N-烷基化聚对苯二甲酰对苯二胺梳状高分子中烷基侧链对刚性主链堆积行为的影响

基于聚对苯二甲酰对苯二胺(PPTA), 采用N-烷基化方法制备了系列PPTACns(烷基侧链碳原子数n=8, 10, 12, 14, 16, 18)刚性主链梳状高分子, 利用DSC, XRD和FTIR等方法研究了其主链堆积行为、 分子链构象及热性能等与烷基侧链长度及结晶特性之间的关系. XRD和DSC结果表明, 当烷基侧链碳原子数达到14时, 烷基侧链发生结晶. XRD结果显示, PPTACns具有层状结构, 烷基侧链长度对主链层间距影响显著. FTIR研究发现, 烷基侧链的聚集状态对PPTACns分子链的构象产生较大影响, 伴随着烷基侧链结晶的熔融, PPTACns的分子链构象发生显著改变. 烷基侧链处于熔融状态的PPTACns的ν_C=O和γ_C-H谱带峰位与烷基侧链不结晶的PPTACn接近.     

Backbone effects on the anchoring of side-chain polymer liquid crystals

By comparing the anchoring behaviour of (end-on) side chain polymer liquid crystals with that of the corresponding low molecular mass liquid crystals, we have studied the effect of the backbone on the anchoring of side chain polymer liquid crystals. We can distinguish two different effects: the loss of rotational freedom of the side groups and the interaction of the polymer chain with the surface. In the case of free surfaces, we can formulate a general rule stating that compounds with side groups ending with an aliphatic chain (at least four carbon atoms long) exhibit a homeotropic anchoring, and compounds with side groups ending with a polar group exhibit a planar anchoring.     

On the shape of bottle-brush macromolecules: systematic variation of architectural parameters

We measured the form factor of bottle-brush macromolecules under good solvent conditions with small-angle neutron scattering and static light scattering. The systems under investigation are brushes, synthesized via the grafting-from route, built from a poly(alkyl methacrylate) backbone to which poly(n-butyl acrylate) side chains are densely grafted. The aim of our work is to study how the systematic variation of structural parameters such as the side chain length and backbone length change the conformation of the polymer brushes in solution. All spectra can be consistently described by a model, considering the bottle-brush polymers as flexible rods with internal density fluctuations. Parameters discussed are (1) the contour length per main chain monomer l(b), (2) the fractal dimension of the side chains Ds, as well as (3) the fractal dimension D, and (4) the Kuhn length lambdak of the overall brush. l(b)=0.253+/-0.008 nm is found to be independent of the side chain length and equal to the value found for the bare main chain, indicating a strongly stretched conformation for the backbone due to the presence of the side chains. The fractal dimension of the side chains is determined to be Ds=1.75+/-0.07 which is very close to the value of 10.588 approximately 1.70 expected for a three-dimensional self-avoiding random walk (3D-SAW) under good solvent conditions. On larger length scales the overall brush appears to be a 3D-SAW itself (D=1.64+/-0.08) with a Kuhn-step length of lambdak=70+/-4 nm. The value is independent of the side chain length and 46 times larger than the Kuhn length of the bare backbone (lambdak=1.8+/-0.2 nm). The ratio of Kuhn length to brush diameter lambda(k)d>or=20 determines whether lyotropic behavior can be expected or not. Since longer side chains do not lead to more persistent structures, lambda(k)d decreases from 8 to 4 with increasing side chain length and lyotropic behavior becomes unlikely.     

A stereochemical test of a proposed structural feature of the nicotinic acetylcholine receptor

Understanding the gating mechanism of the nicotinic acetylcholine receptor (nAChR) and similar channels constitutes a significant challenge in chemical neurobiology. In the present work, we use a stereochemical probe to evaluate a proposed pin-into-hydrophobic socket mechanism for the alphaVal46 side chain of the nAChR. Utilizing nonsense suppression methodology we incorporated isoleucine (Ile), O-methyl threonine (Omt) and threonine (Thr) as well as their side chain epimers (the allo counterparts). Surprisingly, our results indicate that only the pro-S methyl group of the alphaVal46 side chain is sensitive to changes in hydrophobicity, consistent with the precise geometrical requirements of the pin-into-socket mechanism.     

Studies on the Syntheses of the Side Chains of Brassinolide and Dolicholide

(4R,5S)-2,2-Dimethyl-4-(1',2'-dimethylpropyl)-5-(1'-bromoethyl)--1,3-dioxolane(15) with the side chain of brassinolide and (4R, 5S)--2, 2-dimethyl-4-(l'-methylene-2'-methylpropyl)-5-(1'-bromoethyl) 1,3-dioxolane(14) with the side chain of dolicholide were first synthesized through 11 and 10 stepes from D-mannitol respectively. All of the intermediates 7-13 were first synthesized too.     

Quantitative analysis of the structure-hydrophobicity relationship for di- and tripeptides based on voltammetric measurements with an oil/water interface

The transfer of 18 di- and 27 tripeptides with un-ionizable amino acid side chains at a nitrobenzene/water (NB/W) interface was studied by cyclic voltammetry. The reversible half-wave potential (E(r)(1/2)), i.e., the midpoint potential could be accurately determined at pH 2 for both the facilitated and non-facilitated transfers, respectively, in the presence and absence of dibenzo-18-crown-6 (DB18C6) in NB. A multiple linear regression analysis was then performed for the E(r)(1/2) using the 'corrected' Dubois steric parameter for amino acid side chain substitutents. The result shows that the hydrophobicity of the peptides is governed not only by the intrinsic hydrophobicity of the peptide backbone and side chains, but also by the steric effects of side chain substituents. For the non-facilitated transfer of peptides, the steric effect of a bulky side chain is more significant at the N-terminus than at the C-terminus (and central for tripeptides). The more bulky the side chain at the N-terminus, the less hydrophobic the peptide becomes due to inhibition of the solvation of a terminal -NH(3)(+) group by organic solvents. For the facilitated transfer by DB18C6, however, the steric effect of a bulky side chain is the most significant at the central position of a tripeptide. A MOPAC calculation of optimized structures of DB18C6-peptide complexes has also shown that there is a notable steric hindrance between the central side chain and the benzene rings of DB18C6, which would reduce the 'apparent' hydrophobicity or transferability of the tripeptide.     

Lipase specificity for the hydrolysis of poly (vinyl acetate)

The effect of lipases on the side chain hydrolysis of poly (vinyl acetate) (PVAc) was investigated in toluene by various lipases, Hog-pancreas (HP), Candida Rugosa (CR), Lipolase-100T (LL), and Novozyme 435 (NV) at 60 °C. Gas chromatographs and GC–MS spectra showed the presence of different ester side chains. The different size side chain esters in PVAc get hydrolyzed at different specific rates by the various lipases. Longer side chains are hydrolyzed in the order HP>NV>LL>CR whereas the short chains are hydrolyzed in the reverse order. A continuous distribution kinetics model was proposed that accounts for lipase deactivation and determines the rate coefficients of hydrolysis of various chain lengths. Lipase deactivation and hydrolysis rate coefficients were determined for each case. The proposed model predicts the experimental data satisfactorily.     

Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed beta-hairpin "trpzip2"

The interaction geometries of the four tryptophan (Trp) side chains in the 12-residue designed beta-hairpin trpzip2 are investigated using all-atom explicit-solvent molecular dynamics simulations. The experimentally observed edge-to-face (EtF) pairwise interaction geometries are stable on a time scale of 10 ns. However, removing the electrostatic multipoles of the Trp side chains while retaining the dipoles of the side chains' NH moieties induces a conformational change to a geometry in which three of the four side chains interact in a parallel-displaced (PD) manner. Free energy simulations of the Etf to PD conformational change reveal that, with the side chain multipole moments intact (+MP), the EtF conformation is preferred by 5.79 kcal/mol. Conversely, with only the dipole moments of the side chain NH moieties intact (-MP), the PD conformation's free energy is more favorable by 1.71 kcal/mol. In contrast to energetic similarities for Trp side chain-water electrostatic and Trp side chain-Trp side chain and Trp side chain-water van der Waals, +MP Trp side chain-Trp side chain electrostatic interactions are more favorable by 4.21 kcal/mol in the EtF conformation, while in the -MP case the EtF and PD conformations' Trp side chain-Trp side chain electrostatic energies are nearly identical. The results highlight the importance of electrostatic multipole moments in determining aromatic-aromatic interaction geometries in aqueous biomolecular systems and argue for the inclusion of this physics in simplified models used for protein-ligand docking and protein structure prediction, possibly through a truncated Coulomb term between aromatic moieties.     

Structure and mobility of a series of poly(alkyl l-glutamate)s studied by VT 13C CPMAS NMR spectroscopy

VT CPMAS NMR measurements were carried out for a series of poly(alkyl l-glutamate)s (PALG) which have n-alkyl side chains with carbon numbers ranging from 2 to 12 in order to investigate the structure and mobility of the main and the side chains. From the temperature dependencies of the peak intensities for the PALGs, the relative mobilities of the main and side chains are discussed. For PG-2 and PG-4, the molecular motions of both the main and side chains are not very fast. From the amount ratio between the main and side chains, the main chain dominates the entire mobility of the polymer. As the side chain length increases, the side chain motion is drastically activated by a temperature change. In addition, the main chain motion is induced by the side chain motion. For PALGs with long alkyl side chains, the mobilities of the polymers are governed by the structure and mobility of the side chain.     

Fabrication of well‐defined shape memory graft polymers derived from biomass: An insight into the effect of side chain architecture on shape memory properties

Fully sustainable shape memory polymers (SMPs) derived from ethyl cellulose (EC, derived from cellulose), tetrahydrofurfuryl methacrylate (THFMA, derived from furfural), and lauryl methacrylate (LMA, derived from fatty acids) were prepared via “grafting from” atom transfer radical polymer (ATRP). The “grafting from” ATRP strategy allows to fabricate SMPs with EC as a backbone, and LMA and THFMA copolymer as a side chain. By utilizing the one‐pot and sequential monomer addition approach, two types of SMPs with random/semi‐block side chain architectures were obtained, respectively. Random/semi‐block side chain architecture of SMPs was confirmed by DSC, DMA, SAXS, and TEM. The presence of microphase separation in the SMPs with semi‐block side chain architecture provided two distinct thermal transitions, which was needed for triple‐shape memory behavior. Shape memory study showed that SMPs with semi‐block side chain architecture exhibited excellent triple‐shape memory property, and also had higher shape recovery speed and shape recovery ratio than those with random side chain architecture. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 1711–1720     

Molecular level structures of poly(n-alkyl methacrylate)s with different side chain lengths at the polymer/air and polymer/water interfaces

Sum frequency generation (SFG) vibrational spectroscopy has been successfully applied to study molecular structures of several poly(n-alkyl methacrylate)s (PAMAs) with different side chain lengths at the PAMA/air and PAMA/water interfaces. We have observed that the ester side chains from all PAMAs always dominate the interface, but the orientation information of the methyl end group on the side chains varies, depending on the length of the side chain. The contributions from methylene groups on the side chains have been evaluated, and the surface structures have been related to the surface tension of these polymers. Different water restructuring behaviors have been observed for different PAMAs. This phenomenon and its reversibility are strongly dependent on the glass transition temperature of each polymer, which is influenced by the side chain length. Detailed data fitting and analysis has been discussed.     

Experimental and theoretical investigations of the loss of amino acid side chains in electron capture dissociation of model peptides

Loss of side chains from different amino acid residues in a model peptide framework of RGGGXGGGR under electron capture dissociation conditions were systematically investigated, where X represents one of the twenty common amino acid residues. The alpha-carbon radical cations initially formed by N-Calpha cleavage of peptide ions were shown to undergo secondary dissociation through losses of even-electron and/or odd-electron side-chain moieties. Among the twenty common amino acid residues studied, thirteen of them were found to lose their characteristic side chains in terms of odd-electron neutral fragments, and nine of them were found to lose even-electron neutral side chains. Several generalized dissociation pathways were proposed and were evaluated theoretically with truncated leucine-containing models using ab initio calculations at B3-PMP2/6-311++G(3df,2p)//B3LYP/6-31++G(d,p) level. Elimination of odd-electron side chain was associated with the initial abstraction of the hydrogen from the alpha-carbon bearing the side chain by the N-terminal alpha-carbon radical. Subsequent formation of alpha-beta carbon-carbon double bond leads to the elimination of the odd-electron side chain. The energy barrier for this reaction pathway was 89 kJmol-1. This reaction pathway was 111 kJmol-1 more favorable than the previously proposed pathway involving the formation of cyclic lactam. Elimination of even-electron side chain was associated with the initial abstraction of the gamma-hydrogen from the side chain by the N-terminal alpha-carbon radical. Subsequent formation of beta-gamma carbon-carbon double bond leads to the elimination of the even-electron side chain and the migration of the radical center to the alpha-carbon. The energy barrier for this fragmentation reaction was found to be 50 kJmol-1.     

Surface properties of poly(N-monoalkylmaleamic acid-alt-styrene) sodium salts: effect of the molecular weight and the side chain length

The surface properties of poly(N-monoalkylmaleamic acid-alt-styrene) sodium salts are studied as a function of the molecular weight and the size of the linear alkyl lateral chain of the polyelectrolyte. The experimental results are well described by the Gibbs-Szyszkowski treatment. Both the surface tension behavior and the standard free energy of adsorption depend on the polyelectrolyte side chain and on the average molecular weight, M(w). An M(w)-dependent contribution to the free energy of adsorption ranging from -1.21 to -1.05 kJ for mole of methylene groups is found. The area covered by monomer units increases with M(w) and the sizes of side chains are similar to those reported in small-molecule systems. The nature of the functional group amide in the side chain has practically no effect on the surface properties as compared with the ester group in this kind of polyelectrolytes.     

N8H8链状异构体结构与稳定性的理论研究

采用密度泛函理论(DFT), 在B3LYP/6-311＋＋G(d,p)基组上计算得到了21种N₈H₈链状异构体, 并研究了这些异构体间可能的互变异构情况. 为了得到更为精确的能量信息, 计算了QCISD(T)/6-311G(d,p)基组水平上各物质的能量. 所得的21种异构体分为4类(4种类型链状化合物): A为直链, B有一个支链, C有2个支链, D有3个支链; D类只有一种, A类稳定构型2种, B类稳定构型12种, C类稳定构型6种; 相对稳定的分别为: B2-1构型, B2-3构型和C23-2构型. 我们研究发现N₈H₈链状异构体中含有明显N＝N双键特征有利于化合物稳定性的提高.     

Liquid crystalline homopolyesters having main chain calamitic mesogens and one or two side chain azobenzene moieties in the repeat units

Combined semi-rigid homopolyesters, containing both main chain calamitic mesogens and one or two side chain azobenzene units separated by aliphatic (hexamethylene, octamethylene and decamethylene) chains in the polymer repeat units, were prepared and their liquid crystalline properties characterized. Polyesters having two side chain azobenzene units and a main chain biphenyl moiety showed a higher ordered smectic B or smectic F phase, whereas the other polymers containing a main chain 2,5-diphenyl-1,3,4-thiadiazole unit and one or two side chain methoxyazobenzene units formed a smectic C phase despite the presence of different mesogens in the main and side chains. This is probably due to the compact molecular chain-packing and intra- and intermolecular interactions between the polymer backbones and the two azobenzene units.     

Configuration of the psymberin amide side chain

[structure: see text] The structure of the amide side chain of psymberin, a potent and selective cytotoxin, is proposed. Syn and anti models of the amide side chain were prepared, and the structural assignment was confirmed by X-ray crystallographic analysis of the anti isomer. Comparison of (1)H and (13)C NMR data establishes homology between the natural product and the synthetic model compound of anti configuration and not the corresponding syn isomer.     

Structural and energetic effects in the molecular recognition of protonated peptidomimetic bases by 18-crown-6

Absolute 18-crown-6 (18C6) affinities of nine protonated peptidomimetic bases are determined using guided ion beam tandem mass spectrometry techniques. The bases (B) included in this work are mimics for the n-terminal amino group and the side chains of the basic amino acids, i.e., the favorable sites for binding of 18C6 to peptides and proteins. Isopropylamine is chosen as a mimic for the n-terminal amino group, imidazole and 4-methylimidazole are chosen as mimics for the side chain of histidine (His), 1-methylguanidine is chosen as a mimic for the side chain of arginine (Arg), and several primary amines including methylamine, ethylamine, n-propylamine, n-butylamine, and 1,5-diamino pentane as mimics for the side chain of lysine (Lys). Theoretical electronic structure calculations are performed to determine stable geometries and energetics for neutral and protonated 18C6 and the peptidomimetic bases, as well as the proton bound complexes comprised of these species, (B)H(+)(18C6). The measured 18C6 binding affinities of the Lys side chain mimics are larger than the measured binding affinities of the mimics for Arg and His. These results suggest that the Lys side chains should be the preferred binding sites for 18C6 complexation to peptides and proteins. Present results also suggest that competition between Arg or His and Lys for 18C6 is not significant. The mimic for the n-terminal amino group exhibits a measured binding affinity for 18C6 that is similar to or greater than that of the Lys side chain mimics. However, theory suggests that binding to n-terminal amino group mimic is weaker than that to all of the Lys mimics. These results suggest that the n-terminal amino group may compete with the Lys side chains for 18C6 complexation.     

Successive stepwise evolution of host layer‐stacking framework upon the intercalation of mobile vapor guests within side‐chain layers

For the ordered phases of hairy‐rod semiconductive poly(2,5‐bis(3‐tetradecylthiophene‐2‐yl)thieno[3,2‐b]thiophene) (PBTTT) sandwiched in between crystalline platelets of hexamethylbenzene, the successive stepwise evolution of layer‐stacking framework upon guest intercalation has been studied in this research. The direct consequence of the guest intercalation into side‐chain layers is evaluated to cause the lateral shift of thiophene backbones along π–π stacking, resulting in stepwise shift of ultraviolet absorption wavelength. The thermal motions of vapor guests within disordering side‐chain layers subsequently cause progressive expansion of host stacking framework. With the increase in side‐chain length, thicker layers of disordering side chains in liquid crystals (LCs) accommodate additional vapor guests and larger amplitudes of thermal motions of guests, hence promoting the level of reversible d‐spacing change. The mixing between mobile vapor guests and aliphatic side chains is clarified as the mechanism of guest intercalation, which rationalizes successive guest intercalation during heating and the contribution of disordering side‐chain layers. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 1448–1456     

Effect of the Side‐Chain‐Distribution Density on the Single‐Conjugated‐Polymer‐Chain Conformation

The spatial arrangement of the side chains of conjugated polymer backbones has critical effects on the morphology and electronic and photophysical properties of the corresponding bulk films. The effect of the side‐chain‐distribution density on the conformation at the isolated single‐polymer‐chain level was investigated with regiorandom (rra‐) poly(3‐hexylthiophene) (P3HT) and poly(3‐hexyl‐2,5‐thienylene vinylene) (P3HTV). Although pure P3HTV films are known to have low fluorescence quantum efficiencies, we observed a considerable increase in fluorescence intensity by dispersing P3HTV in poly(methyl methacrylate) (PMMA), which enabled a single‐molecule spectroscopy investigation. With single‐molecule fluorescence excitation polarization spectroscopy, we found that rra‐P3HTV single molecules form highly ordered conformations. In contrast, rra‐P3HT single molecules, display a wide variety of different conformations from isotropic to highly ordered, were observed. The experimental results are supported by extensive molecular dynamics simulations, which reveal that the reduced side‐chain‐distribution density, that is, the spaced‐out side‐chain substitution pattern, in rra‐P3HTV favors more ordered conformations compared to rra‐P3HT. Our results demonstrate that the distribution of side chains strongly affects the polymer‐chain conformation, even at the single‐molecule level, an aspect that has important implications when interpreting the macroscopic interchain packing structure exhibited by bulk polymer films.     

Effect of alkyl side chain length on the properties of polyetherimides from molecular simulation combined with experimental results

Three polyetherimides (PEIs) with the same backbone of Ultem 100 but different lengths of the alkyl side chains were simulated by using molecular dynamics and molecular mechanics techniques to investigate the effect of side chain length on their properties and physical mechanism behind. Simulation results, which are consistent to the experimental data, show that PEI‐5 with four methylene units in each alkyl side chain has higher T_g (glass transition temperature) and higher tensile strength, but lower tensile elongation at break than those of PEI‐6 with five and PEI‐8 with seven methylene units in each alkyl side chain. However, unlike the traditional phenomena, conformational analysis provides that PEI‐5 with the highest T_g gives the highest flexibility to the polymer chain, whereas PEI‐8 with the lowest T_g imparts the lowest flexibility resulting from attachment of longer alkyl side chain increase the rigidity of backbone. From the calculated ratio of the accessible volume to the total volume for each system, the highest ratio of PEI‐8 indicates that long alkyl side chains generate more free volume than short side chains, acting as an internal plasticizer in bulk structure. It is the internal plasticizing effect that is predominantly responsible for the abnormal properties, instead of the rigidity from side chains. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 595–599, 2010