Determination of molecular weight profile for a bioactive beta-(1-->3) polysaccharides (Curdlan)

This paper focuses on the development of methodology based on MALDI-TOF mass spectrometry for evaluation of molecular weight profile of the water-insoluble portion of an extracellular polysaccharide, i.e. Curdlan. As previously demonstrated, MALDI analysis of water-insoluble Curdlan fraction gave number-average and weight-average molecular weights of 8000 and 8700 Da, respectively [T.W.D. Chan, K.Y. Tang, Rapid Commun. Mass Spectrom. 17 (2003) 887]. To validate the MALDI determined molecular weight information, several additional analytical schemes were used to analysis the water-insoluble Curdlan fraction. In all cases, the water-insoluble Curdlan sample was fractionated by gel permeation chromatography (GPC) using Sephadex G-75 column. The of low-mass and narrow distributed polysaccharide fractions were obtained by MALDI-MS. Good linearity was found in the calibration plot constructed from the measured -values and the corresponding elution time/volume. The relative quantity of various fractionated samples was then measured using three different approaches. These include (a) direct refractometric analysis; (b) UV-vis absorption analysis of the Aniline Blue stained sample; and (c) GC-MS analysis of the hydrolyzed and TMS-derivatized sample. Using results obtained from theses quantification methods and the correlation function between the GPC retention time and , the MW and MWD of water-insoluble Curdlan were obtained. Our results demonstrated that the previous use of MALDI methods for measuring and polydispersity (PD) of water-insoluble Curdlan (with and without GPC fractionation) were unreliable. However, by standardizing the narrow distributed polysaccharides using MALDI-MS method, reliable molecular weight information for dispersed polysaccharides could be obtained. The and PD of the water-insoluble Curdlan were found to be 22,000, 31,500 Da and 1.40, respectively.     

Influence of noncontractile motion of plasmalemma upon cotton fiber cell wall structure

Unusual noncontractile motion in vivo within the fibers growing on cotton ovules was found for four cotton genotypes. Structural investigations have shown that, in addition to the active motion related to fiber cell growth, a simultaneous spiral rotation of the cytoplasmic membrane occurs. Due to translational growth of the fiber cell apices and spiral rotation of plasmalemma, the fibers of cotton cultivars take on a twisted, corkscrew-like external shape. Optical microphotos illustrate the formation process of the fiber cell wall at different stages of growth and noncontractile motion in cotton fiber cells.     

Fast molecular mass and size characterization of polysaccharides using asymmetrical flow field-flow fractionation-multiangle light scattering

Asymmetrical flow field-flow fractionation (asymmetrical flow FFF), connected on-line to multi-angle light scattering detection (MALS) was shown here to be an efficient method for size characterization of pullulan standards and dextrans ranging from 20 000 up to 2 000 000 in molecular mass. The characterization of molecular mass and the molecular mass distribution of these polysaccharides is often complex and may require different methods. Using asymmetrical flow FFF-MALS, information was obtained not only about molecular mass and molecular mass distribution but also about hydrodynamic size as well as radius of gyration and conformation. The analysis time was very short, often below 5 min. It was shown that the pullulan standards have a narrow molecular mass distribution compared to the more polydisperse dextrans. Obtained molecular masses and distributions were in good agreement with data from the manufacturer. The dextrans, especially at high molecular mass, were found to have a more compact structure than the pullulans in both water and 0.1 M NaCl.     

CWLy-SVM: A support vector machine-based tool for identifying cell wall lytic enzymes

Cell wall lytic enzymes, as an important biotechnical tool in drug development, agriculture and the food industry, have attracted more research attention. In this research, the accurate identification of cell wall lytic enzymes is one of the key and fundamental tasks. In this study, in order to eliminate the inefficiency of in vitro experiments, a support vector machine-based cell wall lytic enzyme identification model was constructed using bioinformatics. This machine learning process includes feature extraction, feature selection, model training and optimization. According to the jackknife cross validation test, this model obtained a sensitivity of 0.853, a specificity of 0.977, an MCC of 0.845 and an AUC of 0.915. These benchmark results demonstrate that the proposed model outperforms the state-of-the-art method and that it has powerful cell wall lytic enzyme identification ability. Furthermore, we comprehensively analyzed the selected optimal features and used the proposed model to construct a user friendly web server called the CWLy-SVM to identify cell wall lytic enzymes, which is available at http://server.malab.cn/CWLy-SVM/index.jsp.     

Recent results on the biochemistry of the cell wall lipopolysaccharides of Salmonella bacteria

Lipopolysaccharides, which are located in the cell wall of gram-negative bacteria, are characterized by their biological versatility. They represent the O antigens of the bacteria, they are potent endotoxins, and they often function as the receptor sites for bacteriophages. The study of the mode of action of lipopolysaccharides and the search for structures in the macromolecules that are responsible for biological activity became promising when principles of the chemical fine structure of lipopolysaccharides were identified. The following review summarizes the results of recent investigations regarding the structure of lipopolysaccharides, their biosynthesis and its genetic determination.     

Molecular associations of [2.2]paracyclophanearylhydrazones with organic acceptors,VIII

Summary Molecular complexes of mono and disubstituted [2.2]paracyclophanehydrazones with organic acceptors have been studied by means of thermodynamic and spectroscopic properties. Furthermore, the enhancement of the donor strength, induced by the hydrazono group, is viewed in the light of substituent as well as transannular effects.

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Molekulare Assoziation von [2.2]Paracyclophanarylhydrazonen mit organischen Akzeptoren, 8. Mitt.

Zusammenfassung Es wurden Molekülkomplexe von mono- und disubstituierten [2.2]Paracyclophanarylhydrazonen mit organischen Akzeptoren mittels thermodynamischer und spektroskopischer Methoden untersucht. Zusätzlich wird der Anstieg in der Donorstärke, der von der Hydrazonogruppe induziert wird, im Hinblick auf Substituenten- und auch transannulare Effekte diskutiert.

     

Introducing porous graphitized carbon liquid chromatography with evaporative light scattering and mass spectrometry detection into cell wall oligosaccharide analysis

Separation and characterization of complex mixtures of oligosaccharides is quite difficult and, depending on elution conditions, structural information is often lost. Therefore, the use of a porous-graphitized-carbon (PGC)-HPLC-ELSD-MSⁿ-method as analytical tool for the analysis of oligosaccharides derived from plant cell wall polysaccharides has been investigated. It is demonstrated that PGC-HPLC can be widely used for neutral and acidic oligosaccharides derived from cell wall polysaccharides. Furthermore, it is a non-modifying technique that enables the characterization of cell wall oligosaccharides carrying, e.g. acetyl groups and methylesters. Neutral oligosaccharides are separated based on their size as well as on their type of linkage and resulting 3D-structure. Series of the planar β-(1,4)-xylo- and β-(1,4)-gluco-oligosaccharides are retained much more by the PGC material than the series of β-(1,4)-galacto-, β-(1,4)-manno- and α-(1,4)-gluco-oligosaccharides. Charged oligomers such as α-(1,4)-galacturonic acid oligosaccharides are strongly retained and are eluted only after addition of trifluoroacetic acid depending on their net charge. Online-MS-coupling using a 1:1 splitter enables quantitative detection of ELSD as well as simple identification of many oligosaccharides, even when separation of oligosaccharides within a complex mixture is not complete. Consequently, PGC-HPLC-separation in combination with MS-detection gives a powerful tool to identify a wide range of neutral and acidic oligosaccharides derived from various cell wall polysaccharides.     

Molecular interactions of plant and algal polysaccharides

This article presents an overview of the interaction in solution of certain plant and algal polysaccharides with cations and also of their interaction in admixture with other polysaccharides and proteins. The mechanism of gelation of pectin and alginate in the presence of calcium ions is discussed together with the specific binding of potassium ions to kappa carrageenan and its influence on the coil–helix transition. The associative and segregative phase behaviour that is encountered in aqueous solutions of mixed polysaccharide systems is considered together with the formation of the soluble and insoluble complexes in mixtures of polysaccharides and proteins.     

Cellulose synthesized by Acetobacter xylinum in the presence of plant cell wall polysaccharides

Acetobacter xylinum was cultured in Schramm–Hestrin (SH) medium containing glucuronoxylan (xylan medium) or pectin (pectin medium). Loose bundles of cellulose microfibrils were formed in the xylan medium. In contrast the cellulose ribbons formed in the pectin medium were the same as those normally formed in SH medium.The periodic acidthiocarbohydrazidesilver proteinate method indicated that positive reacted substances located along cellulose microfibrils formed in both mediums. Freeze-fracture and deepetching electron microscopy also revealed that polysaccharides exist around cellulose microfibrils. X-ray diffractometry and Fourier Transform In-frared spectroscopy demonstrated that the addition of xylan induced a change in the ratio of cellulose I and I. Electron diffraction analysis revealed that xylan discontinuously affected the crystalline structure of cellulose microfibrils. Pectin did not have this effect. Glucuronoxylan in the medium prevented the assembly of cellulose     

车前子多糖的测定方法研究

建立了一种准确测定车前子中多糖的方法。采用苯酚-硫酸法测定车前子中多糖量,以木糖作为标准对照物,检测波长480 nm。实验结果表明,车前子中多糖平均值为9.04%,平均加标回收率为98.2%,RSD=1.7%(n=6)。此测定方法适用于车前子多糖含量的测定,也可为其他戊糖含量高的多糖测定提供参考。     

Synthesis of the repeating trisaccharide unit of the cell wall lipopolysaccharide of Escherichia coli type 8

NIS/TfOH mediated glycosidation of methyl 3,4,6-tri-O-benzyl-α-d-mannopyranoside with phenyl 2-O-acetyl-3,4,6-tri-O-benzyl-1-thio-α-d-mannopyranoside furnished the corresponding disaccharide derivative in excellent yield and α-selectivity. Zémplen deacetylation of the same followed by reaction with BSP/Tf₂O-preactivated phenyl 4,6-O-benzylidene-2,3-di-O-benzyl-1-thio-α-d-mannopyranoside generated methyl 4,6-O-benzylidene-2,3-di-O-benzyl-β-d-mannopyranosyl-(1→2)-3,4,6-tri-O-benzyl-α-d-mannopyranosyl-(1→2)-3,4,6-tri-O-benzyl-α-d-mannopyranoside in very good yield and excellent β-selectivity. Pd/C catalyzed hydrogenation of the latter finally afforded the repeating trisaccharide of Escherichia coli 8 O-antigen as its methyl glycoside.     

Solvent- and Temperature-Dependent Assembly in Monolayer Films of a Ferrocene-Naphthyridine Hybrid on HOPG

The formation of a monolayer film of bis-naphthyridyl ferrocene on highly oriented pyrolytic graphite (HOPG) at ambient conditions is demonstrated. The films are prepared by drop casting from different solvents. The microscopic structure of the films is understood using atomic force microscopy (AFM) and scanning tunnelling microscopy (STM). The analysis reveals two different types of Phases (I and II) in the films and the relative percentage of these phases depends on the nature of the solvents used for the preparation and the thermodynamical condition. Solvents like methanol, acetonitrile and DMF exclusively select Phase-I, whereas acetone and ethanol show a mix of both phases at room temperature. The different phases are formed by different conformers of the molecule. We also show that the selectivity of one of the phases over the other is related to the difference in the energetics for the formation of these phases.     

The implication of chemical extraction treatments on the cell wall nanostructure of softwood

Spruce wood was subjected to well-defined extraction treatments with sodium chlorite (NaClO₂) for delignification, as well as with sodium hydroxide (NaOH) at different concentrations for extraction of hemicelluloses. The corresponding changes of the macromolecular polymer assembly were investigated by small-angle X-ray scattering (SAXS). Measurements with Fourier-transform infrared (FTIR) spectroscopy and wide-angle scattering (WAXS) gave qualitative information about the effectiveness of the extraction process, while the scattering experiments provided information about the regularity and typical dimensions of the molecular structures. The scattering data indicated that delignification had only a moderate effect on the structural organisation of the cell wall, while further extraction with NaOH induced considerable nanostructural changes.     

Imaging the cell wall of living single yeast cells using surface-enhanced Raman spectroscopy

The surface of a living yeast cell (Saccharomyces cerevisiae strain W303-1A) has been labeled with silver (Ag) nanoparticles that can form nanoaggregates which have been shown to have surface-enhanced Raman scattering (SERS) activity. The cell wall of a single living yeast cell has been imaged by use of a Raman microspectroscope. The SERS spectra measured from different Ag nanoaggregates were found to be different. This can be explained on the basis of detailed spectral interpretation. The SERS spectral response originates from mannoproteins which cover the outermost regions of the yeast cell wall. Analysis of SERS spectra from the cell wall and the extracted mannoproteins from the yeast has been performed for the clarification of variation in SERS spectra.     

The role of ester groups in resistance of plant cell wall polysaccharides to enzymatic hydrolysis

Xylan backbones in native plant cell walls are extensively acety-lated. Previously, no direct investigations as to their role in cellulolytic enzyme resistance have been done, though indirect results point to their importance. An in vitro deesterification of aspen wood and wheat straw has been completed using hydroxylamine solutions. Yields of 90% acetyl ester removal for both materials have been accomplished, with little disruption of other fractions (i.e., lignin). Apparently, as the xylan becomes increasingly deacetylated, it becomes 5–7 times more digestible. This renders the cellulose fraction more accessible, and 2–3 times more digestible. This effect levels off near an acetyl removal of 75%, where other resistances become limiting.     

Comprehensive review in moisture retention mechanism of polysaccharides from algae,plants, bacteria and fungus

Polysaccharides have attracted much attention due to their significant bio-activities. This review aims to summarize the main polysaccharides sources of related polysaccharides from algae, plants, fungus, and bacteria, and give insights into the structure–activity relationship between the moisture retention and structural characteristics of polysaccharides. The molecular weight, functional groups, polysaccharide modifications and apparent structure of polysaccharides are closely related to the moisturizing properties of polysaccharides in terms of moisturizing conformation. Based on recent moisturizing pieces of evidence, we propose a new framework focusing on the moisturizing intrinsic and extrinsic mechanisms. Polysaccharides molecular weight has different effects on moisturizing property. The extrinsic moisturization is mainly via the formation of hydrogen bonds between polysaccharides, the intrinsic moisturizing is mainly by regulating the production of some tight junction proteins. Accordingly, this review could further open the door for the production and application of polysaccharides as novel moisturizing agents in the cosmetic field.     

分子识别在纳米材料组装中的应用

分子识别应用于纳米材料组装中的研究正受到人们的广泛关注,并逐渐成为超分子化学研究领域中的一个热点。本文对近年来利用分子识别实现纳米材料的组装及可控组装的研究工作进行了综述,并对该领域的研究前景进行了展望。     

An olefin cross metathesis approach to C-disaccharide analogs of the α-d-arabinofuranosyl-(1→5)-α-d-arabinofuranoside motif found in the mycobacterial cell wall

Reported is the synthesis of a C-disaccharide analog of the α-d-Araf-(1→5)-α-d-Araf motif present in the cell wall of mycobacteria, including the human pathogen Mycobacterium tuberculosis. The key step is an olefin cross metathesis reaction that proceeds in excellent yield and which can be carried out on mmol scale.