Low-valent group-13 chemistry. Theoretical investigation of the structures and relative stabilities of donor-acceptor complexes R(3)E[bond]E'R' and their isomers R(2)E[bond]E'RR'

The results of quantum chemical calculations at the gradient-corrected density functional theory (DFT) level with the B3LYP functional of the donor-acceptor complexes R(3)E[bond]E'R' and their isomers R(2)E[bond]E'RR', where E, E' = B[bond]Tl and R, R' = H, Cl, or CH(3), are reported. The theoretically predicted energy differences between the donor-acceptor form R(3)E[bond]E'R' and the classical isomer R(2)E[bond]E'RR' and the bond dissociation energies of the E[bond]E' bonds are given. The results are discussed in order to show which factors stabilize the isomers R(3)E[bond]E'R'. There is no simple correlation of the nature of the group-13 elements E, E' and the substituents R, R' with the stability of the complexes. The isomers R(3)E[bond]'R' come stabilized by pi donor groups R', while the substituents R may either be sigma- or pi-bonded groups. Calculations of Cl(3)B[bond]BR' [R' = Cl, cyclopentadienyl (Cp), or Cp*] indicate that the Cp* group has a particularly strong effect on the complex form. The calculations show that the experimentally known complex Cl(3)B[bond]BCp* is the strongest bonded donor-acceptor complex of main-group elements that has been synthesized until now. The theoretically predicted B[bond]B bond energy is D(o) = 50.6 kcal/mol. However, the calculations indicate that it should also be possible to isolate donor-acceptor complexes R(3)E[bond]E'R' where R' is a sigma-bonded bulky substituent. Possible candidates that are suggested for synthetic work are the borane complexes (C(6)F(5))(3)B[bond]E'R' and (t)Bu(3)B[bond]E'R' (E' = Al[bond]Tl) and the alane complexes Cl(3)Al[bond]E'R' (E' = Ga[bond]Tl).     

C-O bond cleavage of benzophenone substituted by 4-CH2OR (R = C6H5 and CH3) with stepwise two-photon excitation

The C-O bond cleavage from benzophenone substituted with 4-CH2OR (p-BPCH2OR, 1-3), such as p-phenoxymethylbenzophenone (1, R= C6H5) and p-methoxymethylbenzophenone (2, R= CH3), occurred by a stepwise two-photon excitation during two-color, two-laser flash photolysis. On the other hand, no C-O bond cleavage occurred from p-hydroxymethylbenzophenone (3, R = H). The first 355-nm laser excitation of 1-3 generates p-BPCH2OR in the lowest triplet excited state (T1) which has an absorption at 532 nm. When p-BPCH2OR(T1) is excited with the second 532-nm laser to p-BPCH2OR in the higher triplet excited state (T(n)), the C-O bond cleavage occurred within the laser flash duration of 5 ns. The quantum yields of the C-O bond cleavage during the second 532-nm laser irradiation were found to be 0.015 +/- 0.007 and 0.007 +/- 0.003 for 1 and 2, respectively. Although these values are low, the diminishing 1(T1) or 2(T1) was found to convert, in almost 100% yield, to phenoxyl (C6H5O*) and p-benzoylbenzyl (BPCH2*) radicals or methoxyl (CH3O*) and BPCH2* radicals, respectively. The T(n) excitation energy, the energy barrier along the potential surface between the T(n) states and product radicals, and delocalization of the T(n) state molecular orbital including BP and CH2OR (R = C6H5, CH3, H) moieties are important factors for the occurrence of the C-O bond cleavage. It is found that the C-O bond cleavage and production of free radicals, such as BPCH2*, C6H5O*, and CH3O*, can be performed by a stepwise two-photon excitation. The present study is an example in which the chemical reactions can be selectively initiated from the T(n) state but not from the S1 and T1 states.     

The nature of the N?O bond in amine oxides

Despite the ubiquitous presence of amine oxides in chemistry, there is no consensus about the nature of the N O bond in these compounds. In this work, we have used electron density analysis to investigate the nature of this bond in substituted amine oxides, R₃NO, and have compared it with the nature of the N O bond in hydroxylamines, R₂NOR, and model molecules that have well-established chemical bond character. The results showed that the N O bond length and relative stability are proportional to the inductive effect of the substituents. Quantum chemical topology, natural bond orbitals (NBO), and natural resonance theory (NRT) analyses indicated that the N O bond is polar covalent in all the studied amine oxides, but the ionic contribution is different. NBO and NRT analyses revealed that molecules with more electronegative substituents have strongly delocalized N O and N R bonds, whereas molecules with electropositive substituents have localized bonds.     

Stability of phosphinidenes--are they synthetically accessible?

The relative stability of different singlet phosphinidenes (R-P) has been investigated by using isodesmic reactions. The energies of these reactions with several R groups were calculated with DFT and ab initio methods at different levels of theory. The best stabilising effect on the phosphinidene centre is exhibited by the R'2C=N-group, resulting in a singlet ground state. The analysis of the electron density in the parent H2C=N-P, indicates a considerable double bond character of the PN bond. Further tuning of the C=N pi-bond polarity is possible by variation of the R' substituents. Using trimethylsilyl substituents or incorporating the carbon atom in a pi-withdrawing pentafulvene ring the stabilization and the computed singlet triplet separation increases. The thermodynamics and the kinetics of dimerisation reactions of the most stabilised R'2C=N-P indicates that these compounds are likely synthetic targets.     

Synthesis,structure, and reactivity of some sterically hindered (Silylamino)phosphines

A series of new (silylamino)phosphines that contain sterically bulky silyl groups on nitrogen were prepared by deprotonation/substitution reactions of the hindered disilylamines t-BuR(2)Si(Me(3)Si)NH (1, R = Me; 2, R = Ph) and (Et(3)Si)(2)NH (3). Sequential treatment of the N-lithio derivatives of 1-3 with PCl(3) or PhPCl(2) and MeLi gave the corresponding (silylamino)phosphines t-BuR(2)Si(Me(3)Si)NP(R')Me (5, R = Me, R' = Ph; 6, R = Ph, R' = Me) and (Et(3)Si)(2)NP(R)Me (11, R = Me; 12, R = Ph) in high yields. Two of the P-chloro intermediates t-BuR(2)Si(Me(3)Si)NP(Ph)Cl (7, R = Ph; 9, R = Me) were also isolated and fully characterized. Hydrolysis of 7 afforded the crystalline PH-substituted aminophosphine oxide t-BuPh(2)SiN(H)P(Ph)(=O)H (10). Thermal decomposition of 7 occurred with elimination of Me(3)SiCl and formation of a novel P(2)N(2) four-membered ring system (36) that contains both P(III) and P(V) centers. Reactions of the N-lithio derivatives of amines 1 and 2 with phosphorus trihalides afforded the thermally stable -PF(2) derivatives t-BuR(2)Si(Me(3)Si)NPF(2) (13, R = Me; 14, R = Ph) and the unstable -PCl(2) analogue 17 (R = Ph). Reduction (using LiAlH(4)) of the SiPh-substituted dihalophosphines 14 and 17 gave the unstable parent phosphine t-BuPh(2)Si(Me(3)Si)NPH(2) (15). The P-organo-substituted (silylamino)phosphines underwent oxidative bromination to afford high yields of the corresponding N-silyl-P-bromophosphoranimines t-BuR(2)SiN=P(R')(Me)Br (18, R = R' = Me; 19, R = Me, R' = Ph; 20, R = Ph, R' = Me) and Et(3)SiN=P(R)(Me)Br (23, R = Me; 24, R = Ph). Subsequent treatment of these reactive PBr compounds with lithium trifluoroethoxide or phenoxide produced the corresponding PO derivatives t-BuR(2)SiN=P(R')(Me)OR' ' (25 and 26, R' ' = CH(2)CF(3); 28-30, R' ' = Ph) and Et(3)SiN=P(R)(Me)OR' (31 and 33, R' = CH(2)CF(3); 32 and 34, R = Ph), respectively. Many of the new compounds containing the bulky tert-butyldiphenylsilyl group, t-BuPh(2)Si, were solids that gave crystals suitable for X-ray diffraction studies. Consequently, the crystal structures of three (silylamino)phosphines (6, 7, and 14), one (silylamino)phosphine oxide (10), one N-silylphosphoranimine (30), and the cyclic compound 36 were determined. Among the (silylamino)phosphines, the P-N bond distances [6, N-PMe(2), 1.725(3) A; 7, N-P(Ph)Cl, 1.68(1) A, 14, N-PF(2), 1.652(4) A] decreased significantly as the electron-withdrawing nature of the phosphorus substituents increased. The N-silylphosphoranimine t-BuPh(2)SiN=PMe(2)OPh (30), which is a model system for poly(phosphazene) precursors, had a much shorter P=N distance of 1.512(6) A and a wide Si-N-P bond angle of 166.4(3) degrees. A similar P=N bond distance [1.514(7) A] and Si-N-P angle [169.9(6) degrees ] were observed for the exocyclic P=N-Si linkage in the ring compound 36, while the phosphine oxide 10 had P-N and P=O distances of 1.637(4) and 1.496(3) A, respectively, and a Si-N-P angle of 134.3(2) degrees.     

Apical versus equatorial disposition of substituents in tetraoxyphosphoranes bearing a 1,3,2-dioxaphosphocin ring: implications on apicophilicity in trigonal bipyramidal phosphorus

New spirocyclic (amino/amido)tetraoxyphosphoranes CH(2)(6-t-Bu-4-Me-C(6)H(2)O)(2)P(NRR')(O(2)C(6)Cl(4)) [R = Me, R' = Ph (1), R = R' = i-Pr (2); R = R' = H (3); R = H, R' = Ph (4)] and the isothiocyanatotetraoxyphosphorane CH(2)(6-t-Bu-4-Me-C(6)H(2)O)(2)P(NCS)(O(2)C(6)Cl(4)) (5) have been synthesized. X-ray crystallography for these compounds reveals that -N(Me)Ph, -N(i-Pr)(2), and -NCS groups occupy an apical position whereas -NH(2) and -NHPh groups occupy an equatorial position in a trigonal bipyramidal geometry around phosphorus. These results are in contrast with the common assumption that a sterically bulky and less electronegative substituent [e.g. -N(i-Pr)(2)] should be less apicophilic than a sterically small and more electronegative substituent (e.g. -NH(2)). The possible rationalization for these results is discussed. Variable-temperature ((1)H, (31)P) NMR spectra of these compounds show some unusual features not reported before for pentacoordinate phosphorus. Probable intramolecular processes involving (i) apical-equatorial <--> equatorial-apical exchange, (ii) apical-equatorial <--> equatorial-equatorial exchange, and (iii) boat-chair <--> tub (for the eight-membered ring) interconversion as well as cessation of the P-N bond rotation have been invoked to explain the spectral features.     

Carbon [bond] hydrogen bond activation by titanium imido complexes. Computational evidence for the role of alkane adducts in selective C [bond] H activation

This paper reports calculations that probe the role of R (hydrocarbon) and R' (ligand substituent) effects on the reaction coordinate for C [bond] H activation: Ti(OR')(2)(=NR') + RH --> adduct --> transition state --> (OR')(2)Ti(N(H)R')(R). Compounds with R = H, Me, Et, Vy, cPr, Ph, Cy, Bz, and cubyl are studied using quantum (R' = H, SiH(3), SiMe(3)) and classical (R' = Si(t)Bu(3)) techniques. Calculated geometries are in excellent agreement with data for experimental models. There is little variability in the calculated molecular structure of the reactants, products, and most interestingly, transition states as R and R' are changed. Structural flexibility is greatest in the adducts Ti(OR')(2)(=NR')...HR. Despite the small structural changes observed for Ti(OR')(2)(double bond] NR') with different R', significant changes are manifested in calculated electronic properties (the Mulliken charge on Ti becomes more positive and the Ti [double bond] N bond order decreases with larger R'), changes that should facilitate C [bond] H activation. Substantial steric modification of the alkane complex is expected from R [bond] R' interactions, given the magnitude of Delta G(add) and the conformational flexibility of the adduct. Molecular mechanics simulations of Ti(OSi(t)Bu(3))(2)([double bond] NSi(t)Bu(3))...isopentane adducts yield an energy ordering as a function of the rank of the C [bond] H bond coordinated to Ti that is consistent with experimental selectivity patterns. Calculated elimination barriers compare very favorably with experiment; larger SiH(3) and TMS ligand substituents generally yield better agreement with experiment, evidence that the modeling of the major contributions to the elimination barrier (N [bond] H and C [bond] H bond making) is ostensibly correct. Calculations indicate that weakening the C [bond] H bond of the hydrocarbon yields a more strongly bound adduct. Combining the different conclusions, the present computational research points to the adduct, specifically the structure and energetics of the substrate/Ti-imido interaction, as the main factor in determining the selectivity of hydrocarbon (R) C [bond] H activation.     

Ion-pair dissociation of N2O in the 16.25-16.41 eV: dynamics and electronic structure

The ion-pair dissociation dynamics of N(2)O -->(XUV) N(2)(+)(X (2)Sigma(g)(+), v) + O(-)((2)P(j)) at 16.248, 16.271, 16.389, and 16.411 eV have been studied using the velocity map imaging method and tunable XUV laser. The electronic structures of the ion-pair states have been studied by employing the ab initio quantum chemical calculation. The translational energy distributions and the angular distributions of the photofragments have been measured. The results show that about 40% of available energies are transformed into the translational energies, and the first excited vibrational states are populated most strongly for all four excitation energies. The anisotropy parameters beta are approximately 1. The ab initio calculations at the level of CASSCF6-311++g(3df) show that the equilibrium geometries of the ion-pair states are nonlinear with bond lengths R(N-N) = 1.10 A, R(N-O) = 2.15 A, and bond angle N-N-O = 103 degrees, respectively. The ion-pair states are formed by electron migration from the bonding sigma orbital of N[triple bond]N to the antibonding sigma orbital localized primarily on the O atom. Combining the experimental and theoretical results, it is concluded that the ion-pair dissociation occurs via predissociation of Rydberg states with (1)Sigma(+) symmetry, which converges to the ion-core N(2)O(+)(A (2)Sigma(+)).     

Variable trends in R-X bond dissociation energies (R = Me, Et, i-Pr, t-Bu)

[structure: see text] High level ab initio molecular orbital calculations confirm experimental indications that the effect of alkyl substituents (R = Me, Et, i-Pr, t-Bu) on R-X bond dissociation energies varies considerably according to the nature of X. A simple qualitative explanation in terms of valence-bond theory is presented, highlighting the increasing importance of the stabilization of R-X by the ionic R(+)X(-) configuration for electronegative X substituents (such as F, OH, and OCH(3)).     

Photochemical cleavage and release of para-substituted phenols from alpha-keto amides

In aqueous media alpha-keto amides 4-YC6H4OCH2COCON(R)CH(R')CH3 (5a, R = Et, R' = H; 5b, R = iPr, R' = Me) with para-substituted phenolic substituents (Y = CN, CF3, H) undergo photocleavage and release of 4-YC6H4OH with formation of 5-methyleneoxazolidin-4-ones 7a,b. For both 5a,b quantum yields range from 0.2 to 0.3. The proposed mechanism involves transfer of hydrogen from an N-alkyl group to the keto oxygen to produce zwitterionic intermediates 8a-c that eliminate the para-substituted phenolate leaving groups. The resultant imminium ions H2C=C(OH)CON+(R)=C(R')CH3 9a,b cyclize intramolecularly to give 7a,b. The quantum yields for photoelimination decrease in CH3CN, CH2Cl2, or C6H6 due to competing cyclization of 8a,b to give oxazolidin-4-one products which retain the leaving group 4-YC6H4O- (Y = H, CN). A greater tendency to undergo cyclization in nonaqueous media is observed for the N,N-diethyl amides 5a than the N,N-diisopropyl amides 5b. With para electron releasing groups Y = CH3 and OCH3 quantum yields for photoelimination significantly decrease and 1,3-photorearrangment of the phenolic group is observed. The 1,3-rearrangement involves excited state ArO-C bond homolysis to give para-substituted phenoxyl radicals, which can be observed directly in laser flash photolysis experiments.     

Stepwise photocleavage of C-O bonds of bis(substituted-methyl)naphthalenes with stepwise excitation by two-color two-laser and three-color three-laser irradiations

Stepwise photocleavage of naphthylmethyl-oxygen (C-O) bonds of mono(substituted-methyl)naphthalenes [1- and 2-ROCH2Np, R = 4-benzoylphenyl (BP), phenyl (Ph), and methyl (CH3)] and bis(substituted-methyl)naphthalenes [1,8-(ROCH2)2Np and 1,4-(ROCH2)2Np, R = BP and Ph] was observed to give the naphthylmethyl radicals (NpCH2* or ROCH2NpCH2*) in almost 100% yield with two-step or three-step excitation by the two-color two-laser or three-color three-laser irradiation, respectively, at room temperature. The C-O bond cleavage quantum yields of 1-PhOCH2Np, 2-PhOCH2Np, 1,8-(PhOCH2)2Np, and 1,4-(PhOCH2)2Np were higher than those of 1-BPOCH2Np, 2-BPOCH2Np, 1,8-(BPOCH2)2Np, and 1,4-(BPOCH2)2Np. No C-O bond cleavage occurred from 1,8-(HOCH2)2Np and 2-CH3OCH2Np in the higher triplet excited state (T(n)). The experimental results show that the C-O bond cleavage was determined not only by the position of the substituents on Np but also by the type of the substituents. The C-O bond cleavage of 1-ROCH2Np was more efficient than that of 2-ROCH2Np. In the case of 1,8-(ROCH2)2Np and 1,4-(ROCH2)2Np (R = BP and Ph), the first C-O bond cleavage from the T(n) states occurred to give ROCH2-substituted naphthylmethyl radicals (1,8- and 1,4-ROCH2NpCH2*) when the T1 states, generated with the 308-nm first laser irradiation, were excited using the 430-nm second laser. The second C-O bond cleavage occurred when 1,8- and 1,4-ROCH2NpCH2* in the ground state [1,8- and 1,4-ROCH2NpCH2*(D0)] were excited to the excited states [1,8- and 1,4-ROCH2NpCH2*(D(n))] using the third 355-nm laser during the three-color three-laser flash photolysis at room temperature. It was revealed that acenaphthene was produced as the final product during the stepwise C-O bond cleavages of 1,8-(BPOCH2)2Np and 1,8-(PhOCH2)2Np. This is a successful example of stepwise cleavage of two equivalent C-O bonds in a molecule using the three-color three-laser photolysis method.     

Reactions of amides with organoaluminum compounds: factors affecting the coordination mode of aluminum amidates

Factors affecting the coordination mode of an amidato group on aluminum will be presented. The reaction of N-tert-butylalkylacetamide ((t)BuNHCR([double bond]O)) with 1.1 molar equiv of Me(3)Al in refluxing hexane affords a pentacoordinated, dimeric compound [Me(2)Al[eta(2)-(t)BuNC(R)(mu(2)-O)]](2) (3, R = p-(t)Bu-C(6)H(4); 4, R = 2,6-F,F-C(6)H(3); 5, R = Me; 6, R = CF(3); 7, R = p-F(3)C-C(6)H(4)). However, in the presence of 2.2 molar equiv of Me(3)Al, N-tert-butyl-4-tert-butylbenzamide ((t)BuNHC(p-(t)Bu-C(6)H(4))([double bond]O in refluxing hexane gives [Me(2)Al[eta(2)-(t)BuNC(p-(t)Bu-C(6)H(4))(mu(2)-O)]AlMe(3)], 8. In contrast, the reaction of R'NHCR' '([double bond]O) with 1 molar equiv of R(3)Al at room temperature produces tetracoordinated, dimeric, eight-membered ring aluminum compounds [R(2)Al[mu,eta(2)-R'NC(R' ')O]](2) (9, R = Me, R' = 2,6-(i)Pr, (i)()Pr-C(6)H(3), R' ' = Ph; 10, R = Me, R' = (i)Bu, R' ' = Ph; 11, R = Et, R' = Bn, R' ' = Ph; 12, R = Me, R' = Ph, R' ' = CF(3); 13, R = Me, R' = Bn, R' ' = CF(3)). On the other hand, 4'-chlorobenzanilide ((p-Cl-C(6)H(4))NHCPh([double bond]O)) reacts with R(3)Al to produce trimeric, twelve-membered ring aluminum compounds [R(2)Al[mu, eta(2)-(p-Cl-C(6)H(4))NC(Ph)O]](3) (14, R = Me; 15, R = Et). Furthermore, the reaction of 2'-methoxybenzanilide with 1 molar equiv of Me(3)Al in hexane yields a dinuclear aluminum complex [Me(2)Al(o-OMe-Ph)NC(Ph)(O)AlMe(3)], 16.     

Sila-metalation route to hydrido(trialkylsilyl)silyllithiums

The proton abstraction (sila-metalation) of trialkylsilyl-substituted dihydridosilanes with t-BuLi or LDA in THF was found to be a convenient route to the corresponding silyllithiums (RR'SiHLi; 1a, R, R' = t-BuMe(2)Si; 1b, R, R' = Me(3)Si; 1c, R, R' = i-Pr(2)MeSi; 1d, R = t-BuMe(2)Si, R' = 4-methylphenyl). Hydridosilylithium 1a was isolated as air- and moisture-sensitive, but thermally stable, colorless crystals. X-ray analysis has shown that 1a is dimeric in the solid state, where two lithium atoms bridge between anionic silicon atoms forming a parallelogram, each lithium atom is coordinated by one THF molecule, and the Si-H hydrogen atoms are in the plane of the parallelogram. X-ray analysis has shown that (t-BuMe(2)Si)(2)GeHLi (5) has a dimeric structure similar to that of 1a.     

Different C-C coupling reactions of permethyltitanocene and permethylzirconocene with disubstituted 1,3-butadiynes

Herein we describe different C-C coupling reactions of permethyltitanocene and -zirconocene with disubstituted 1,3-butadiynes. The outcomes of these reactions vary depending on the metals and the diyne substituents. The reduction of [Cp2*MCl2] (Cp* = C5Me5; M = Ti, Zr) with Mg in the presence of disubstituted butadiynes RC triple bond C-C triple bond CR' is suitable for the synthesis of different C-C coupling products of the diyne and the permethylmetallocenes, and provides a new method for the generation of functionalized pentamethyl-cyclopentadienyl derivatives. For M = Zr and R = R' = tBu, the reaction gives, by a twofold activation of one pentamethylcyclopentadienyl ligand, the complex [Cp*Zr[-C(=C=CHtBu)-CHtBu-CH2-eta5-C5Me3-CH2-]] (3), containing a fulvene ligand that is coupled to the modified substrate (allenic subunit). When using the analogous permethyltitanocene fragment "Cp2*Ti", the reaction depends strongly on the substituents R and R'. The coupling product of the butadiyne with two methyl groups of one of the pentamethylcyclopentadienyl ring systems, [Cp*Ti[eta5-C5Me3-(CH2-CHR-eta2-C2-CHR'-CH2)]], is obtained with R = R' = tBu (4) and R = tBu, R' = SiMe3 (5). In these complexes one pentamethylcyclopentadienyl ligand is annellated to an eight-membered ring with a C-C triple bond, which is coordinated to the titanium center. A different activation of both pentamethylcyclopentadienyl ligands is observed for R = R' = Me, resulting in the complex [[eta5-C5Me4(CH2)-]Ti[-C(=CHMe)-C(=CHMe)-CH2-eta5-C5Me4]] (6), which displays a fulvene as well as a butadienyl-substituted pentamethylcyclopentadienyl ligand. The influence exerted by the size of the metal is illustrated in the reaction of [Cp2*ZrCl2] with MeC triple bond C-C triple bond CMe. Here the five-membered metallacyclocumulene complex [Cp2*Zr(eta4-1,2,3,4-MeC4Me)] (7) is obtained. The reaction paths found for R = R' = Me are identical to those formerly described for R = R' = Ph.     

The cycloadditions of various substituted carbenes, silylenes, and germylenes onto the diamond (100) surface: a theoretical exploration

The cycloadditions of 21 singlet substituted carbenes, silylenes, and germylenes onto the diamond (100) surface have been theoretically studied by means of density functional theory coupled with effective cluster models. The calculated reaction energies and reaction pathways have disclosed that the substituents play an important effect on the reaction profiles for the additions of carbenes, silylenes, and germylenes onto the diamond (100) surface. Our theoretical investigations illustrate that, irrespective of carbenes, silylenes, and germylenes, the cycloadditions of those with electropositive substituents (such as H and CH(3)) onto diamond (100) are much more favorable than those with electronegative and pi-donating substituents (such as F and NH(2)) both thermodynamically and kinetically. In broad perspective, we believe that a similar reactivity trend can also be extended to that of Si (100), Ge (100), fullerene, single-walled carbon nanotube, disilenes, digermenes, silenes, and germenes because all of these materials feature an analogous bonding motif.     

Electron density deformations provide new insights into the spectral shift of rhodopsins

Spectral shifts of rhodopsin, which are related to variations of the electron distribution in 11‐cis‐retinal, are investigated here using the method of deformed atoms in molecules. We found that systems carrying the M207R and S186W mutations display large perturbations of the π‐conjugated system with respect to wild‐type rhodopsins. These changes agree with the predicted behavior of the bond length alternation (BLA) and the blue shifts of vertical excitation energies of these systems. The effect of the planarity of the central and Schiff‐base regions of retinal chain on the electronic structure of the chromophore is also investigated. By establishing nonlinear polynomial relations between BLA, chain distortions, and vertical excitation energies, we are also able to provide a semiquantitative approach for the understanding of the mechanisms regulating spectral shifts in rhodopsin and its mutants. © 2013 Wiley Periodicals, Inc.     

Photoinduced charge shift as the driving force for the excited-state relaxation of analogues of the Photoactive Yellow Protein chromophore in solution

Transient absorption spectroscopy with subpicosecond laser excitation is used to probe the primary photoinduced processes in two ester analogues (linear and cyclic) of the Photoactive Yellow Protein (PYP) chromophore in solution. The PYP chromophore is the thioester derivative of the deprotonated trans-4-hydroxycinnamic acid. The results found for the ester analogues are compared to those previously obtained for the deprotonated trans-4-hydroxycinnamic acid and its amide and thioester derivatives. Special attention is paid to the role of the electron donor–acceptor character of the chromophore substituents and of the molecular flexibility on the excited-state relaxation pathway and kinetics. Solvent viscosity and polarity effects on the kinetics are also analyzed. Two hypothetical relaxation pathways involving a one-bond flip mechanism are proposed to explain the observation of a transient species in the course of the excited-state relaxation of the analogues bearing the stronger electron-acceptor substituents. In the first one, the intermediate is described as a perp ground state, whereas the second one involves a twisted excited state where the conformation of the ethylenic bond deviates from 90°. In both cases, the relaxation of the transient state may lead or not to the cis isomer.     

Subtle reactivity patterns of non-heteroatom-substituted manganese alkynyl carbene complexes in the presence of phosphorus probes

The non-heteroatom-substituted manganese alkynyl carbene complexes (eta5-MeC5H4)(CO)2Mn=C(R)C[triple bond]CR'(3; 3a: R = R'= Ph, 3b: R = Ph, R'= Tol, 3c: R = Tol, R'= Ph) have been synthesised in high yields upon treatment of the corresponding carbyne complexes [eta5-MeC5H4)(CO)2Mn[triple bond]CR][BPh4]([2][BPh4]) with the appropriate alkynyllithium reagents LiC[triple bond]CR' (R'= Ph, Tol). The use of tetraphenylborate as counter anion associated with the cationic carbyne complexes has been decisive. The X-ray structures of (eta5-MeC5H4)(CO)2Mn=C(Tol)C[triple bond]CPh (3c), and its precursor [(eta5-MeC5H4)(CO)2Mn=CTol][BPh4]([2b](BPh4]) are reported. The reactivity of complexes toward phosphines has been investigated. In the presence of PPh3, complexes act as a Michael acceptor to afford the zwitterionic sigma-allenylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R)=C=C(PPh3)R' (5) resulting from nucleophilic attack by the phosphine on the remote alkynyl carbon atom. Complexes 5 exhibit a dynamic process in solution, which has been rationalized in terms of a fast [NMR time-scale] rotation of the allene substituents around the allene axis; metrical features within the X-ray structure of (eta5-MeC5H4)(CO)2MnC(Ph)=C=C(PPh3)Tol (5b) support the proposal. In the presence of PMe3, complexes undergo a nucleophilic attack on the carbene carbon atom to give zwitterionic sigma-propargylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R)(PMe3)C[triple bond]CR' (6). Complexes 6 readily isomerise in solution to give the sigma-allenylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R')=C=C(PMe3)R (7) through a 1,3 shift of the [(eta5-MeC5H4)(CO)2Mn] fragment. The nucleophilic attack of PPh2Me on 3 is not selective and leads to a mixture of the sigma-propargylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R)(PPh(2)Me)C[triple bond]CR' (9) and the sigma-allenylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R)=C=C(PPh(2)Me)R' (10). Like complexes 6, complexes 9 readily isomerize to give the sigma-allenylphosphonium complexes (eta5-MeC5H4)(CO)2MnC(R')=C=C(PPh2Me)R'). Upon gentle heating, complexes 7, and mixtures of 10 and 10' cyclise to give the sigma-dihydrophospholium complexes (eta5-MeC5H4)(CO)2MnC=C(R')PMe2CH2CH(R)(8), and mixtures of complexes (eta5-MeC5H4)(CO)2MnC=C(Ph)PPh2CH2CH(Tol)(11) and (eta5-MeC5H4)(CO)2MnC=C(Tol)PMe2CH2CH(Ph)(11'), respectively. The reactions of complexes 3 with secondary phosphines HPR(1)(2)(R1= Ph, Cy) give a mixture of the eta2-allene complexes (eta5-MeC5H4)(CO)2Mn[eta2-{R(1)(2)PC(R)=C=C(R')H}](12), and the regioisomeric eta4-vinylketene complexes [eta5-MeC5H4)(CO)Mn[eta4-{R(1)(2)PC(R)=CHC(R')=C=O}](13) and (eta5-MeC5H4)(CO)Mn[eta4-{R(1)(2)PC(R')=CHC(R)=C=O}](13'). The solid-state structure of (eta5-MeC5H4)(CO)2Mn[eta2-{Ph2PC(Ph)=C=C(Tol)H}](12b) and (eta5-MeC5H4)(CO)Mn[eta4-{Cy2PC(Ph)=CHC(Ph)=C=O}](13d) are reported. Finally, a mechanism that may account for the formation of the species 12, 13, and 13' is proposed.     

Coupled-cluster studies of the lowest excited states of the 11-cis-retinal chromophore

The first few excited states of the 11-cis-retinal (PSB11) chromophore have been studied at the coupled-cluster approximative singles and doubles (CC2) level using triple-zeta quality basis sets augmented with double sets of polarisation functions. The two lowest vertical excitation energies of 2.14 and 3.21 eV are in good agreement with recently reported experimental values of 2.03 and 3.18 eV obtained in molecular beam measurements. Calculations at the time-dependent density functional theory (TDDFT) level using the B3LYP hybrid functional yield vertical excitation energies of 2.34 and 3.10 eV for the two lowest states. Zero-point vibrational energy (ZPVE) corrections of -0.09 and -0.17 eV were deduced from the harmonic vibrational frequencies for the ground and excited states calculated at the density functional theory (DFT) and TDDFT level, respectively, using the B3LYP hybrid functional.