Co-ordination behaviour of a novel bisthiourea tripodal ligand: structural, spectroscopic and electrochemical properties of a series of transition metal complexes

The synthesis of a thiourea substituted derivative of tris(pyridyl-2-methyl)amine (TPA) is reported. Two of the three pyridine rings are substituted in the 6-position with benzoylthiourea groups. These thiourea groups undergo intramolecular hydrogen bonding to form six-membered rings which leaves one N-H group available to form hydrogen bonds with other molecules. This reports details how the complexation of this new ligand with transition metal ions yields complexes with differing geometries. Seven co-ordinate Mn(II) and Cd(II), six co-ordinate Ni(II) and five co-ordinate Co(II), Cu(II) and Zn(II) complexes have been isolated.     

Hydrogen bonding and covalent effects in binding of cisplatin to purine bases: ab initio and atoms in molecules studies

Ab initio and density functional calculations are employed to investigate the role of hydrogen bonding in the binding of cisplatin to the purine bases guanine and adenine. Through the use of the theory of atoms in molecules (AIM), it is shown that hydrogen bonds are ubiquitous in such systems, with N-H...N and N-H...Cl interactions present in addition to the expected N-H...O. This in turn means that the known stability of cisplatin-guanine complexes cannot be ascribed solely to hydrogen bonding and allows decomposition of total binding energy into contributions from covalent and hydrogen bonds. To do so, a new method for predicting hydrogen bond energies from bond critical point properties is proposed, employing partial least-squares analysis to remove the family dependence of simple models. Still more hydrogen bond motifs are found in bifunctional complexes of the general type purine-[Pt(NH(3))(2)](2+)-purine, including purine...purine contacts, though again the energetics of these are insufficient to explain the observed trends in stability. Finally, the effect of platination on the pairing of guanine with cytosine is studied in a similar manner, revealing large redistributions of hydrogen bonding but surprisingly small overall changes in pairing energy.     

Carboxylate coordination chemistry of a mononuclear Ni(II) center in a hydrophobic or hydrogen bond donor secondary environment: relevance to acireductone dioxygenase

A series of Ni(II) carboxylate complexes, supported by a chelate ligand having either secondary hydrophobic phenyl groups (6-Ph2TPA, N,N-bis((6-phenyl-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine) or hydrogen bond donors (bnpapa, N,N-bis((6-neopentylamino-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine), have been prepared and characterized. X-ray crystallographic studies of [(6-Ph2TPA)Ni(O2C(CH2)2SCH3)]ClO4.CH2Cl2 (4.CH2Cl2) and [(6-Ph2TPA)Ni(O2CCH2SCH3)]ClO(4).1.5CH2Cl2 (5.1.5CH2Cl2) revealed that each complex contains a distorted octahedral Ni(II) center and a bidentate carboxylate ligand. A previously described benzoate complex ([(6-Ph2TPA)Ni(O2CPh)]ClO4 (3)) has similar structural characteristics. Recrystallization of dry powdered samples of 3, 4.0.5CH2Cl2, and 5 from wet organic solvents yielded a second series of crystalline Ni(II) carboxylate complexes having a coordinated monodentate carboxylate ligand ([(6-Ph2TPA)Ni(H2O)(O2CPh)]ClO4 (6), [(6-Ph2TPA)Ni(H2O)(O2C(CH2)2SCH3)]ClO4.0.2CH2Cl2 (7.0.2CH2Cl2), [(6-Ph2TPA)Ni(H2O)(O2CCH2SCH3)]ClO4 (8)) which is stabilized by a hydrogen-bonding interaction with a Ni(II)-bound water molecule. In the cationic portions of 7.0.2CH2Cl2 and 8, weak CH/pi interactions are also present between the methylene units of the carboxylate ligands and the phenyl appendages of the 6-Ph2TPA ligands. A formate complex of the formulation [(6-Ph2TPA)Ni(H2O)(O2CH)]ClO4 (9) was isolated and characterized. The mononuclear Ni(II) carboxylate complexes [(bnpapa)Ni(O2CPh)]ClO4 (10), [(bnpapa)Ni(O2C(CH2)2SCH3)]ClO4 (11), [(bnpapa)Ni(O2CCH2SCH3)]ClO4 (12), and [(bnpapa)Ni(O2CH)]ClO4 (13) were isolated and characterized. Two crystalline solvate forms of 10 (10.CH3CN and 10.CH2Cl2) were examined by X-ray crystallography. In both, the distorted octahedral Ni(II) center is ligated by a bidentate benzoate ligand, one Ni(II)-bound oxygen atom of which accepts two hydrogen bonds from the supporting bnpapa chelate ligand. Spectroscopic studies of 10(-13) suggest that all contain a bidentate carboxylate ligand, even after exposure to water. The combined results of this work enable the formulation of a proposed pathway for carboxylate product release from the active site Ni(II) center in acireductone dioxygenase.     

Synthesis and Crystal Structure of N-Benzyl-N'-(2-pyridyl)urea and Its Mononuclear Cu(II) Complex

A new ligand of N-benzyl-N'-(2-pyridyl)urea L and its self-assembly product with CuCl2, [Cu(II)LCl2]∞ 1, have been synthesized and structurally characterized by IR, 1H NMR and single-crystal X-ray diffraction analysis. In the structure of L, the urea groups adopt Z,E conformation to form dimers through intermolecular hydrogen bonds; while in complex 1, it assumes Z,Z conformation to fit for the coordination sphere of the Cu(II) ions. The coordinated units are connected through intermolecular N-H…Cl hydrogen bonds to form an extended 2D framework. Finally, a 3D structure is obtained via π-π stacking interactions between pyridyl rings.     

Hydrogen bonding cavities regulating redox behavior and binding of metal-bound ligands

Binding of 3,5-di-tert-butyl-1,2-benzochatechol (H2DTBC) at Zn(II) complexes of a tetradentate, tripodal ligand L is significantly enhanced (36-4.6 x 10(4) fold), and its reduction potential shifted (90-270 mV) to more positive values by introducing one to three amino hydrogen bond donors. The structure of one of the [(L)Zn(DTBC)] complexes is reported and shows intramolecular N-H...O hydrogen bonding between the ligand-based amino group and the Zn(II)-bound chatecholate, which provides an explanation for the observed behavior.     

Ab initio EOM-CCSD spin-spin coupling constants for hydrogen-bonded formamide complexes: bridging complexes with NH3, (NH3)2, H2O, (H2O)2, FH, and (FH)2

EOM-CCSD spin-spin coupling constants across hydrogen bonds have been computed for complexes in which NH3, H2O, and FH molecules and their hydrogen-bonded dimers form bridging complexes in the amide region of formamide. The formamide one-bond N-H coupling constant [(1)J(N-H)] across N-H...X hydrogen bonds increases in absolute value upon complexation. The signs of the one-bond coupling constants (1h)J(H-X) indicate that these complexes are stabilized by traditional hydrogen bonds. The two-bond coupling constants for hydrogen bonds with N-H as the donor [(2h)J(N-X)] and the carbonyl oxygen as the acceptor [(2h)J(X-O)] increase in absolute value in the formamide/dimer relative to the corresponding formamide/monomer complex as the hydrogen bonds acquire increased proton-shared character. The largest changes in coupling constants are found for complexes of formamide with FH and (FH)2, suggesting that bridging FH monomers and dimers in particular could be useful NMR spectroscopic probes of amide hydrogen bonding.     

[CuCl3(H2O)]− complexes aggregated to form hydrate columns in methyl‐substituted pyridinium or piperidinium salts

1,2,3‐Trimethylpyridinium aquatrichloridocuprate(II), (C₈H₁₂N)[CuCl₃(H₂O)], (I), 3,4‐dimethylpyridinium aquatrichloridocuprate(II), (C₇H₁₀N)[CuCl₃(H₂O)], (II), and 2,3‐dimethylpyridinium aquatrichloridocuprate(II), (C₇H₁₀N)[CuCl₃(H₂O)], (III), exhibit the same fundamental structure, with (I) and (II) isomorphous and with the unit‐cell constants of (III) similar to the reduced unit‐cell constants of (I) and (II). The distorted square‐planar [CuCl₃(H₂O)]⁻ complex [mirror symmetric in (I) and (II)] forms two semicoordinate Cu...Cl bonds to a neighboring complex to produce a dimer with 2/m symmetry [only inversion symmetry in (III)]. The semicoordinate Cu...Cl bond length of the dimer shows significant elongation at 295 K compared with that at 100 K, while the coordinate Cu—Cl bond lengths are slightly contracted at 295 K compared with those at 100 K. The inorganic dimers are linked by eight hydrogen bonds to four neighboring dimers to establish a checkerboard network layer in the ab plane, with voids between the dimers that accommodate, on both sides, inversion‐related organic cation pairs. The organic cations are required by mirror‐plane symmetry to be disordered in (I) and (II). The organic cations and [CuCl₃(H₂O)]⁻ complexes are nearly coplanar and tilted out of the layer plane to establish a hybrid organic–inorganic layer structure parallel to (202) [(11) in (III)], with hydrate columns (defined by water molecules) and hydrophobic columns (defined by methyl groups) parallel to each other [and along the 2₁ axes in (I) and (II)]. In 1,1‐dimethylpiperidinium aquatrichloridocuprate(II), (C₇H₁₆N)[CuCl₃(H₂O)], (IV), the bulkier organic cation prevents semicoordinate bonding between complexes, which are hydrogen bonded side‐to‐side in zigzag chains that place water molecules in columns along half of the 2₁ axes.     

Quantifying the relative contribution of hydrogen bonding and hydrophobic environments, and coordinating groups, in the zinc(II)-water acidity by synthetic modelling chemistry

Ligands derived from the tripodal N4 ligand tris(pyridylmethyl)amine ((pyCH2)3N, tpa) of general formula (6-RNHpyCH2)nN(CH2py)(3-n)(R = H, n= 1-3 L(1-3); R = neopentyl, n= 1-3 L'(1-3)) were used to elucidate and quantify the magnitude of the effects exerted by hydrogen bonding and hydrophobic environments in the zinc-water acidity of their complexes. The pKa of the zinc-bound water molecule of [(L(1-3))Zn(OH2)]2+ and [(L'(1-3))Zn(OH2)]2+ 1'-3' was determined by potentiometric pH titrations in water (1-3) or water-ethanol (1:1) (1'-3'). The zinc(II) water acidity gradually increases as the number of -NH2 hydrogen bonding groups adjacent to the water molecule increases. Thus, the zinc-bound water of [(L3)Zn(OH2)]2+ and [(tpa)Zn(OH2)]2+ deprotonate with pKa values of 6.0 and 8.0, respectively. The pKa of the water molecule, however, is only raised from 8.0 in [(tpa)Zn(OH2)]2+ to 9.1 in [(bpg)Zn(OH2)]+ (bpa =(pyCH2)2N(CH2COO-)). Moreover, the acidity of the zinc-bound water of several of the five-coordinate zinc(II) complexes with the hydrogen bonding groups is greater than that of four-coordinate [((12)aneN3)Zn(OH2)]2+ (pKa = 7.0). This result shows that the magnitude of the effect exerted by the hydrogen bonding groups can be larger than that induced by changing one neutral by one anionic ligand, and/or even by changing the coordination number of the zinc(II) centre. The X-ray structure of [(L'2)Zn(OH)]ClO4 2' and [(L'3)Zn(OH)]ClO4.CH3CN 3'.CH3CN is reported, and show the neopentylamino groups forming N-H...O hydrogen bonds with the zinc-bound hydroxide. Although, which have hydrogen bonding and hydrophobic groups, have a zinc-bound water more acidic than [(tpa)Zn(OH2)]2+, their pKa is not always lower than that of 1-3. This result suggests that a hydrogen bonding microenvironment may be more effective than a hydrophobic one to increase the zinc-water acidity.     

Synthesis and structure of ruthenium(IV) complexes featuring N-heterocyclic ligands with an N-H group as the hydrogen-bond donor: hydrogen interactions in solution and in the solid state

The synthesis and characterization of novel ruthenium(IV) complexes [Ru(η(3):η(3)-C(10)H(16))Cl(2)L] [L = 3-methylpyrazole (2b), 3,5-dimethylpyrazole (2c), 3-methyl-5-phenylpyrazole (2d), 2-(1H-pyrazol-5-yl)phenol (2e), 6-azauracile (3), and 1H-indazol-3-ol (4)] are reported. Complex 2e is converted to the chelated complex [Ru(η(3):η(3)-C(10)H(16))Cl(κ(2)-N,O-2-(1H-pyrazol-3-yl)phenoxy)] (5) by treatment with an excess of NaOH. All of the ligands feature N-H, O-H, or C═O as the potential hydrogen-bonding group. The structures of complexes 2a-2c, 2e, 3, and 5 in the solid state have been determined by X-ray diffraction. Complexes 2a-2c and 3, which contain the pyrazole N-H group, exhibit intra- and intermolecular hydrogen bonds with chloride ligands [N-H···Cl distances (?): intramolecular, 2.30-2.78; intermolecular, 2.59-2.77]. Complexes 2e and 3 bearing respectively O-H and C═O groups also feature N-H···O interactions [intramolecular (2e), 2.27 ?; intermolecular (3), 2.00 ?]. Chelated complex 5, lacking the O-H group, only shows an intramolecular N-H···Cl hydrogen bonding of 2.42 ?. The structure of complex 3, which turns out to be a dimer in the solid state through a double intermolecular N-H···O hydrogen bonding, has also been investigated in solution (CD(2)Cl(2)) by NMR diffusion studies. Diffusion-ordered spectroscopy experiments reveal an equilibrium between monomer and dimer species in solution whose extension depends on the temperature, concentration, and coordinating properties of the solvent. Preliminary catalytic studies show that complex 3 is highly active in the redox isomerization of the allylic alcohols in an aqueous medium under very mild reaction conditions (35 °C) and in the absence of a base.     

Trinuclear copper complexes with triplesalen ligands: geometric and electronic effects on ferromagnetic coupling via the spin-polarization mechanism

A series of trinuclear Cu(II) complexes with the tris(tetradentate) triplesalen ligands H(6)talen, H(6)talen(tBu(2) ), and H(6)talen(NO(2) ), namely [(talen)Cu(II) (3)] (1), [(talen(tBu(2) ))Cu(II) (3)] (2), and [(talen(NO(2) ))Cu(II) (3)] (3), were synthesized and their molecular and electronic structures determined. These triplesalen ligands provide three salen-like coordination environments bridged in a meta-phenylene arrangement by a phloroglucinol backbone. The structure of [(talen)Cu(II) (3)] (1) was communicated recently. The structure of the tert-butyl derivative [(talen(tBu(2) ))Cu(II) (3)] (2) was established in three different solvates. The molecular structures of these trinuclear complexes show notable differences, the most important of which is the degree of ligand folding around the central Cu(II)-phenolate bonds. This folding is symmetric with regard to the central phloroglucinol backbone in two structures, where it gives rise to bowl-shaped overall geometries. For one solvate two trinuclear triplesalen complexes form a supramolecular disk-like arrangement, hosting two dichloromethane molecules like two pearls in an oyster. The FTIR spectra of these complexes indicate the higher effective nuclear charge of Cu(II) in comparison to the trinuclear Ni(II) complexes by the lower C--O and higher C=N stretching frequencies. The UV/Vis/NIR spectra of 1-3 reflect the stronger ligand folding in the tert-butyl complex 2 by an intense phenolate-to-Cu(II) LMCT. This absorption is absent in 1 and is obscured by the nitro chromophore in 3. The more planar molecular structures cause orthogonality of the Cu(II) d(x(2)-y(2) ) orbital and the phenolate O p(z) orbital, which leads to small LMCT dipole strengths. Whereas 1 and 3 exhibit only irreversible oxidations, 2 exhibits a reversible one-electron oxidation at +0.26 V, a reversible two-electron oxidation at +0.59 V, and a reversible one-electron oxidation at +0.81 V versus Fc(+)/Fc. The one-electron oxidized form 2(+) is strongly stabilized with respect to reference mononuclear salen-like Cu complexes. Chemical one-electron oxidation of 2 to 2(+) allows the determination of its UV/Vis/NIR spectrum, which indicates a ligand-centered oxidation that can be assigned to the central phloroglucinol unit by analogy with the trinuclear Ni triplesalen series. Delocalization of this oxidation over three Cu(II)-phenolate subunits causes the observed energetic stabilization of 2(+). Temperature-dependent magnetic susceptibility measurements reveal ferromagnetic couplings for all three trinuclear Cu(II) triplesalen complexes. The trend of the coupling constants can be rationalized by two opposing effects: 1) electron-withdrawing terminal substituents stabilize the central Cu(II)-phenolate bond, which results in a stronger coupling, and 2) ligand folding around the central Cu(II)-phenolate bond opens a bonding pathway between the magnetic Cu(II) d(x(2)-y(2) ) orbital and the phenolate O p(z) orbital, which results in a stronger coupling. Density functional calculations indicate that both spin-polarization and spin-delocalization are operative and that slight geometric variations alter their relative magnitudes.     

Theoretical investigation into the mechanism of reductive elimination from bimetallic palladium complexes

Reductive elimination of C-Cl and C-C bonds from binuclear organopalladium complexes containing Pd-Pd bonds with overall formal oxidation state +III are explored by density functional theory for dichloromethane and acetonitrile solvent environments. An X-ray crystallographically authenticated neutral complex, [(L-C,N)ClPd(μ-O(2)CMe)](2) (L = benzo[h]quinolinyl) (I), is examined for C-Cl coupling, and the proposed cation, [(L-C,N)PhPd(1)(μ-O(2)CMe)(2)Pd(2)(L-C,N)](+) (II), examined for C-C coupling together with (L-C,N)PhPd(1)(μ-O(2)CMe)(2)Pd(2)Cl(L-C,N) (III) as a neutral analogue of II. In both polar and nonpolar solvents, reaction from III via chloride dissociation from Pd(2) to form II is predicted to be favored. Cation II undergoes Ph-C coupling at Pd(1) with concomitant Pd(1)-Pd(2) lengthening and shortening of the Pd(1)-O bond trans to the carbon atom of L; natural bond orbital analysis indicates that reductive coupling from II involves depopulation of the d(x(2)-y(2)) orbital of Pd(1) and population of the d(z(2)) orbitals of Pd(1) and Pd(2) as the Pd-Pd bond lengthens. Calculations for the symmetrical dichloro complex I indicate that a similar dissociative pathway for C-Cl coupling is competitive with a direct (nondissociative) pathway in acetonitrile, but the direct pathway is favored in dichloromethane. In contrast to the dissociative mechanism, direct coupling for I involves population of the d(x(2)-y(2)) orbital of Pd(1) with Pd(1)-O(1) lengthening, significantly less population occurs for the d(z(2)) orbital of Pd(1) than for the dissociative pathway, and d(z(2)) at Pd(2) is only marginally populated resulting in an intermediate that is formally a Pd(1)(I)-Pd(2)(III) species, (L-Cl-N,Cl)Pd(1)(μ-O(2)CMe)Pd(2)Cl(O(2)CMe)(L-C,N) that releases chloride from Pd(2) with loss of Pd(I)-Pd(III) bonding to form a Pd(II) species. A similar process is formulated for the less competitive direct pathway for C-C coupling from III, in this case involving decreased population of the d(z(2)) orbital of Pd(2) and strengthening of the Pd(I)-Pd(III) interaction in the analogous intermediate with η(2)-coordination at Pd(1) by L-Ph-N, C(1)-C(2).     

LZnX complexes of tripodal ligands with intramolecular RN-H hydrogen bonding groups: structural implications of a hydrogen bonding cavity, and of X/R in the hydrogen bonding geometry/strength

Tripodal ligands N(CH2Py)3-n(CH2Py-6-NHR)n(R=H, n=1-3 L1-3, n=0 tpa; R=CH2tBu, n=1-3 L'1-3) are used to investigate the effect of different hydrogen bonding microenvironments on structural features of their LZnX complexes (X=Cl-, NO3-, OH-). The X-ray structures of [(L2)Zn(Cl)](BPh4)2.0.5(H2O.CH3CN), [(L3)Zn(Cl)](BPh4)3.CH3CN, [(L'1)Zn(Cl)](BPh4) 1', [(L'2)Zn(Cl)](BPh4)2'.CH3OH, and [(L'3)Zn(Cl)](BPh4)3' have been determined and exhibit trigonal bipyramidal geometries with intramolecular (internal) N-HCl-Zn hydrogen bonds. The structure of [(L'2)Zn(ONO2)]NO3 4'.H2O with two internal N-HO-Zn hydrogen bonds has also been determined. The axial Zn-Cl distance lengthens from 2.275 A in [(tpa)Zn(Cl)](BPh4) to 2.280-2.347 A in 1-3, 1'-3'. Notably, the average Zn-N(py) distance is also progressively lengthened from 2.069 A in [(tpa)Zn(Cl)](BPh4) to 2.159 and 2.182 A in the triply hydrogen bonding cavity of 3 and 3', respectively. Lengthening of the Zn-Cl and Zn-N(py) bonds is accompanied by a progressive shortening of the trans Zn-N bond from 2.271 A in [(tpa)Zn(Cl)](BPh4) to 2.115 A in 3 (2.113 A in 3'). As a result of the triply hydrogen bonding microenvironment the Zn-Cl and Zn-N(py) distances of 3 are at the upper end of the range observed for axial Zn-Cl bonds, whereas the axial Zn-N distance is one of shortest among N4 ligands that induce a trigonal bipyramidal geometry. Despite the rigidity of these tripodal ligands, the geometry of the intramolecular RN-HX-Zn hydrogen bonds (X=Cl-, OH-, NO3-) is strongly dependent on the nature of X, however, on average, similar for R=H, CH2tBu.     

Polynuclear palladium complexes with 3,5-dimethylpyrazolate exhibiting three different coordination modes

The characterisation of dinuclear pyrazolato-bridged Pd(II) complexes, [(Pd(mu-dmpz)Cl(Hdmpz))2] (1) and [(Pd(mu-dmpz)(dmpz)(Hdmpz))2] (2) (Hdmpz=dimethylpyrazole), has been carried out. An X-ray study of compound 2 reveals the existence of intramolecular N-H...N hydrogen bonds between neighbouring dmpz groups. Compound 2 has been deprotonated and both acidic hydrogen atoms substituted by two metal atoms of Cu(I), Ag(I) or Au(I) to give the tetranuclear compounds [Pd2M2(mu(2)-dmpz-kappaN,N')6] (M=Cu, Ag, Au). The structure of these compounds resembles a box with a small cavity inside. There are also three pi-electron-rich clefts between each of the three pairs of azolato rings, capable of further complexation. The reactions of [Pd2M2(mu(2)-dmpz-kappaN,N')6] (M=Cu, Ag, Au) with AgClO4 render compounds of the type [(Pd2M2(mu(2)-dmpz-kappaN,N')2(-)(mu(3)-dmpz-kappaN,N',C4)4Ag2(mu(2)-O2ClO2))2] (M=Cu, Ag, Au). The X-ray structures of crystals obtained from a solution of compounds [(Pd2M2(mu(2)-dmpz-kappaN,N')2(mu(3)-dmpz-kappaN,N',C4)4Ag2(mu(2)-O(2)ClO2))2] (M=Ag, Au) in acetone reveals a [(Pd2M2(mu(2)-dmpz-kappaN,N')2(mu(3)-dmpz-kappaN,N',C4)4Ag(OCMe2)(OClO3)Ag(mu(2)-O2ClO2))2] stoichiometry, indicating that only two of the three pi-electron-rich clefts have been used to accommodate Ag+ ions. Each of the silver atoms are located in between two 3,5-dmpz rings and are eta(1)-bonded to the C4 atom of each group.     

Elongation of phenoxide C-O bonds due to formation of multifold hydrogen bonds: statistical, experimental, and theoretical studies

Statistical studies using the Cambridge Structural Database have revealed that there are several elongated phenoxide C-O bonds. They are characterized by the formation of 3-fold (or occasionally 2-fold) hydrogen bonds to the phenoxide oxygen atoms, and their mean bond length extends up to 1.320 ?, which is quite different from the theoretically predicted carbon-oxygen bond length of C(6)H(5)O(-) (1.26 ?). Elongated phenoxide C-O bonds associated with the formation of 3-fold hydrogen bonds were also observed in the X-ray structures of proton-transfer complexes (2X-O(-))(TEAH(+))s derived from 5'-X-substituted 5,5'-dimethyl-1,1':3',1'-terphenyl-2,2',2'-triols (2X-OHs, where X = NO(2), CN, COOCH(3), Cl, F, H, and CH(3)) and triethylamine (TEA). By comparing the X-ray structures, C-O bond elongation was found to be only slightly affected by an electron-withdrawing substituent at the para position (X). This along with strong bathochromic shifts of N-H(···O(-)) and O-H(···O(-)) stretching vibrations in the IR spectra indicates that the elongated C-O bonds in (2X-O(-))(TEAH(+))s essentially have single-bond character. This is further confirmed by molecular orbital calculations on a model complex, showing that the negatively charged phenoxide oxygen atom is no longer conjugated to the central benzene ring, and the NICS values of the three benzene rings are virtually identical. However, C-O bond elongation in (2X-O(-))(TEAH(+))s was considerably influenced by a change in the hydrogen-bond geometry. This also suggests that hydrogen bonds significantly affect phenoxide C-O bond elongation.     

Metal-induced tautomerization of p- to o-quinone compounds: experimental evidence from CuI and ReI complexes of azophenine and DFT studies

Azophenine (7,8-diphenyl-2,5-bis(phenylamino)-p-quinonediimine, L(p)) reacts with [Cu(PPh3)4](BF4) or [Re(CO)(5)Cl] to yield the (Ph3P)(2)Cu(+) or [(OC)(3)ClRe] complex of the tautomeric form 7,8-diphenyl-4,5-bis(phenylamino)-o-quinonediimine, L(o), as evident from structure determinations and from very intense metal-to-ligand charge transfer (MLCT) transitions in the visible region. Time-dependent DFT (TD-DFT) calculations on model complexes [(N intersection N)Re(CO)(3)Cl] confirm the spectroscopic results, showing considerably higher oscillator strengths of the MLCT transition for the o-quinonediimine complexes in comparison to compounds with N intersection N=1,4-dialkyl-1,4-diazabutadiene. The complexes are additionally stabilized through hydrogen bonding between two now ortho-positioned NHPh substituents and one fluoride of the BF(4) (-) anion (Cu complex) or the chloride ligand (Re complex). DFT Calculations on the model ligands p-quinonediimine or 2,5-diamino-p-quinonediimine and their ortho-quinonoid forms with and without Li(+) or Cu(+) are presented to discuss the relevance for metal-dependent quinoproteins.     

Phenoxyl radicals: H-bonded and coordinated to Cu(II) and Zn(II)

Two pro-ligands ((R)LH) comprised of an o,p-di-tert-butyl-substituted phenol covalently bonded to a benzimidazole ((Bz)LH) or a 4,5-di-p-methoxyphenyl substituted imidazole ((PhOMe)LH), have been structurally characterised. Each possesses an intramolecular O-H[dot dot dot]N hydrogen bond between the phenolic O-H group and an imidazole nitrogen atom and (1)H NMR studies show that this bond is retained in solution. Each (R)LH undergoes an electrochemically reversible, one-electron, oxidation to form the [(R)LH] (+) radical cation that is considered to be stabilised by an intramolecular O...H-N hydrogen bond. The (R)LH pro-ligands react with M(BF(4))(2).H(2)O (M = Cu or Zn) in the presence of Et(3)N to form the corresponding [M((R)L)(2)] compound. [Cu((Bz)L)(2)] (), [Cu((PhOMe)L)(2)] (), [Zn((Bz)L)(2)] and [Zn((PhOMe)L)(2)] have been isolated and the structures of .4MeCN, .2MeOH, .2MeCN and .2MeCN determined by X-ray crystallography. In each compound the metal possesses an N(2)O(2)-coordination sphere: in .4MeCN and .2MeOH the {CuN(2)O(2)} centre has a distorted square planar geometry; in .2MeCN and .2MeCN the {ZnN(2)O(2)} centre has a distorted tetrahedral geometry. The X-band EPR spectra of both and , in CH(2)Cl(2)-DMF (9 : 1) solution at 77 K, are consistent with the presence of a Cu(ii) complex having the structure identified by X-ray crystallography. Electrochemical studies have shown that each undergo two, one-electron, oxidations; the potentials of these processes and the UV/vis and EPR properties of the products indicate that each oxidation is ligand-based. The first oxidation produces [M(II)((R)L)((R)L )](+), comprising a M(ii) centre bound to a phenoxide ((R)L) and a phenoxyl radical ((R)L ) ligand; these cations have been generated electrochemically and, for R = PhOMe, chemically by oxidation with Ag[BF(4)]. The second oxidation produces [M(II)((R)L )(2)](2+). The information obtained from these investigations shows that a suitable pro-ligand design allows a relatively inert phenoxyl radical to be generated, stabilised by either a hydrogen bond, as in [(R)LH] (+) (R = Bz or PhOMe), or by coordination to a metal, as in [M(II)((R)L)((R)L )](+) (M = Cu or Zn; R = Bz or PhOMe). Coordination to a metal is more effective than hydrogen bonding in stabilising a phenoxyl radical and Cu(ii) is slightly more effective than Zn(II) in this respect.     

Homoleptic zinc(II) complexes with first and second coordination shells of 5-tert-butylpyrazole

Reaction of hydrated Zn[NO3]2 or Zn[BF4]2 with four or more equivalents of 3{5}-tert-butylpyrazole (L(tBu)) yields [Zn(L(tBu))4]X2 (X- = NO3- or BF4-). The nitrate complex contains C2-symmetric four-coordinate zinc(II) centers with a slightly flattened tetrahedral geometry, and each nitrate anion hydrogen bonds to two pyrazole N-H groups. Similar reactions with Zn[ClO4]2 or ZnCl2 in the presence of 2 equiv of AgPF6 or AgSbF6 yield instead [{Zn(L(tBu))4}(L(tBu))4][ClO4]2 and [{Zn(L(tBu))4}(L(tBu))2]Y2 (Y- = PF6- or SbF6-). Crystals of [{Zn(L(tBu))4}(L(tBu))4][ClO4]2 are composed of discrete [{Zn(L(tBu))4}(L(tBu))4]2+ supramolecules that are formed from N-H...N hydrogen bonding between zinc-bound and uncoordinated pyrazole rings. The [{Zn(L(tBu))4}(L(tBu))4]2+ moieties are linked into planar 4(4) nets by hydrogen bonding to bridging ClO4- anions. The ClO4- ions are almost perfectly encapsulated in near-spherical cavities of approximate dimensions 5.0 x 5.0 x 4.5 A that are formed by two interlocked supramolecular dications. Similarly, [{Zn(L(tBu))4}(L(tBu))2][PF6]2 crystallizes as discrete supramolecules in the crystal with the PF6- anions occupying a shallow bowl-shaped cavity on the surface of the complex that is formed by two zinc-bound and one uncoordinated pyrazole ligands. (1)H NMR and IR studies of [{Zn(L(tBu))4}(L(tBu))4][ClO4]2 in CD2Cl2 imply that the second-sphere L(tBu) ligands dissociate from the [Zn(L(tBu))4]2+ center in this solvent and that free and metal-bound L(tBu) are in rapid chemical exchange.     

4-甲基苯硫乙酸与含氮配体构筑的两个化合物的合成，晶体结构，热稳定性与发光性质的研究

合成了2个配合物[ZnL₂(Him)₂] (1)和[ (Cu₂L₂(phen)₂( μ₂-Cl)₂)·(Cu₂( μ₂-L)₂(phen)₂Cl₂)] (2)(L=4-甲基苯硫乙酸,Him=咪唑,phen=1,10-邻菲咯啉),进行了元素分析、红外、热重等表征,并测定了其晶体结构。配合物1晶体属于单斜晶系,空间群为C2/c。配合物2晶体属于三斜晶系,空间群为P1。配合物1是由N-H…O氢键作用形成的一维带状结构。配合物2的单胞中含有2个分别由氯原子与羧基氧原子桥联的双核独立分子,通过C-H…O,C-H…Cl氢键以及C-H…π作用而构成三维结构。室温固体荧光分析显示配合物1具有较强荧光吸收。     

Hydrogen-bonded assembly and binding affinity of the multi-point acceptor and isophthalic acid

Supermolecular complexes formed by oligophenyleneethynylene derivatives and isophthalic acid were studied using AM1 method to obtain binding energy. Electronic spectra and IR spectra of the complexes were calculated by INDO/CIS and AM1 methods based on AM1 geometries. Results indicated that the dimer could be formed by the monomers via hydrogen bonding because of the negative binding energy. Binding energy of the complexes was affected by electronegativity and steric effects of the substituents. The first UV absorptions and IR frequencies of N-H bonds of the complexes were both red-shifted compared with those of the monomers. The complexes could bind small molecules via hydrogen bonds, resulting in the change in UV absorptions and an increase in IR frequencies of N-H bonds.     

The dinuclear copper(II) complexes di‐μ‐chlorido‐bis{[N,N′‐bis(4‐chlorobenzyl)propane‐1,2‐diamine]chloridocopper(II)} and di‐μ‐chlorido‐bis{[N,N′‐bis(3,4‐methylenedioxybenzyl)propane‐1,2‐diamine]chloridocopper(II)}

The two title dinuclear copper(II) complexes, [Cu₂Cl₄(C₁₇H₂₀Cl₂N₂)₂], (I), and [Cu₂Cl₄(C₁₉H₂₂N₂O₄)₂], (II), have similar coordination environments. In each complex, the asymmetric unit consists of one half‐molecule and the two copper centres are bridged by a pair of Cl atoms, resulting in complexes with centrosymmetric structures containing Cu(μ‐Cl)₂Cu parallelogram cores; the Cu...Cu separations and Cu—Cl—Cu angles are 3.4285 (8) Å and 83.36 (3)°, respectively, for (I), and 3.565 (2) Å and 84.39 (7)° for (II). Each Cu atom is five‐coordinated and the coordination geometry around the Cu atom is best described as a distorted square‐pyramid with a τ value of 0.155 (3) for (I) and 0.092 (7) for (II). The apical Cu—Cl bond length is 2.852 (1) Å for (I) and 2.971 (2) Å for (II). The basal Cu—Cl and Cu—N average bonds lengths are 2.2673 (9) and 2.030 (2) Å, respectively, for (I), and 2.280 (2) and 2.038 (6) Å for (II). The molecules of (I) are linked by one C—H...Cl hydrogen bond into a complex [10] sheet. The molecules of (II) are linked by one C—H...Cl and one N—H...O hydrogen bond into a complex [100] sheet.