Searching lab on a chip literature: the need for a glossary of terms and concepts in a multidisciplinary environment

This paper investigates the problem of searching literature in a multidisciplinary environment. It is found that much relevant literature is not found because other disciplines use a different terminology, different units, or slightly different (but related) concepts. The paper suggests some approaches to enhance interdisciplinary understanding and improve exchange of ideas and literature.     

Potentiometric determination of aqueous dissociation constants of flavonols sparingly soluble in water

Two different approaches were evaluated and used to estimate the aqueous pK(a) values of some flavonols sparingly soluble in water (morin, fisetin and quercetin) from their pK(a) values in methanol/water mixtures obtained by potentiometry. Both approaches lead to similar results, although one of them requires only one pK(a) value at one unique methanol/water mixture, whereas the other (the classical Yasuda-Shedlovsky plot) requires several pK(a) data at different methanol/water mixtures. Thus, the first approach is recommended because it is faster and simpler. The automated potentiometric method is strongly recommended for pK(a) determination of these types of compounds because of its simplicity and speed of operation.     

Soft matter lithium salt electrolytes: ion conduction and application to rechargeable batteries

Abstract  

Soft matter provides diverse opportunities for the development of electrolytes for all solid state lithium batteries. Here we review soft matter solid electrolytes for lithium batteriesthat are primarily obtained starting from liquid electrolytic systems. This concept of solid electrolyte synthesis from liquid is significantly different from prevalent approaches. The novelty of our approach is discussed in the light of various fundamental issues and in relation to its application to rechargeable lithium batteries.     

Engineering Plasmonic Environments for 2D Materials and 2D-Based Photodetectors

Two-dimensional layered materials are considered ideal platforms to study novel small-scale optoelectronic devices due to their unique electronic structures and fantastic physical properties. However, it is urgent to further improve the light–matter interaction in these materials because their light absorption efficiency is limited by the atomically thin thickness. One of the promising approaches is to engineer the plasmonic environment around 2D materials for modulating light–matter interaction in 2D materials. This method greatly benefits from the advances in the development of nanofabrication and out-plane van der Waals interaction of 2D materials. In this paper, we review a series of recent works on 2D materials integrated with plasmonic environments, including the plasmonic-enhanced photoluminescence quantum yield, strong coupling between plasmons and excitons, nonlinear optics in plasmonic nanocavities, manipulation of chiral optical signals in hybrid nanostructures, and the improvement of the performance of optoelectronic devices based on composite systems.     

Methods for the extraction of microplastics in complex solid,water and biota samples

The widespread distribution of plastics, their persistence and ability to act as a vector of toxic chemicals has rendered them concerning emergent pollutants. The quantification of these contaminants is highly relevant for the evaluation of anthropogenic impacts on aquatic and terrestrial ecosystems and dependent of the efficacy of methods to separate microplastics from environmental matrices. Little information is available about the microplastic extraction methods on complex samples – i.e. samples with multiple types of matrices. Herein, methods for the separation of microplastics from complex samples are summarized and discussed based on their advantages and drawbacks focused on a comparative analysis of their efficiency on organic matter removal, polymer recovery and preservation of plastic integrity. The efficiency on microplastic recovery and organic matter reduction, as well as the examination of the effects of treatments on plastics are closely linked to the density and digestion approaches selected, the polymer features and the environmental matrix analyzed. High-density salt solutions are more effective for density separation, while oxidative methods have recurrently shown better rates of organic matter reduction (particularly in vegetal-rich samples) and plastic recovery, with little impact on plastics, while 10 % KOH has been described as highly efficient in samples containing animal organic matter. This comparative analysis highlights the benefits and limitations of different approaches for the analysis of microplastics in complex samples which may be helpful for the optimization and harmonization of the methods.     

Atoms and bonds in molecules and chemical explanations

The concepts of atoms and bonds in molecules which appeared in chemistry during the nineteenth century are unavoidable to explain the structure and the reactivity of the matter at a chemical level of understanding. Although they can be criticized from a strict reductionist point of view, because neither atoms nor bonds are observable in the sense of quantum mechanics, the topological and statistical interpretative approaches of quantum chemistry (quantum theory of atoms in molecules, electron localization function and maximum probability domain) provide consistent definitions which accommodate chemistry and quantum mechanics.     

Practical approaches to fast gas chromatography-mass spectrometry

Fast gas chromatography–mass spectrometry (GC–MS) has the potential to be a powerful tool in routine analytical laboratories by increasing sample throughput and improving laboratory efficiency. However, this potential has rarely been met in practice because other laboratory operations and sample preparation typically limit sample throughput, not the GC–MS analysis. The intent of this article is to critically review current approaches to fast analysis using GC–MS and to discuss practical considerations in addressing their advantages and disadvantages to meet particular application needs. The practical ways to speed the analytical process in GC and MS individually and in combination are presented, and the trade-offs and compromises in terms of sensitivity and/or selectivity are discussed. Also, the five main current approaches to fast GC–MS are described, which involve the use of: (1) short, microbore capillary GC columns; (2) fast temperature programming; (3) low-pressure GC–MS; (4) supersonic molecular beam for MS at high GC carrier gas flow; and (5) pressure-tunable GC–GC. Aspects of the different fast GC–MS approaches can be combined in some cases, and different mass analyzers may be used depending on the analytical needs. Thus, the capabilities and costs of quadrupole, ion trap, time-of-flight, and magnetic sector instruments are discussed with emphasis placed on speed. Furthermore, applications of fast GC–MS that appear in the literature are compiled and reviewed. At this time, the future usefulness of fast GC–MS depends to some extent upon improvement of existing approaches and commercialization of interesting new techniques, but moreover, a greater emphasis is needed to streamline overall laboratory operations and sample preparation procedures if fast GC–MS is to become implemented in routine applications.     

Structure and stability of natural organic matter/soil complexes and related synthetic and mixed analogues

This review aimed at the presentation of recent, new approaches which have been developed to improve our knowledge of soil structure and some related characteristics. The investigations reviewed addressed a large number of solid/polymer systems, from strictly synthetic to fully natural systems. Only studies correlating adsorption and solid structuring were considered, so that a great number of adsorption studies were not taken into account.Despite the very complex chemical nature, composition and structure of natural organic matter and soils, some analogues appeared to be useful for determining the role of the natural substances in the stability of soils. Stability means that the soil was able to resist fragmentation and dispersion induced by successive drying and wetting processes. Actually, in the domain of low polymer content, the cohesion of soils was found to be correlated to the concentration of natural organic matter and established by a mechanism which is similar to that inducing the flocculation of suspended colloidal particles. The paper reviews some characteristics of synthetic, natural and mixed systems which display the correlation existing between the structuring of solid agglomerates and the adsorption of polymers.     

Monte Carlo Simulation of Electron Transport and X-Ray Generation. I. Electron Elastic and Inelastic Scattering

We present different theoretical approaches to determine differential cross sections for elastic and inelastic interactions of electrons. These cross sections are the basic ingredients for accurate Monte Carlo simulation of electron transport in matter. The considered models range from simple analytical approximations employed in early calculations to purely numerical differential cross sections described by large databases calculated with state-of-the-art theory.     

Teaching liquid crystals – observation inspired curiosity

Soft matter has become involved in all aspects of everyday life over the past few decades, from diapers and the water-absorbing colloidal crystals hidden in them to the omnipresent liquid crystal displays. This article discusses an introduction to one example of soft matter – liquid crystals – at various educational levels. It stresses the importance of experimental work and presents a few simplified versions of elaborate techniques graduate students later meet in laboratories. A set of simple experiments, which illustrate typical phenomena for liquid crystals, but use different approaches or different materials than liquid crystals, are also presented. Drawing upon analogies is an essential part of an active researcher’s thought processes. By providing analogous experiences and showing clear analogies between various phenomena, a lecturer can train students in the use of analogies as a standard approach when encountering new problems.     

QUANTUM MECHANICAL ANALYSIS OF ELECTRONIC TRANSITIONS IN SOME CYANINE DYE PHOTOSENSITIZERS

Abstract— INDO and CNDO/2 calculations of some cyanine dye photosensitizers are reported. The redistribution of electron charge density following various electronic transitions is analyzed and found to be localized mainly in the conjugated chains. The charge redistribution is shown to be strongly influenced by presence of the counter ion, which also proves to be a main factor in determination of the ionization energy values and symmetry of the molecular orbitals. The results suggest an ionization process different from the one considered in previous approaches, because the electron is shown here to leave the negative ion, with the conjugated cation acting as a "photon trap". This situation is shown to provide a link between different models of optical sensitization. Results and assumptions from other methods, including the 'electron gas' models for the conjugated chain, are discussed in view of the counter-ion effect and the chain–localized transitions found here.     

个旧超大型锡多金属矿稀土元素地球化学特征

对比研究了个旧不同类型岩(矿)石(蚀变花岗岩、钙质泥岩、大理岩、矽卡岩矿石、层状矿石和脉状矿石)的稀土元素、微量元素地球化学特征,借以示踪不同类型矿床的成矿物质来源。研究表明不同类型矿石中的稀土元素配分曲线较为相似,成矿物质具有同源性,并与本区的花岗岩具有一定的成因联系。由于其成矿方式的不同,不同类型矿石中的稀土元素特征和矿物组合特征略有差异,脉状矿石和层状矿石中稀土含量相对较少且富集轻稀土,而矽卡岩矿石中稀土含量相对较多且轻、重稀土的含量变化较大。     

Post-photosynthetic fractionation of stable carbon isotopes between plant organs--a widespread phenomenon

Discrimination against 13C during photosynthesis is a well-characterised phenomenon. It leaves behind distinct signatures in organic matter of plants and in the atmosphere. The former is depleted in 13C, the latter is enriched during periods of preponderant photosynthetic activity of terrestrial ecosystems. The intra-annual cycle and latitudinal gradient in atmospheric 13C resulting from photosynthetic and respiratory activities of terrestrial plants have been exploited for the reconstruction of sources and sinks through deconvolution by inverse modelling. Here, we compile evidence for widespread post-photosynthetic fractionation that further modifies the isotopic signatures of individual plant organs and consequently leads to consistent differences in delta13C between plant organs. Leaves were on average 0.96 per thousand and 1.91 per thousand more depleted than roots and woody stems, respectively. This phenomenon is relevant if the isotopic signature of CO2-exchange fluxes at the ecosystem level is used for the reconstruction of individual sources and sinks. It may also modify the parameterization of inverse modelling approaches if it leads to different isotopic signatures of organic matter with different residence times within the ecosystems and to a respiratory contribution to the average difference between the isotopic composition of plant organic matter and the atmosphere. We discuss the main hypotheses that can explain the observed inter-organ differences in delta13C.     

Radionuclide fractionation in a forest soil profile

Two alternative approaches, a sequential extraction scheme and the calculation of the variation of the distribution coefficient of radiocaesum in different K–Ca–NH₄ scenarios, were used to study the behaviour and fractionation of this radionuclide in a forest soil profile. The first approach was applied to samples originating from an experiment in which the original L (litter) layer was replaced by an L layer contaminated with a radioactive aerosol, allowing a downward migration of radiocaesium. The samples belonged to different stages after the contamination. The second approach was applied to samples contaminated with soluble radiocaseium. The results indicate that radiocaesium behaviour is quite similar in the Hand A layers, and that the mineral matter seems to govern the behaviour of radiocaesium in case of direct condensed deposition or when radiocaesium is released from structural components of the organic matter phase.     

Effect of Liquid Animal Manure Application on the Solubilization of Heavy Metals from Soil

Abstract

The effect of liquid animal manure on heavy metal solubilization in soil has been studied in the laboratory; three different types of experiments were carried out:

1) aerobic and anaerobic incubation of soil/manure mixtures

2) desorption of heavy metals from soil, as affected by manure liquid fraction

3) gel permeation chromatography of soil/manure aqueous extracts to identify components responsible for heavy metal solubilization.

Alf three different approaches showed that complexation involving high molecular weight dissolved organic matter from the soil/manure matrix is (together with pH) the most important driving force for heavy metal solubilization. As a consequence, chemical and microbial processes (e.g. nitrification) that influence dissolved organic matter concentrations in the soil solution, determine the degree of heavy metal solubilization in manured soil.     

Soft matter lithium salt electrolytes: ion conduction and application to rechargeable batteries

Abstract  Soft matter provides diverse opportunities for the development of electrolytes for all solid state lithium batteries. Here we review soft matter solid electrolytes for lithium batteriesthat are primarily obtained starting from liquid electrolytic systems. This concept of solid electrolyte synthesis from liquid is significantly different from prevalent approaches. The novelty of our approach is discussed in the light of various fundamental issues and in relation to its application to rechargeable lithium batteries. Graphical abstract   M. Patel and S. K. Das have contributed equally to the work.     

大气颗粒物中砷及其形态的研究进展

大气颗粒物中毒性准金属元素砷及其形态含量变化引起的环境健康问题受到了广泛关注。由于工业生产和煤燃烧等人类活动,砷普遍存在于多种环境介质中。排放到大气中的砷能够随气流进行长距离迁移,致使一些偏远区域大气中的砷含量明显超出欧盟的限制标准(6 ng/m3)。砷的毒性表达很大程度依赖其存在种态,无机砷毒性大于有机砷,且砷(Ⅲ)的毒性明显强于砷(Ⅴ)。本文概述了大气中砷的来源,并选取自2000年来的代表性成果比较了不同国家及不同功能区大气砷的含量变化,同时对1975年来多数关于大气颗粒物中砷形态变化特征的研究进行了评述。     

Some Applications of Computerized GC-MS to the Determination of Biogenic and Anthropogenic Organic Matter in the Environmentt

Abstract

This is an overview of the application of organic mass spectrometry and ancillary techniques to the analysis of organic matter in environmental research. Such organic matter is usually analyzed in terms of gas, bitumen (lipids), and “kerogen”, with asphaltenes and humic substances for some samples. This approach is illustrated with some examples and the origin, the environmental history and the nature of secondary products of this organic matter can be evaluated by using the data derived from both specific molecular and bulk chemical (also physical) analyses. Evaluations of production and fluxes and cross-correlations can thus be made by the application of the same separation and analytical procedures to samples from different environmental compartments (eg., biota, atmosphere, hydrosphere, lithosphere, etc.).     

Metaheuristics for multiple sequence alignment: A systematic review

The Multiple Sequence Alignment (MSA) is a key task in bioinformatics, because it is used in different important biological analysis, such as function and structure prediction of unknown proteins. There are several approaches to perform MSA and the use of metaheuristics stands out because of the search ability of these methods, which generally leads to good results in a reasonable amount of time. This paper presents a Systematic Literature Review (SLR) on metaheuristics for MSA, compiling relevant works published between 2014 and 2019. The results of our SLR show the constant interest in this subject, due to the several recent publications that use different metaheuristics to obtain more accurate alignments. Moreover, the final results of our SLR show a multi-objective and hybrid approaches trends, which generally leads these methods to achieve even better results. Thus, we show in this work how the use of metaheuristics to perform MSA still remains an important and promising open research field.