Structural diversity in bishydroxylamine complexes of gallium

Reactions of bishydroxylamines of the type HON(R)CH2CH2N(R)OH (R=Me, tBu) with trimethyl- and triisopropylgallium gave bicyclic metalla cages of the formula R'2GaO(R)NCH2CH2N(R)OGaR'2 [R'=Me, R=Me (), tBu (); R'=iPr, R=Me (), tBu ()] with six-membered Ga2O2N2-rings. While the complexes show the same core constitution in the solid state, NMR spectra reveal the steric influence of the isopropyl substituent of the compounds / on its behaviour in solution. The reaction of the sterically more demanding substituted tri-tert-butylgallium with HON(Me)CH2CH2N(Me)OH yielded a heterodimeric complex O'-[HON(Me)CH2CH2NH(Me)O(tBu2Ga)]-cyclo-(tBu2Ga)-O,N'-[ON(Me)CH2CH2N(Me)O] () with two gallium atoms of different surrounding and two different bishydroxylamine ligands, one doubly deprotonated and one protonated, but at one end in its tautomeric aminoxide form. Further condensation of was observed to give a tricyclic compound cyclo-[(tBuGa)ON(Me)CH2CH2N(Me)O]2 () with a central Ga2O2N2 ring resulting from two Ga-N donor-acceptor bonds.     

Structural diversity and similar bioactivity in synthetic bicyclononanes

Simple syntheses of diverse bicyclo[3.3.1]nonanes and related compounds as the minimal substructure of bioactive natural products via Michael, aldol, and alkylation reactions from diketones are described herein. The structures of the synthesized compounds were determined by infrared spectroscopy, NMR (¹H and ¹³C), and electrospray ionization–high-resolution mass spectrometry. We also show the in vitro antimicrobial activity against Gram-positive and Gram-negative bacteria. The qualitative analysis has revealed that the new synthesized compounds 5, 6, 9, and 11 present antibacterial properties.     

Structural diversity in sodium doped water trimers

The structures of sodium doped water trimers are characterized on the basis of their infrared action spectra in the OH-stretching region and a global optimization approach to identify the lowest energy minima. The most stable structure is an open ring with two contacts of terminal water molecules to the Na atom. This structure explains the dominating feature in the IR depletion spectrum around 3410 cm(-1). Three additional isomer classes were found in an energy window of 12 kJ mol(-1) with vertical ionization energies ranging from ～3.83 eV to ～4.36 eV. These structures show different hydrogen bonding and sodium coordination patterns and are identified by specific spectral features in the IR spectra. The significant abundance of closed rings with an external Na atom, resembling the undoped water trimer, suggests that for larger clusters the picture of the sodium atom being situated on the cluster surface seems adequate.     

Structural diversity of small molecule libraries

A novel method for assessing structural diversity is presented. Maximum common subgraph identity is used as the measure of similarity between two chemical structures. A conditional probability treatment of similarity distributions for libraries of chemical structures is used to define diversity. This evaluation method together with the evaluation of traditional physicochemical properties is used to assess a large number of chemical libraries and to understand structural differences between these.     

Structural and functional properties of designed globins

De novo design of artificial proteins is an essential approach to elucidate the principles of protein architecture and to understand specific functions of natural proteins and also to yield novel molecules for medical and industrial aims. We have designed artificial sequences of 153 amino acids to fit the main-chain framework of the sperm whale myoglobin structure based on the knowledge-based energy functions to evaluate the compatibility between protein tertiary structures and amino acid sequences. The synthesized artificial globins bind a single heme per protein molecule as designed, which show well-defined electrochemical and spectroscopic features characteristic of proteins with a low-spin heme. Redox and ligand binding reactions of the artificial heme proteins were investigated and these heme-related functions were found to vary with their structural uniqueness. Relationships between the structural and functional properties are discussed.     

Structural diversity based on cyclopropane scaffolds

[structure: see text] A practical and efficient route for the stereoselective conversion of easily accessible homoallylic alcohols to diastereomerically pure cis- and trans-disubstituted and 1,2,3-trisubstituted cyclopropanes has been developed. The diversity of structures that can be prepared and the simplicity of the overall sequence make this route ideal for extension to solid-phase synthesis techniques and ultimately combinatorial library generation.     

Structural diversity and chemical trends in hybrid inorganic-organic framework materials

Hybrid framework compounds, including both metal-organic coordination polymers and systems that contain extended inorganic connectivity (extended inorganic hybrids), have recently developed into an important new class of solid-state materials. We examine the diversity of this complex class of materials, propose a simple but systematic classification, and explore the chemical and geometrical factors that influence their formation. We also discuss the growing evidence that many hybrid frameworks tend to form under thermodynamic rather than kinetic control when the synthesis is carried out under hydrothermal conditions. Finally, we explore the potential applications of hybrid frameworks in areas such as gas separations and storage, heterogeneous catalysis, and photoluminescence.     

Structural diversity in a series of alkyl-substituted cesium aryloxides

A family of cesium aryloxides [Cs(OAr)](n) were synthesized and structurally characterized from the reaction of 1:1 or 1:excess stoichiometry of Cs(0) and the appropriate alkyl-substituted phenol: 2-alkylphenol [alkyl = methyl (H-oMP), isopropyl (H-oPP), and tert-butyl (H-oBP)] and 2,6-dialkylphenol [alkyl = methyl (H-DMP), isopropyl (H-DIP), tert-butyl (H-DBP), and phenyl (H-DPhP)]. The products were structurally identified as [Cs(oMP)(H-oMP)(2)](n) (1), [Cs(5)(oPP)(5)](n) (2), [Cs(4)(oBP)(4)(H-oBP)(6)](n) (3x, shown), [Cs(3)(DMP)(3)](n) (4), [Cs(2)(DIP)(2)](n) (5), [Cs(DIP)(H-DIP)](n) (5x), and [Cs(DPhP)](n) (7). Compounds 1-7 were found to adopt complex polymeric structures employing π interactions from the neighboring pendant phenoxide ligands. The solution behavior of these compounds was studied using solution (133)Cs NMR spectroscopy, and for each compound, a single (133)Cs NMR resonance was observed, with chemical shift values found to be strongly solvent-dependent. This implies that monomeric cesium salt species involving solvent interactions exist in solution.     

Structural diversity in poly(disulfide)s

This article reports a synthetic methodology for single step preparation of telechelic poly(disulfide)s (PDS) by step‐growth polymerization between a di‐thiol and a commercially available monomer 2,2′‐dithiodipyridine in presence of a functional group appended pyridyl disulfide moiety as the “mono‐functional impurity” (MFI). Redox‐destructible well‐defined segmented PDSs with functional chain terminal, predicted and tunable degree of polymerization and narrow polydispersity index (<2.0) could be synthesized under a mild reaction condition. Using an appropriate MFI, PDS could be synthesized with trithiocarbonate chain terminals in a single step, which could be further used as macro chain‐transfer agent (CTA) for chain growth polymerization under RAFT mechanism producing ABA type tri‐block copolymer wherein the B block consists of the degradable PDS chain. By copolymerization between a hydrophobic di‐thiol monomer and a hydroxyl group appended di‐thiol monomer, PDS could be prepared with pendant hydroxyl functional group which was utilized to initiate ring opening polymerization of cyclic lactide monomers producing well‐defined degradable graft‐copolymer. The pendant hydroxyl groups were further utilized to anchor a polar carboxylic group to the degradable PDS backbone which under basic condition showed aqueous self‐assembly generating micelle‐like structure with hydrophobic guest encapsulation ability and glutathione responsive sustained release. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 194–202     

Organoiodine complexes: Structural and functional variety

The present review summarizes the results of structural studies of organoiodine complexes. Particular emphasis is given to the role of intermolecular interactions such as halogen—halogen (I…I), hydrophobic, fy—fy stacking, and hydrogen bonds (C—H…I) in the formation of supramolecular iodine-containing architectures. The molecular formula, size, shape, and stability of the polyhalide ion and the way of its coordination by an outer-sphere cation or an organic macromolecule depend on the nature and symmetry of the cationic environment, the ability of a solvating solvent to form complexes with iodine, and the conditions of the synthesis. Efforts have been made to highlight a structural and functional variety of iodine-containing complexes and estimate the prospects of using them as organic conductors, magnetic materials, liquid electrolytes, and biologically active compounds.     

Structural diversity of peroxidase-catalyzed oxidation products of o-methoxyphenols

[reaction: see text] The biocatalytic oxidation of o-methoxyphenolic compounds led to a variety of oligophenols (dimers to pentamers) and some of their oxidation products. The reaction was carried out in an aqueous medium at room temperature with hydrogen peroxide as the terminal oxidant in a facile and green route to potentially bioactive compounds. Detailed structural information on the products of peroxidase-catalyzed oxidation of o-methoxyphenols is presented for the first time.     

Phylogenetic distribution and structural analyses of cyanobacterial glutaredoxins (Grxs)

Glutaredoxins (Grxs), the oxidoreductase proteins, are involved in several cellular processes, including maintenance of cellular redox potential and iron-sulfur homeostasis. The analysis of 503 amino acid sequences from 167 cyanobacterial species led to the identification of four classes of cyanobacterial Grxs, i.e., class I, II, V, and VI Grxs. Class III and IV Grxs were absent in cyanobacteria. Class I and II Grxs are single module oxidoreductase while class V and VI Grxs are multimodular proteins having additional modules at their C-terminal and N-terminal end, respectively. Furthermore, class VI Grxs were exclusively present in marine cyanobacteria. We also report the identification of class VI Grxs with two novel active site motif compositions. Detailed phylogenetic analysis of all four classes of Grxs revealed the presence of several subgroups within each class of Grx having variable dithiol and/or monothiol catalytic active site motif and putative glutathione binding sites. However, class II Grxs possess CGFS-type highly conserved monothiol catalytic active site motif. Sequence analysis confirmed the highly diverse nature of Grx proteins in terms of their amino acid composition; though, sequence diversity does not affect the overall 3D structure of cyanobacterial Grxs. The active site residues and putative GSH binding residues are uncharged amino acids which are present on the surface of the protein. Additionally, the presence of hydrophilic residues at the surface of Grxs confirms their solubility. Protein-ligand interaction analysis identified novel glutathione binding sites on Grxs. Regulation of Grxs encoding genes expression by light quality and quantity as well as salinity suggests their role in determining the fitness of organisms under abiotic factors.     

Structural diversity in imidazolidinone organocatalysts: a synchrotron and computational study

(S)‐1‐(Methylaminocarbonyl)‐3‐phenylpropanaminium chloride (S2·HCl), C₁₀H₁₅N₂O⁺·Cl⁻, crystallizes in the orthorhombic space group P2₁2₁2₁ with a single formula unit per asymmetric unit. (5R/S)‐5‐Benzyl‐2,2,3‐trimethyl‐4‐oxoimidazolidin‐1‐ium chloride (R3 and S3), C₁₃H₁₉N₂O⁺·Cl⁻, crystallize in the same space group as S2·HCl but contain three symmetry‐independent formula units. (R/S)‐5‐Benzyl‐2,2,3‐trimethyl‐4‐oxoimidazolidin‐1‐ium chloride monohydrate (R4 and S4), C₁₃H₁₉N₂O⁺·Cl⁻·H₂O, crystallize in the space group P2₁ with a single formula unit per asymmetric unit. Calculations at the B3LYP/6–31G(d,p) and B3LYP/6–311G(d,p) levels of the conformational energies of the cation in R3, S3, R4 and S4 indicate that the ideal gas‐phase global energy minimum conformation is not observed in the solid state. Rather, the effects of hydrogen‐bonding and van der Waals interactions in the crystal structure cause the molecules to adopt higher‐energy conformations, which correspond to local minima in the molecular potential energy surface.     

Structural diversity of polynuclear MgxOy cores in magnesium phenoxide complexes

The binuclear complex bis(2,6‐di‐tert‐butyl‐4‐methylphenolato)‐1κO ,2κO‐(1,2‐dimethoxyethane‐1κ²O ,O ′)bis(μ‐phenylmethanolato‐1:2κ²O :O )(tetrahydrofuran‐2κO )dimagnesium(II), [Mg₂(C₇H₇O)₂(C₁₅H₂₃O)₂(C₄H₈O)(C₄H₁₀O₂)] or [(BHT)(DME)Mg(μ‐OBn)₂Mg(THF)(BHT)], (I), was obtained from the complex [(BHT)Mg(μ‐OBn)(THF)]₂ by substitution of one tetrahydrofuran (THF) molecule with 1,2‐dimethoxyethane (DME) in toluene (BHT is O‐2,6‐^t Bu₂‐4‐MeC₆H₄ and Bn is benzyl). The trinuclear complex bis(2,6‐di‐tert‐butyl‐4‐methylphenolato)‐1κO ,3κO‐tetrakis(μ‐2‐methylphenolato)‐1:2κ⁴O :O ;2:3κ⁴O :O‐bis(tetrahydrofuran)‐1κO ,3κO‐trimagnesium(II), [Mg₃(C₇H₇O)₄(C₁₅H₂₃O)₂(C₄H₈O)₂] or [(BHT)₂(μ‐O‐2‐MeC₆H₄)₄(THF)₂Mg₃], (II), was formed from a mixture of Bu₂Mg, [(BHT)Mg(ⁿ Bu)(THF)₂] and 2‐methylphenol. An unusual tetranuclear complex, bis(μ₃‐2‐aminoethanolato‐κ⁴O :O :O ,N )tetrakis(μ₂‐2‐aminoethanolato‐κ³O :O ,N )bis(2,6‐di‐tert‐butyl‐4‐methylphenolato‐κO )tetramagnesium(II), [Mg₄(C₂H₆NO)₆(C₁₅H₂₃O)₂] or Mg₄(BHT)₂(OCH₂CH₂NH₂)₆, (III), resulted from the reaction between (BHT)₂Mg(THF)₂ and 2‐aminoethanol. A polymerization test demonstrated the ability of (III) to catalyse the ring‐opening polymerization of ϵ‐caprolactone without activation by alcohol. In all three complexes (I)–(III), the BHT ligand demonstrates the terminal κO‐coordination mode. Complexes (I), (II) and (III) have binuclear rhomboid Mg₂O₂, trinuclear chain‐like Mg₃O₄ and bicubic Mg₄O₆ cores, respectively. A survey of the literature on known polynuclear Mg_x O_y core types for ArO–Mg complexes is also presented.     

Structural diversity for phosphine complexes of stibenium and stibinidenium cations

Reactions of trimethylphosphine or diphosphines with SbCl(3) in the presence of AlCl(3) or Me(3)SiSO(3)CF(3) give ligand stabilized stibenium and stibinidenium cations. The geometry at each antimony center reveals a variety of environments for antimony that describes new bonding and highlights new directions in the chemistry of the pnictogen elements.     

Structural diversity in dinickel(II) complexes of thiosemicarbazones

2,6-Diformyl-p-cresol serves as a starting point for the generation of multidentate N/O/S chelating agents. Condensation with 4-(X-phenyl) thiosemicarbazide yields the pentadentate ligand having SNONS donor sequences, capable of holding two metal ions in close proximity. The ligands behave as mono/di/tri basic depending on the pH of the medium. Stereochemical diversity in the reaction product of such ligands with nickel(II) chloride at different pH is observed. Sterically demanding substituted ligands in association with various exogenous bridges dictate the geometry and coordination number of such complexes. The compounds were investigated by elemental analysis, molar conductivities, electronic spectra, IR, NMR, FAB mass spectra, TG-DTG, magnetic susceptibility measurements. Varieties of geometries such as square planar, square pyramidal, octahedral and square planar–square pyramidal are observed. Cryomagnetic data for the complexes (79–296 K) can be reproduced by an equation based on the Heisenberg model (H=−2JS₁S₂, S₁=S₂=1). The singlet–triplet splitting, J varies systematically with the coordination geometry about the Ni₂(SNONS) core, with the hydroxo bridged complex exhibiting the greatest degree of antiferromagnetic coupling. The coupling is somewhat weaker for the chloro-bridged complexes. None of the complexes have shown any appreciable antimicrobial activity.     

Characterising the geometric diversity of functional groups in chemical databases

Summary We have developed a program, HookSpace, which provides a simplistic approach to assessing the diversity of molecular databases. The spatial relationship between pairs of intramolecular functional groups can be analysed in a variety of ways to provide both qualitative and quantitative measures of diversity. Results are described and contrasted for two commercially available databases and a combinatorial library of benzodiazepam derivatives. HookSpace highlights the main differences in molecular content of these data sets.     

Structural and functional diagnostics of ultrafine components in condensed high-energy systems

The study deals with octogen (HMX) and aluminum, which are among the most widely used components of condensed high-energy systems. The structure, thermal behavior and combustion parameters were determined for the octogen-based monofuels and octogen-aluminum binary systems at different dispersity of components. Irrespective of differences in thermal behavior, monofuels obtained with standard and ultrafine octogen powders were shown to have virtually identical combustion parameters. In the binary systems, replacement of standard microsized aluminum by ultrafine one increases the combustion rate by a factor of 2.5, and completeness of the metal reaction (oxidation) by a factor of 4.     

Structural diversity in the coordination of amidines and guanidines to monovalent metal halides

A series of structurally characterised, monovalent metal-halide complexes incorporating neutral amidine and guanidine ligands is reported. N,N'-diphenylbenzamidine reacted with copper(I) chloride to afford the bis-ligand complex [CuCl(PhC[NPh][NHPh])2]2 (1), that exists as a chlorine bridged dimer in the solid state, with a non-symmetrical distribution of NH...Cl interactions within the 'Cu2Cl2' metallacycle. In contrast, only one equivalent of the guanidine, Me2NC[NiPr][NHiPr] (2), is coordinated in the copper(I) iodide complex [CuI(Me2NC[NiPr][NHiPr])]2 (3), which was also isolated as the dimer with bridging halide atoms. The molecular structure of the bicyclic guanidine, 1,3,4,6,7,8-hexahydro-2H-pyrimido[1,2-alpha]pyrimidine (hppH), is reported, revealing a hydrogen bridged dimer with extensive delocalisation throughout the ligand framework. Coordination of hppH to lithium chloride afforded the dimeric bis-ligand complex [LiCl(hppH)2]2 (4) in which each hppH molecule interacts with a different chlorine atom of the central 'Li2Cl2' core of the molecule via NH...Cl hydrogen bonding. In contrast the 2:1 ligand to metal complex is formed with silver(I) chloride to afford AgCl(hppH)2 (5), a unique example of a monomeric, three-coordinate silver chloride supported by nitrogen-based ligands. The series of mixed ligand complexes [CuX(hppH)(PPh3)]n (6, X = Cl, n= 1; 7, X = Br, n= 2; 8 X = I, n= 2) have also been synthesised and structurally characterised, allowing comparisons of the relative coordinating behaviour of hppH and PPh3 as neutral donors at copper(I) centres to be made.