESI) mass (MS) and tandem mass (MS/MS) spectrometry. Previously known to be stable in solution and in the solid state, I-Va, bn+ are found to constitute also a new class of stable, long-lived multiply charged gas-phase ions with spatially separated charge sites. Increasing intramolecular electrostatic repulsion from Ia, b+ to IVa, b3+ facilitates in-source and tandem collision-induced dissociation (CID). However, for the quadruply charged ions Va, b4+, electrostatic repulsion is alleviated mainly by ion pairing with the CF3SO3- counterion forming the salt clusters [Va,b/CF3SO3]3+ and [Va,b/(CF3SO3)2]2+ with reduced charge states. Ion-pairing that yields [IVa,b/CF3SO3]2+ is also observed as a minor ESI process for the triply charged ions IVa, b3+. The gaseous ions I-Va, bn+ (n = 2, 3 or 4) dissociate by sequential 'charge partitioning' with the formation of two cationic fragments by the release of [Ru(bipy)2Cl]+. The meta (a) and para (b) isomers and the positional isomers II2+ and III2+ display nearly identical ESI-MS and ESI-MS/MS spectra. ESI-MS/MS of I-Va, bn+ shows that the Ru-py(P) is, intrinsically, the weakest bond since this bond breaks preferentially upon CID.     

Conformer selection of protein ions by ion mobility in a triple quadrupole mass spectrometer

Electrospray mass spectra of multiply charged protein molecules show two distinct charge state distributions proposed to correspond to a more highly charged, open conformational form and a lower charged, folded form. Elastic collisions carried out in the radiofrequency-only collision cell of a triple quadrupole mass spectrometer have dramatic effects on the appearance of the mass spectra. The different cross sectional areas of the conformers allow preferential selection of one charge state distribution over the other on the basis of ion mobility. Preferential selection is dependent on the nature and pressure of the target gas as well as the nature of the protein. In the case of positively charged horse heart apomyoglobin (MW 16,951 da), a high charge state distribution centered around (M + 20H)²⁰⁺ predominates at low target gas pressures and a second distribution centered around (M + 10H)¹⁰⁺ predominates at high target gas pressures. Bimodal distributions are observed at intermediate pressures and, remarkably, charge states between the two distributions are not effectively populated under most of the conditions examined. Hard sphere collision calculations show large differences in collision frequencies and in the corresponding kinetic energy losses for the two conformational states and they demonstrate that the observed charge state selectivity can be explained through elastic collisions.     

Uncoupled analysis of secondary and tertiary protein structure by circular dichroism and electrospray ionization mass spectrometry

Electrospray ionization mass spectrometry (ESI-MS) applied to protein conformational studies is a powerful new method that seems to provide specific information about protein tertiary structure. In this study, we analyzed the effect of trifluoroethanol (TFE) on a myoglobin peptide and cytochrome c (cyt c) at low pH by circular dichroism (CD) and ESI-MS. These experiments show that coil-to-helix transition per se does not affect ESI mass spectra, confirming that this technique is insensitive to the local conformation of the polypeptidic chain and, rather, reports on the tertiary contacts characterizing different protein conformations. This property makes ESI-MS an excellent method, complementary to CD, for the characterization of protein conformational changes. Fluorinated alcohols have been suggested to induce molten globule formation in acid-unfolded cyt c. The experiments described here show that TFE does not induce major changes in the ESI mass spectrum of cyt c at pH 2.2, indicating that no stabilization of compact, globular structures is detectable under the conditions employed. On the other hand, even low concentrations of TFE (2-5%) are shown to destabilize the folded state of the protein around the mid-point of its acid-induced unfolding transition.     

Using electrospray ionization mass spectrometry to explore the interactions among polythymine oligonucleotides, ethidium bromide, and mercury ions

We have used electrospray ionization mass spectrometry (ESI-MS) and fluorescence and circular dichroism (CD) spectroscopy to explore the binding of ethidium bromide (EthBr) to non-self-complementary polythymine (polyT) strands in the absence and presence of Hg²⁺ ions. In the gas phase, ESI-MS revealed that Hg²⁺ ions have greater affinity, through T-Hg²⁺-T coordination, toward polyT strands than do other metal ions. These findings are consistent with our fluorescence and CD results obtained in solution; they revealed that more T₃₃-EthBr-Hg²⁺ complexes existed upon increasing the concentrations of Hg²⁺ ions (from 0 to 50 μM). Surprisingly, the ESI-MS data indicated that the Hg²⁺ concentration dependence of the interaction between T₃₃ and EthBr is biphasic. Our ESI-MS data revealed that the T₃₃-EthBr-Hg²⁺ complexes formed with various stoichiometries depending on their relative concentrations of the components and the length of the DNA strand. When the concentrations of T₃₃/EthBr/Hg²⁺ were 5/5/2. 5 μM and 5/10/7. 5 μM, 1:1:1 and 1:1:2 T₃₃-EthBr-Hg²⁺ complexes were predominantly formed, respectively. Thus, Hg²⁺-induced DNA conformational changes clearly affect the interactions between DNA and EthBr.     

Mass spectra of doubly charged ions

The mass spectra of biological molecules, whose molecular mass exceeds 10 kDa, invariably contain multiply charged ions. For example, a survey scan of a small protein will produce singly, doubly and triply protonated molecules, the intensity of the doubly charged species often being greater than that of the singly charged entity. Although the spectra resulting from doubly charged peptides have not previously been studied, collisional activation of such doubly charged species may result in significant additional information pertaining to molecular structure. The techniques employed to study ions originating from multiply charged species were linked scanning of constant B/E and tandem mass spectrometry, namely low collision energy spectra acquired on a BEQQ hybrid instrument. The methodology was applied to model compounds whose tandem mass spectrometry characteristics are well known, e.g. gramicidin S and angiotensin I. The results for the product ions of the [M + 2H]²⁺ species of the models were obtained which highlight the methodology required for high-mass materials.     

Two new fluorescent Zn2+ sensors exhibiting different sensing mode with subtle structural changes

Two novel receptors HL-1 and HL-2 without and with hydroxyl groups were designed and synthesised. Both receptors showed highly selective coordination towards Zn²⁺ and exhibited diverse sensing behaviour due to the structural variations. HL-1 showed monotonous ‘turn-on’ response towards Zn²⁺ while HL-2 displayed highly Zn²⁺ sensitive ‘turn on’ and ‘ratiometric’ properties. Detailed Job plot experiment, single crystal data, ¹H NMR, ESI-MS, UV–vis and density functional theory calculation studies were conducted to understand the binding modes of HL-1 and HL-2 with Zn²⁺. These results revealed the binding stoichiometric ratio between receptors and Zn²⁺ were 1:1 with low detection limits and high binding constants.     

Solvent-induced conformational changes of polypeptides probed by electrospray-ionization mass spectrometry.

Electrospray-ionization (ESI) mass spectrometry is used to monitor higher order structural changes of polypeptides induced by alteration of the pH or organic solvent composition in the protein solution environment. A bimodal charge-state distribution is observed in the ESI mass spectrum of ubiquitin (relative molecular mass 8565) in solutions containing small amounts (less than 20%) of organic solvents. The distribution of peaks at high m/z (low-charge state) is found to represent the protein in its native, globular state; the higher-charge-state distribution is characteristic for a more extended conformation. Addition of methanol denaturant in excess of 40% v/v is needed to eliminate the low-charge-state distribution completely. Lesser amounts of acetonitrile, acetone, or isopropanol (approximately 20%) are required to denature the ubiquitin protein. Other proteins showing conformational effects in their ESI mass spectra are also illustrated. While the ESI spectra are related to solution phase structure, ESI-tandem mass spectrometry of multiply charged molecular ions of different conformation is suggested as a probe of gas-phase protein three-dimensional structure.     

光谱法研究金属离子与肿瘤抑制蛋白p53的DNA结合结构域的相互作用

利用荧光滴定法研究了9种金属离子与序列特异性的DNA结合结构域(p53DBD)的结合反应,其结合能力依次为Fe3+＞Zn2+＞Cu2+＞Ca2+＞Mg2+＞Ba2+＞Mn2+＞Ni2+＞Co2+.圆二色谱研究结果表明,Ba2+, Ca2+, Co2+, Mn2+及Ni2+并未引起蛋白二级结构变化; Zn2+, Mg2+及Fe3+诱导蛋白结构细微调整;而Cu2+结合导致蛋白螺旋结构大量丢失.ANS结合研究结果表明, Mg2+与Zn2+相似,诱导p53DBD蛋白表面疏水性增强,而Fe3+引起p53DBD蛋白表面疏水性降低.因此,Mg2+和Fe3+可能是影响或调节p53活性的潜在因子之一.     

FT-ICRMS distinguishes the mechanism of the charge state reduction for multiply charged protein cations admixed with redox reagents in ESI

Recently, we reported on a phenomenon in which multiply charged protein cations produced by electrospray ionization could be reduced to lower and narrower charge state distributions when admixed with reducing reagents 1,4-benzoquinone or quinhydrone. Circular dichroism spectra of the proteins indicated that secondary and tertiary structural changes upon addition of these reducing reagents were negligible, thus eliminating conformational effects as playing a role in the charge reduction mechanism. Furthermore, the extent of charge state reduction did not correspond with gas-phase basicities of the redox reagents, suggesting that solution-phase, and not gas-phase, behavior dominates the observed charge state reduction. The relatively low resolution of the triple quadrupole employed did not make it possible to distinguish isotopic distributions of the multiply charged cations in order to determine whether the observed phenomenon was the result of proton-transfer reactions between the multiply charged cations and the reducing reagent or because of electron transfer from the reducing reagent to the protein cations. Here, high-resolution ESI-Fourier transform ion cyclotron resonance mass spectrometry of several peptide amides in the presence of a redox reagent show isotopic distributions that are consistent only with the proton-transfer mechanism.     

锌离子存在下槲皮素、杨梅素与牛血清蛋白的结合

采用荧光、紫外及红外等光谱方法研究了在水溶液中锌离子对槲皮素、杨梅素与牛血清蛋白(BSA)相互作用的影响。槲皮素和杨梅素均能使BSA的荧光发生淬灭,表明两种药物与BSA发生了结合。锌离子的加入则能进一步导致BSA的荧光淬灭,同时,使BSA的特征发射光谱产生了显著的蓝移,其中锌离子对杨梅素的影响甚于槲皮素,表明锌离子的存在能够显著影响两种药物与BSA的相互作用,其影响的程度与药物分子结构中B环的羟基数相关。定量计算表明,加入锌离子后2种药物与BSA间的结合常数显著降低、结合位点数减小。红外和紫外吸收光谱结果显示,锌离子与槲皮素、杨梅素发生了配位反应,形成了新的配合物。可以推断,在锌离子存在下,槲皮素和杨梅素与BSA的结合在很大程度上分别是两种药物的锌配合物与其相互作用,槲皮素、杨梅素等黄酮类药物B环羟基数的增加能够使药物与BSA的结合能力增强,而锌离子的存在反而使其结合能力减弱。     

Automated deconvolution and deisotoping of electrospray mass spectra

Electrospray ionization (ESI) of peptides and proteins produces a series of multiply charged ions with a mass/charge (m/z) ratio between 500 and 2000. The resulting mass spectra are crowded by these multiple charge values for each molecular mass and an isotopic cluster for each nominal m/z value. Here, we report a new algorithm simultaneously to deconvolute and deisotope ESI mass spectra from complex peptide samples based on their mass-dependent isotopic mean pattern. All signals corresponding to one peptide in the sample were reduced to one singly charged monoisotopic peak, thereby significantly reducing the number of signals, increasing the signal intensity and improving the signal-to-noise ratio. The mass list produced could be used directly for database searching. The developed algorithm also simplified interpretation of fragment ion spectra of multiply charged parent ions.     

Investigation of calcium-induced, noncovalent association of calmodulin with melittin by electrospray ionization mass spectrometry

Noncovalent association of Ca²⁺-loaded calmodulin with a target peptide melittin was studied by electrospray ionization mass spectrometry (ESI-MS). ESI-MS does not reveal any binding of the apocalmodulin to the melittin. Partial loading of calmodulin with calcium leads to weak association with melittin. Upon binding of two calcium ions to the protein, changes in the conformation of calmodulin occur; these changes are sufficient to promote binding of melittin. Saturation of the protein with Ca²⁺ (a distribution of up to seven calcium ions is detected) induces a large increase of the binding to melittin. The stoichiometry of peptide binding to calmodulin is 1:1.     

Polarizability and inductive effect contributions to solvent–cation binding observed in electrospray ionization mass spectrometry

Electrospray ionization (ESI) mass spectrometry (MS) has been used in conjunction with computer modeling to investigate binding tendencies of alkali metal cations to low molecular weight solvents. Intensities of peaks in ESI mass spectra corresponding to solvent-bound alkali metal cations were found to decrease with increasing ionic radii (Li⁺ > Na⁺ > K⁺ > Cs⁺) in either dimethylacetamide (DMAc) or dimethylformamide (DMF). When a lithium or sodium salt was added to an equimolar mixture of DMF, DMAc, and dimethylpropionamide (DMP), the intensities of gas-phase [solvent + alkali cation]⁺ peaks observed in ESI mass spectra decreased in the order DMP > DMAc ≫ DMF. A parallel ranking was obtained for alkali metal cation affinities in ESI-MS/MS experiments employing the kinetic method. These trends have been attributed to a combination of at least three factors. An inductive effect exhibited by the alkyl group adjacent to the carbonyl function on each solvent contributes through-bond electron donation to stabilize the alkali metal cation attached to the carbonyl oxygen. The shift in the partial negative charge at the oxygen binding site with increasing n-alkyl chain length (evaluated via computer modeling), however, cannot fully account for the mass spectrometric data. The increasing polarizability and the augmented ability to dissipate thermal energy with increasing size of the solvent molecule are postulated to act in conjunction with the inductive effect. Further evidence of these contributions to solvent–cation binding in ESI-MS is given by the relative intensities of [solvent + Li]⁺ peaks in mixtures containing equimolar quantities of alcohols, indicating preferential solvation of Li⁺ in the order n-propanol > ethanol > methanol. These experiments suggest a combined role of polarizability, the inductive effect, and solvent molecule size in determining relative intensities of solvated cation peaks in ESI mass spectra of equimolar mixtures of homologous solvents.     

Studies on the non‐covalent interactions between cyclodextrins and aryl alkanol piperazine derivatives by mass spectrometry and fluorescence spectroscopy

The non‐covalent complexes of α‐ and β‐cyclodextrins (α‐, β‐CDs) with two aryl alkanol piperazine derivatives (Pipe I and Pipe II) have been studied by electrospray ionization mass spectrometry (ESI‐MS) and fluorescence spectroscopy. The ESI‐MS experimental results demonstrated that Pipe I can conjugate to β‐CD and form 1:1 or 1:2 stoichiometric non‐covalent complexes, and Pipe II can only form 1:1 complexes with α‐ or β‐CD. Fluorescence spectra indicated that the fluorescence intensities of Pipe I and Pipe II can be enhanced by increasing the content of β‐CD. The mass spectrometric titration experiments showed that the dissociation constants K_d1 were 5.77 and 9.52 × 10^?4 mol L^?1 for the complexes of α‐CD with Pipe I and Pipe II, respectively, revealing that the binding of α‐CD‐Pipe I was stronger than α‐CD‐Pipe II. The K_d1 and K_d2 values were 9.81 × 10^?4 mol L^?1 and 1.11 × 10^?7 (mol L^?1)² for 1:1 and 1:2 complexes of Pipe I with β‐CD, respectively. The K_d values obtained from fluorescence spectroscopy were in agreement with those from ESI‐MS titration. Copyright © 2010 John Wiley & Sons, Ltd.     

Ratiometric fluorescent determination of Zn(II): a new class of tripodal receptor using mixed imine and amide linkages

We synthesized a novel receptor with a unique combination of sp² nitrogen (-CHN-) and carbonyl groups from amide linkages. These two moieties are judiciously incorporated into the receptor design such that these sites simultaneous binding a metal ion may generate a stable five-member ring. The receptor has been used to selectively detect Zn²⁺ through changes in the fluorescence spectra. Upon Zn²⁺ binding with the receptor, the fluorescence band shifted to enhance fluorescence intensity, allowing ratiometric determination of Zn²⁺ concentration.     

Structural Characterization of a Zinc High‐affinity Binding Site in Rhodopsin†

For the first time to our knowledge, X‐ray absorption spectroscopy (XAS) has been used to investigate the environment of putative Zn²⁺ binding sites in rhodopsin. We studied native purified nondeionized rhodopsin without any further addition of Zn²⁺, as well as with 1.5 mol of Zn²⁺—as zinc chloride—per mole of protein. Three different binding sites in rhodopsin were considered based on computational chemistry studies, and a quantitative analysis of the XAS signal was performed by fitting the experimental data to their simulated XAS spectra. Our results demonstrate that Zn²⁺ is intrinsically bound to rhodopsin and are compatible with the existence of an octahedral coordination involving six oxygen atoms in the first shell (average Zn‐O distance of 2.08 Å), and with a second coordination shell containing one or two phosphorus or sulfur atoms at an average distance of 2.81 Å.